Wall clock time and date at job start Tue Mar 31 2020 16:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47482 * 2 1 4 4 C 1.52997 * 109.46870 * 239.99755 * 2 1 3 5 5 C 1.50702 * 109.47271 * 120.00470 * 2 1 3 6 6 C 1.38235 * 120.00245 * 59.99427 * 5 2 1 7 7 C 1.38232 * 119.99912 * 180.02562 * 6 5 2 8 8 C 1.38232 * 120.00221 * 359.94705 * 7 6 5 9 9 C 1.50702 * 120.00258 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.46686 * 90.00587 * 9 8 7 11 11 O 1.21280 * 120.00269 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99932 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99985 * 179.97438 * 12 10 9 14 14 H 1.09002 * 112.85221 * 334.67013 * 13 12 10 15 15 C 1.53785 * 113.68813 * 105.94035 * 13 12 10 16 16 C 1.53777 * 87.08241 * 89.12417 * 15 13 12 17 17 H 1.08998 * 113.68990 * 139.98657 * 16 15 13 18 18 N 1.46497 * 113.61724 * 270.88663 * 16 15 13 19 19 C 1.36936 * 119.99610 * 252.49615 * 18 16 15 20 20 H 1.08005 * 120.00159 * 0.02562 * 19 18 16 21 21 C 1.38816 * 119.99973 * 179.97438 * 19 18 16 22 22 N 1.31612 * 119.99796 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99917 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46719 * 90.00698 * 23 21 19 25 25 H 1.48501 * 109.46900 * 210.00207 * 23 21 19 26 26 H 1.48496 * 109.47206 * 330.00427 * 23 21 19 27 27 C 1.53781 * 113.61339 * 203.47543 * 13 12 10 28 28 C 1.38239 * 119.99971 * 0.28475 * 8 7 6 29 29 C 1.38234 * 119.99670 * 239.98022 * 5 2 1 30 30 H 1.08998 * 109.46854 * 300.00078 * 1 2 3 31 31 H 1.08999 * 109.46993 * 59.99835 * 1 2 3 32 32 H 1.08997 * 109.47227 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47196 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46766 * 300.00447 * 3 2 1 35 35 H 1.09000 * 109.46780 * 59.99697 * 3 2 1 36 36 H 1.08998 * 109.47548 * 300.00125 * 4 2 1 37 37 H 1.09006 * 109.47370 * 60.00388 * 4 2 1 38 38 H 1.09002 * 109.47352 * 179.97438 * 4 2 1 39 39 H 1.08000 * 119.99693 * 359.97438 * 6 5 2 40 40 H 1.08004 * 119.99948 * 179.97438 * 7 6 5 41 41 H 1.08997 * 109.47263 * 330.01247 * 9 8 7 42 42 H 1.08994 * 109.47457 * 210.00092 * 9 8 7 43 43 H 0.96998 * 119.99866 * 0.02562 * 12 10 9 44 44 H 1.08999 * 113.61060 * 203.67840 * 15 13 12 45 45 H 1.08997 * 113.61198 * 334.57634 * 15 13 12 46 46 H 0.96998 * 120.00595 * 72.49863 * 18 16 15 47 47 H 0.97009 * 120.00044 * 179.97438 * 22 21 19 48 48 H 1.09000 * 113.61578 * 25.34726 * 27 13 12 49 49 H 1.08997 * 113.61673 * 156.25695 * 27 13 12 50 50 H 1.07996 * 119.99831 * 179.72046 * 28 8 7 51 51 H 1.08000 * 120.00511 * 359.97438 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0324 -0.7105 1.2304 6 6 1.6984 -2.0339 1.4492 7 6 2.1588 -2.6854 2.5781 8 6 2.9541 -2.0139 3.4876 9 6 3.4565 -2.7243 4.7181 10 6 4.7837 -3.3717 4.4174 11 8 5.2736 -3.2662 3.3130 12 7 5.4269 -4.0672 5.3763 13 6 6.7168 -4.6970 5.0839 14 1 6.8480 -4.9215 4.0253 15 6 7.9166 -3.9687 5.7125 16 6 7.7048 -4.8545 6.9515 17 1 8.6328 -5.2069 7.4018 18 7 6.7787 -4.2815 7.9313 19 6 7.2556 -3.7839 9.1146 20 1 8.3145 -3.8135 9.3253 21 6 6.3781 -3.2403 10.0429 22 7 5.0879 -3.2038 9.7859 23 14 7.0286 -2.5622 11.6573 24 1 7.3554 -1.1228 11.4937 25 1 5.9949 -2.7183 12.7120 26 1 8.2524 -3.3062 12.0496 27 6 7.0493 -5.8788 6.0100 28 6 3.2841 -0.6890 3.2713 29 6 2.8274 -0.0388 2.1401 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2492 37 1 1.6766 -0.2075 -2.1393 38 1 3.1299 -0.7209 -1.2495 39 1 1.0770 -2.5586 0.7385 40 1 1.8975 -3.7193 2.7492 41 1 2.7384 -3.4887 5.0150 42 1 3.5782 -2.0056 5.5284 43 1 5.0352 -4.1513 6.2597 44 1 8.8592 -4.1556 5.1980 45 1 7.7366 -2.9097 5.8970 46 1 5.8278 -4.2545 7.7420 47 1 4.4746 -2.8243 10.4347 48 1 6.1693 -6.3617 6.4348 49 1 7.7549 -6.5878 5.5770 50 1 3.9017 -0.1631 3.9843 51 1 3.0890 0.9950 1.9689 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022775171.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:35 Heat of formation + Delta-G solvation = 5.810294 kcal Electronic energy + Delta-G solvation = -27987.832213 eV Core-core repulsion = 24273.345489 eV Total energy + Delta-G solvation = -3714.486724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.20462 -39.56296 -37.96968 -36.44912 -33.63524 -32.68673 -31.75480 -31.05719 -29.92363 -27.56848 -27.45174 -27.27615 -25.11768 -24.46920 -23.01586 -22.31129 -21.84973 -20.07558 -19.25118 -18.87217 -17.44714 -16.66916 -16.54455 -15.63241 -15.52300 -14.95073 -14.70263 -14.64045 -14.45657 -14.20862 -14.05907 -13.74838 -13.67162 -13.39069 -13.16278 -13.00428 -12.74410 -12.34646 -12.16793 -12.06838 -12.01129 -11.88528 -11.74767 -11.68045 -11.46772 -11.32587 -11.12192 -10.92696 -10.83591 -10.67575 -10.54973 -10.24649 -10.16385 -9.89390 -9.59730 -9.50111 -8.96492 -8.79455 -8.50511 -8.42108 -7.09923 -5.90323 -3.18707 1.40534 1.52819 3.00009 3.37478 3.43180 3.44239 3.50002 3.93954 4.43487 4.49900 4.57125 4.80415 4.84990 4.98015 5.06494 5.07797 5.12215 5.24140 5.26382 5.33192 5.39750 5.41019 5.45939 5.50373 5.53196 5.54654 5.64607 5.65702 5.71100 5.74207 5.81356 5.85029 5.86191 5.94451 6.05135 6.10120 6.12195 6.14161 6.16509 6.28404 6.32164 6.52361 6.58217 6.67306 6.71120 6.72832 6.84459 7.09744 7.15251 7.62743 7.95637 8.29587 8.63124 9.40011 9.94617 10.28099 11.32605 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016469 B = 0.002427 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.802150 B =11532.575194 C =12490.028640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.029 4.029 3 C -0.144 4.144 4 C -0.138 4.138 5 C -0.077 4.077 6 C -0.116 4.116 7 C -0.104 4.104 8 C -0.059 4.059 9 C -0.107 4.107 10 C 0.519 3.481 11 O -0.546 6.546 12 N -0.702 5.702 13 C 0.125 3.875 14 H 0.089 0.911 15 C -0.187 4.187 16 C 0.164 3.836 17 H 0.066 0.934 18 N -0.704 5.704 19 C -0.242 4.242 20 H 0.074 0.926 21 C -0.012 4.012 22 N -0.934 5.934 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C -0.168 4.168 28 C -0.102 4.102 29 C -0.120 4.120 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.408 0.592 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.379 0.621 47 H 0.257 0.743 48 H 0.070 0.930 49 H 0.089 0.911 50 H 0.120 0.880 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.206 3.206 -18.408 20.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.029 4.029 3 C -0.201 4.201 4 C -0.195 4.195 5 C -0.077 4.077 6 C -0.134 4.134 7 C -0.122 4.122 8 C -0.059 4.059 9 C -0.147 4.147 10 C 0.305 3.695 11 O -0.423 6.423 12 N -0.355 5.355 13 C 0.019 3.981 14 H 0.107 0.893 15 C -0.229 4.229 16 C 0.052 3.948 17 H 0.084 0.916 18 N -0.344 5.344 19 C -0.373 4.373 20 H 0.092 0.908 21 C -0.208 4.208 22 N -0.583 5.583 23 Si 0.741 3.259 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.208 4.208 28 C -0.120 4.120 29 C -0.138 4.138 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.120 0.880 42 H 0.126 0.874 43 H 0.246 0.754 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.214 0.786 47 H 0.067 0.933 48 H 0.089 0.911 49 H 0.108 0.892 50 H 0.138 0.862 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.783 3.328 -18.991 20.792 hybrid contribution -0.107 0.369 1.369 1.422 sum -7.890 3.697 -17.622 19.658 Atomic orbital electron populations 1.21881 0.93857 1.01993 1.01712 1.19479 0.95538 0.94999 0.92887 1.21960 1.01334 0.95036 1.01774 1.21886 1.01431 1.00148 0.96056 1.19720 0.98103 0.94128 0.95708 1.20832 1.00798 0.94304 0.97465 1.20928 0.97814 0.99309 0.94163 1.19297 0.97160 0.93917 0.95565 1.20709 0.95294 1.01171 0.97527 1.20430 0.86245 0.78310 0.84527 1.90671 1.68314 1.60416 1.22923 1.45886 1.21326 1.53180 1.15131 1.21730 0.83431 0.94188 0.98735 0.89338 1.24275 0.96775 1.01525 1.00305 1.21205 0.93814 0.91428 0.88344 0.91620 1.42209 1.05140 1.70777 1.16318 1.19293 0.92888 1.31871 0.93236 0.90845 1.24740 0.95407 1.01676 0.98937 1.69613 1.01205 1.51104 1.36338 0.86147 0.77633 0.78872 0.83269 1.21673 1.21722 1.20697 1.23863 1.01603 0.96892 0.98404 1.21021 0.99031 0.94312 0.97642 1.21081 0.98435 1.00048 0.94264 0.92497 0.92544 0.92468 0.92199 0.92553 0.92249 0.92462 0.92564 0.92404 0.86512 0.86405 0.88023 0.87446 0.75418 0.90567 0.91161 0.78595 0.93338 0.91108 0.89240 0.86200 0.85887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.29 37.16 0.31 -0.77 16 2 C -0.03 -0.26 0.85 -155.66 -0.13 -0.39 16 3 C -0.14 -1.16 7.13 37.16 0.27 -0.90 16 4 C -0.14 -1.17 8.29 37.16 0.31 -0.86 16 5 C -0.08 -0.88 4.76 -104.62 -0.50 -1.38 16 6 C -0.12 -1.37 8.71 -39.58 -0.34 -1.71 16 7 C -0.10 -1.36 9.70 -39.59 -0.38 -1.74 16 8 C -0.06 -0.83 4.37 -104.62 -0.46 -1.29 16 9 C -0.11 -1.52 5.83 -29.03 -0.17 -1.68 16 10 C 0.52 8.89 7.82 -10.98 -0.09 8.81 16 11 O -0.55 -10.92 15.65 5.56 0.09 -10.83 16 12 N -0.70 -12.04 5.12 -53.01 -0.27 -12.32 16 13 C 0.12 2.10 4.30 -67.12 -0.29 1.82 16 14 H 0.09 1.50 7.50 -51.93 -0.39 1.11 16 15 C -0.19 -3.33 7.68 -25.92 -0.20 -3.53 16 16 C 0.16 3.15 4.56 -67.12 -0.31 2.84 16 17 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 18 N -0.70 -16.52 5.18 -52.63 -0.27 -16.79 16 19 C -0.24 -6.41 9.97 -15.06 -0.15 -6.56 16 20 H 0.07 1.91 7.83 -52.48 -0.41 1.49 16 21 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 22 N -0.93 -26.38 13.06 55.49 0.72 -25.65 16 23 Si 0.91 21.65 29.55 -169.99 -5.02 16.62 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 27 C -0.17 -2.67 7.58 -25.91 -0.20 -2.87 16 28 C -0.10 -1.41 9.70 -39.58 -0.38 -1.80 16 29 C -0.12 -1.48 8.98 -39.58 -0.36 -1.84 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.44 7.39 -51.93 -0.38 0.05 16 33 H 0.06 0.50 7.51 -51.93 -0.39 0.11 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.47 7.51 -51.93 -0.39 0.08 16 36 H 0.06 0.48 7.39 -51.93 -0.38 0.09 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.12 1.15 7.10 -52.49 -0.37 0.77 16 40 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 41 H 0.10 1.22 8.09 -51.93 -0.42 0.80 16 42 H 0.11 1.49 8.08 -51.93 -0.42 1.07 16 43 H 0.41 7.23 6.17 -40.82 -0.25 6.98 16 44 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 45 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 46 H 0.38 9.02 5.35 -40.82 -0.22 8.81 16 47 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 50 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 51 H 0.12 1.29 5.90 -52.49 -0.31 0.98 16 LS Contribution 405.54 15.07 6.11 6.11 Total: -1.00 -30.66 405.54 -10.36 -41.02 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: -8.55 Total: 16.12 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -3.17 Total: -14.28 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.18 Total: -54.76 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.66 -10.36 -41.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022775171.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.827 kcal (2) G-P(sol) polarization free energy of solvation -30.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds