Wall clock time and date at job start Tue Mar 31 2020 16:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47042 * 2 1 4 4 C 1.38237 * 119.99699 * 90.00003 * 3 2 1 5 5 C 1.38236 * 119.99382 * 180.02562 * 4 3 2 6 6 C 1.38231 * 120.00422 * 359.97438 * 5 4 3 7 7 C 1.50707 * 119.99945 * 179.97438 * 6 5 4 8 8 C 1.52991 * 109.47401 * 305.93930 * 7 6 5 9 9 C 1.53005 * 109.46994 * 185.93655 * 7 6 5 10 10 C 1.50704 * 109.46683 * 65.94082 * 7 6 5 11 11 O 1.21280 * 120.00092 * 355.56496 * 10 7 6 12 12 N 1.34774 * 119.99942 * 175.55725 * 10 7 6 13 13 C 1.46499 * 120.00313 * 179.97438 * 12 10 7 14 14 H 1.09003 * 112.90409 * 336.25740 * 13 12 10 15 15 C 1.53786 * 113.61395 * 107.50408 * 13 12 10 16 16 C 1.53773 * 87.07938 * 139.98420 * 15 13 12 17 17 H 1.09003 * 113.61338 * 220.01861 * 16 15 13 18 18 N 1.46501 * 113.69446 * 89.12617 * 16 15 13 19 19 C 1.36938 * 120.00175 * 107.45890 * 18 16 15 20 20 H 1.08002 * 119.99857 * 0.02562 * 19 18 16 21 21 C 1.38812 * 120.00104 * 180.02562 * 19 18 16 22 22 N 1.31624 * 119.99625 * 180.02562 * 21 19 18 23 23 Si 1.86793 * 119.99981 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47307 * 89.99997 * 23 21 19 25 25 H 1.48501 * 109.46842 * 209.99480 * 23 21 19 26 26 H 1.48497 * 109.47017 * 329.99493 * 23 21 19 27 27 C 1.53774 * 113.61670 * 204.99994 * 13 12 10 28 28 C 1.38230 * 119.99980 * 0.25708 * 6 5 4 29 29 C 1.38235 * 120.00070 * 359.47013 * 28 6 5 30 30 H 1.09000 * 109.47293 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47413 * 300.00146 * 1 2 3 32 32 H 1.09000 * 109.46813 * 59.99997 * 1 2 3 33 33 H 1.09000 * 109.47413 * 239.99854 * 2 1 3 34 34 H 1.09000 * 109.46813 * 120.00003 * 2 1 3 35 35 H 1.07992 * 120.00229 * 359.97438 * 4 3 2 36 36 H 1.08011 * 119.99744 * 179.97438 * 5 4 3 37 37 H 1.08999 * 109.46888 * 179.97438 * 8 7 6 38 38 H 1.08994 * 109.47345 * 300.00235 * 8 7 6 39 39 H 1.09001 * 109.47111 * 60.00099 * 8 7 6 40 40 H 1.08996 * 109.46998 * 300.00696 * 9 7 6 41 41 H 1.08994 * 109.46658 * 60.00435 * 9 7 6 42 42 H 1.08998 * 109.46766 * 180.02562 * 9 7 6 43 43 H 0.97006 * 119.99671 * 0.02562 * 12 10 7 44 44 H 1.08996 * 113.61227 * 25.43071 * 15 13 12 45 45 H 1.09004 * 113.61290 * 254.53249 * 15 13 12 46 46 H 0.96996 * 119.99927 * 287.46632 * 18 16 15 47 47 H 0.97003 * 119.99122 * 180.02562 * 22 21 19 48 48 H 1.09003 * 113.61254 * 105.46933 * 27 13 12 49 49 H 1.09001 * 113.61960 * 334.57015 * 27 13 12 50 50 H 1.08004 * 119.99995 * 179.72442 * 28 6 5 51 51 H 1.07997 * 120.00393 * 180.27621 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7229 3.3759 1.1971 6 6 2.9533 4.0275 0.0000 7 6 3.4546 5.4488 0.0001 8 6 2.5225 6.3183 0.8461 9 6 3.4841 5.9792 -1.4348 10 6 4.8449 5.4910 0.5799 11 8 5.3453 4.4820 1.0298 12 7 5.5324 6.6501 0.5984 13 6 6.8838 6.6913 1.1626 14 1 7.0689 5.8912 1.8794 15 6 7.9893 6.8374 0.1036 16 6 8.6871 7.8002 1.0786 17 1 9.1375 8.6649 0.5911 18 7 9.5991 7.1343 2.0120 19 6 10.9533 7.2678 1.8587 20 1 11.3491 7.8643 1.0501 21 6 11.8174 6.6364 2.7428 22 7 13.1191 6.7651 2.5957 23 14 11.1330 5.6040 4.1409 24 1 10.9702 4.1999 3.6859 25 1 12.0705 5.6457 5.2919 26 1 9.8144 6.1457 4.5567 27 6 7.2967 8.0823 1.6717 28 6 2.7184 3.3776 -1.1971 29 6 2.2635 2.0722 -1.1972 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0823 1.5635 2.1324 36 1 2.9026 3.8852 2.1325 37 1 2.8853 7.3462 0.8465 38 1 1.5169 6.2877 0.4268 39 1 2.5015 5.9405 1.8683 40 1 4.1481 5.3597 -2.0375 41 1 2.4785 5.9486 -1.8541 42 1 3.8470 7.0070 -1.4348 43 1 5.1321 7.4572 0.2388 44 1 7.6524 7.3156 -0.8161 45 1 8.5464 5.9179 -0.0758 46 1 9.2437 6.5987 2.7384 47 1 13.7229 6.3236 3.2133 48 1 7.2946 8.1679 2.7584 49 1 6.7704 8.9010 1.1808 50 1 2.8942 3.8882 -2.1324 51 1 2.0842 1.5628 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020899562.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:31 Heat of formation + Delta-G solvation = -13.181209 kcal Electronic energy + Delta-G solvation = -28169.024062 eV Core-core repulsion = 24453.713804 eV Total energy + Delta-G solvation = -3715.310257 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.76392 -40.43492 -39.34585 -36.74781 -35.83815 -34.56128 -33.65572 -32.21056 -31.97862 -29.54081 -28.33195 -26.55122 -26.47550 -25.32406 -24.63352 -23.48776 -23.16407 -21.87005 -20.76371 -20.30746 -19.53996 -18.10569 -17.64865 -17.10353 -16.56867 -16.48629 -16.16546 -15.89777 -15.80951 -15.29492 -15.03453 -14.76756 -14.70433 -14.58938 -14.30727 -14.20277 -13.84844 -13.79522 -13.46824 -13.34601 -13.25901 -13.22668 -12.95041 -12.93370 -12.68304 -12.50167 -12.48672 -12.26064 -12.18956 -11.92832 -11.87088 -11.79588 -11.61565 -11.52853 -11.33329 -10.97432 -10.64076 -9.97640 -9.77778 -9.41740 -9.33701 -8.06771 -5.39680 0.40335 0.53497 1.32709 1.36649 1.41768 1.64520 2.21482 2.43192 2.89485 3.23695 3.46529 3.48045 3.66375 3.74588 3.81929 3.90086 3.93770 4.05482 4.06979 4.14880 4.22644 4.24975 4.36297 4.49872 4.54815 4.65693 4.70758 4.74695 4.76433 4.82074 4.83607 4.85333 4.89301 4.98271 5.03763 5.07753 5.10135 5.15325 5.19002 5.20900 5.23557 5.27730 5.28687 5.37119 5.54692 5.62859 5.70730 5.73603 5.76883 6.13401 6.19082 6.62392 7.03389 7.31690 7.80803 7.96690 9.14420 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015592 B = 0.002558 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.328119 B =10944.970923 C =12014.114963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 C -0.091 4.091 4 C -0.135 4.135 5 C -0.104 4.104 6 C -0.080 4.080 7 C -0.035 4.035 8 C -0.135 4.135 9 C -0.142 4.142 10 C 0.515 3.485 11 O -0.584 6.584 12 N -0.698 5.698 13 C 0.128 3.872 14 H 0.073 0.927 15 C -0.171 4.171 16 C 0.152 3.848 17 H 0.078 0.922 18 N -0.738 5.738 19 C -0.229 4.229 20 H 0.065 0.935 21 C -0.061 4.061 22 N -0.980 5.980 23 Si 0.946 3.054 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.254 1.254 27 C -0.136 4.136 28 C -0.120 4.120 29 C -0.129 4.129 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.125 0.875 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.049 0.951 40 H 0.055 0.945 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.417 0.583 44 H 0.107 0.893 45 H 0.035 0.965 46 H 0.363 0.637 47 H 0.258 0.742 48 H 0.068 0.932 49 H 0.129 0.871 50 H 0.144 0.856 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.434 -3.607 -9.146 34.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.153 4.153 5 C -0.122 4.122 6 C -0.080 4.080 7 C -0.038 4.038 8 C -0.192 4.192 9 C -0.200 4.200 10 C 0.302 3.698 11 O -0.463 6.463 12 N -0.350 5.350 13 C 0.023 3.977 14 H 0.091 0.909 15 C -0.213 4.213 16 C 0.042 3.958 17 H 0.096 0.904 18 N -0.379 5.379 19 C -0.360 4.360 20 H 0.083 0.917 21 C -0.253 4.253 22 N -0.630 5.630 23 Si 0.774 3.226 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.179 1.179 27 C -0.175 4.175 28 C -0.138 4.138 29 C -0.147 4.147 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.143 0.857 36 H 0.125 0.875 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.110 0.890 42 H 0.104 0.896 43 H 0.255 0.745 44 H 0.125 0.875 45 H 0.054 0.946 46 H 0.196 0.804 47 H 0.067 0.933 48 H 0.087 0.913 49 H 0.147 0.853 50 H 0.162 0.838 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -32.868 -4.222 -8.894 34.311 hybrid contribution 0.574 -0.711 1.084 1.418 sum -32.293 -4.933 -7.810 33.589 Atomic orbital electron populations 1.21708 0.93731 1.02403 1.02002 1.20586 0.96941 0.91472 1.03251 1.20177 0.98743 0.97141 0.93045 1.21164 1.00919 0.94819 0.98410 1.20978 0.98203 0.95317 0.97700 1.19516 0.99814 0.95052 0.93663 1.19741 0.90717 0.94095 0.99262 1.21898 0.99471 0.99214 0.98609 1.22009 1.04271 1.01981 0.91695 1.21120 0.88006 0.82921 0.77731 1.90721 1.71467 1.35670 1.48427 1.45840 1.15786 1.11586 1.61750 1.22243 0.80983 0.98421 0.96077 0.90896 1.24167 0.97393 1.00615 0.99150 1.21213 0.89219 0.94459 0.90944 0.90429 1.42560 1.02245 1.59821 1.33247 1.19096 0.82242 1.24582 1.10094 0.91672 1.25418 0.95394 1.02394 1.02051 1.69861 1.02398 1.49865 1.40890 0.85539 0.78315 0.78970 0.79760 1.21431 1.21713 1.17858 1.23748 0.95871 0.96287 1.01638 1.21391 0.99194 0.95135 0.98033 1.21267 1.00319 0.94885 0.98193 0.91176 0.93048 0.92437 0.90280 0.91110 0.85669 0.87489 0.89564 0.89567 0.93222 0.92620 0.88959 0.89591 0.74479 0.87468 0.94558 0.80425 0.93302 0.91340 0.85306 0.83802 0.84260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.89 71.98 0.71 -0.93 16 2 C -0.09 -1.24 6.06 29.85 0.18 -1.06 16 3 C -0.09 -1.79 5.13 -19.87 -0.10 -1.89 16 4 C -0.14 -3.03 9.70 22.27 0.22 -2.81 16 5 C -0.10 -2.55 8.15 22.27 0.18 -2.37 16 6 C -0.08 -1.77 4.33 -19.87 -0.09 -1.86 16 7 C -0.03 -0.63 0.72 -53.67 -0.04 -0.67 16 8 C -0.13 -1.75 8.17 71.98 0.59 -1.16 16 9 C -0.14 -1.68 7.01 71.98 0.50 -1.18 16 10 C 0.52 13.56 6.40 87.66 0.56 14.12 16 11 O -0.58 -22.03 14.93 -3.03 -0.05 -22.08 16 12 N -0.70 -15.24 5.17 -440.04 -2.28 -17.51 16 13 C 0.13 3.76 4.12 45.52 0.19 3.94 16 14 H 0.07 2.73 7.47 -2.39 -0.02 2.72 16 15 C -0.17 -5.51 7.68 31.12 0.24 -5.27 16 16 C 0.15 5.43 4.56 45.51 0.21 5.64 16 17 H 0.08 2.76 8.10 -2.39 -0.02 2.74 16 18 N -0.74 -34.82 5.12 -320.46 -1.64 -36.46 16 19 C -0.23 -13.18 10.45 84.03 0.88 -12.30 16 20 H 0.07 4.03 8.06 -2.91 -0.02 4.01 16 21 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 22 N -0.98 -63.67 13.97 21.65 0.30 -63.37 16 23 Si 0.95 47.50 27.74 68.60 1.90 49.40 16 24 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 25 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 26 H -0.25 -11.62 6.52 99.48 0.65 -10.97 16 27 C -0.14 -3.53 7.58 31.12 0.24 -3.29 16 28 C -0.12 -2.33 8.99 22.27 0.20 -2.13 16 29 C -0.13 -2.41 9.70 22.27 0.22 -2.19 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.08 1.01 8.09 -2.39 -0.02 0.99 16 34 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 35 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.11 2.72 7.23 -2.90 -0.02 2.70 16 37 H 0.09 0.74 7.88 -2.39 -0.02 0.72 16 38 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.05 0.79 7.08 -2.39 -0.02 0.78 16 40 H 0.05 0.80 7.25 -2.39 -0.02 0.78 16 41 H 0.09 0.74 7.78 -2.39 -0.02 0.72 16 42 H 0.09 0.65 7.33 -2.39 -0.02 0.64 16 43 H 0.42 5.55 7.62 -92.70 -0.71 4.85 16 44 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 45 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 46 H 0.36 17.00 5.76 -92.71 -0.53 16.47 16 47 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 48 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.13 2.21 8.12 -2.39 -0.02 2.19 16 50 H 0.14 2.12 5.91 -2.91 -0.02 2.10 16 51 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -78.86 404.96 3.21 -75.65 By element: Atomic # 1 Polarization: 33.35 SS G_CDS: -0.38 Total: 32.98 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: 5.35 Total: -18.61 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -3.61 Total: -117.35 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.05 Total: -22.08 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 1.90 Total: 49.40 kcal Total: -78.86 3.21 -75.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020899562.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.467 kcal (2) G-P(sol) polarization free energy of solvation -78.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds