Wall clock time and date at job start Tue Mar 31 2020 16:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47482 * 2 1 4 4 C 1.52997 * 109.46870 * 239.99755 * 2 1 3 5 5 C 1.50702 * 109.47271 * 120.00470 * 2 1 3 6 6 C 1.38235 * 120.00245 * 59.99427 * 5 2 1 7 7 C 1.38232 * 119.99912 * 180.02562 * 6 5 2 8 8 C 1.38232 * 120.00221 * 359.94705 * 7 6 5 9 9 C 1.50702 * 120.00258 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.46686 * 90.00587 * 9 8 7 11 11 O 1.21280 * 120.00269 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99932 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99985 * 179.97438 * 12 10 9 14 14 H 1.09002 * 112.85221 * 334.67013 * 13 12 10 15 15 C 1.53785 * 113.68813 * 105.94035 * 13 12 10 16 16 C 1.53777 * 87.08241 * 89.12417 * 15 13 12 17 17 H 1.08998 * 113.68990 * 139.98657 * 16 15 13 18 18 N 1.46497 * 113.61724 * 270.88663 * 16 15 13 19 19 C 1.36936 * 119.99610 * 252.49615 * 18 16 15 20 20 H 1.08005 * 120.00159 * 0.02562 * 19 18 16 21 21 C 1.38816 * 119.99973 * 179.97438 * 19 18 16 22 22 N 1.31612 * 119.99796 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99917 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46719 * 90.00698 * 23 21 19 25 25 H 1.48501 * 109.46900 * 210.00207 * 23 21 19 26 26 H 1.48496 * 109.47206 * 330.00427 * 23 21 19 27 27 C 1.53781 * 113.61339 * 203.47543 * 13 12 10 28 28 C 1.38239 * 119.99971 * 0.28475 * 8 7 6 29 29 C 1.38234 * 119.99670 * 239.98022 * 5 2 1 30 30 H 1.08998 * 109.46854 * 300.00078 * 1 2 3 31 31 H 1.08999 * 109.46993 * 59.99835 * 1 2 3 32 32 H 1.08997 * 109.47227 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47196 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46766 * 300.00447 * 3 2 1 35 35 H 1.09000 * 109.46780 * 59.99697 * 3 2 1 36 36 H 1.08998 * 109.47548 * 300.00125 * 4 2 1 37 37 H 1.09006 * 109.47370 * 60.00388 * 4 2 1 38 38 H 1.09002 * 109.47352 * 179.97438 * 4 2 1 39 39 H 1.08000 * 119.99693 * 359.97438 * 6 5 2 40 40 H 1.08004 * 119.99948 * 179.97438 * 7 6 5 41 41 H 1.08997 * 109.47263 * 330.01247 * 9 8 7 42 42 H 1.08994 * 109.47457 * 210.00092 * 9 8 7 43 43 H 0.96998 * 119.99866 * 0.02562 * 12 10 9 44 44 H 1.08999 * 113.61060 * 203.67840 * 15 13 12 45 45 H 1.08997 * 113.61198 * 334.57634 * 15 13 12 46 46 H 0.96998 * 120.00595 * 72.49863 * 18 16 15 47 47 H 0.97009 * 120.00044 * 179.97438 * 22 21 19 48 48 H 1.09000 * 113.61578 * 25.34726 * 27 13 12 49 49 H 1.08997 * 113.61673 * 156.25695 * 27 13 12 50 50 H 1.07996 * 119.99831 * 179.72046 * 28 8 7 51 51 H 1.08000 * 120.00511 * 359.97438 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0324 -0.7105 1.2304 6 6 1.6984 -2.0339 1.4492 7 6 2.1588 -2.6854 2.5781 8 6 2.9541 -2.0139 3.4876 9 6 3.4565 -2.7243 4.7181 10 6 4.7837 -3.3717 4.4174 11 8 5.2736 -3.2662 3.3130 12 7 5.4269 -4.0672 5.3763 13 6 6.7168 -4.6970 5.0839 14 1 6.8480 -4.9215 4.0253 15 6 7.9166 -3.9687 5.7125 16 6 7.7048 -4.8545 6.9515 17 1 8.6328 -5.2069 7.4018 18 7 6.7787 -4.2815 7.9313 19 6 7.2556 -3.7839 9.1146 20 1 8.3145 -3.8135 9.3253 21 6 6.3781 -3.2403 10.0429 22 7 5.0879 -3.2038 9.7859 23 14 7.0286 -2.5622 11.6573 24 1 7.3554 -1.1228 11.4937 25 1 5.9949 -2.7183 12.7120 26 1 8.2524 -3.3062 12.0496 27 6 7.0493 -5.8788 6.0100 28 6 3.2841 -0.6890 3.2713 29 6 2.8274 -0.0388 2.1401 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2492 37 1 1.6766 -0.2075 -2.1393 38 1 3.1299 -0.7209 -1.2495 39 1 1.0770 -2.5586 0.7385 40 1 1.8975 -3.7193 2.7492 41 1 2.7384 -3.4887 5.0150 42 1 3.5782 -2.0056 5.5284 43 1 5.0352 -4.1513 6.2597 44 1 8.8592 -4.1556 5.1980 45 1 7.7366 -2.9097 5.8970 46 1 5.8278 -4.2545 7.7420 47 1 4.4746 -2.8243 10.4347 48 1 6.1693 -6.3617 6.4348 49 1 7.7549 -6.5878 5.5770 50 1 3.9017 -0.1631 3.9843 51 1 3.0890 0.9950 1.9689 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022775171.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:34 Heat of formation + Delta-G solvation = -9.918574 kcal Electronic energy + Delta-G solvation = -27988.514268 eV Core-core repulsion = 24273.345489 eV Total energy + Delta-G solvation = -3715.168779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.40721 -40.68698 -39.33653 -37.34425 -35.47137 -34.16252 -32.86046 -32.00158 -31.77083 -28.39139 -28.20416 -28.07717 -26.55057 -26.25065 -24.46088 -23.26049 -22.99148 -21.42256 -20.40549 -20.03728 -19.26179 -18.06095 -17.55897 -16.87220 -16.68611 -16.56446 -16.02519 -15.84400 -15.56349 -15.45624 -15.12740 -14.87871 -14.77107 -14.57731 -14.51906 -14.29905 -13.60433 -13.51847 -13.44599 -13.22848 -13.03417 -12.87458 -12.82199 -12.78486 -12.61645 -12.53186 -12.49812 -12.19301 -12.16213 -11.81420 -11.77803 -11.70132 -11.49620 -11.34545 -11.14969 -10.91488 -10.81920 -9.92743 -9.77682 -9.40301 -9.01346 -7.96162 -5.23280 0.41818 0.54290 1.48720 1.49447 1.57297 1.63430 2.23157 2.56083 2.90286 3.36894 3.63089 3.64981 3.80110 3.80833 3.87859 3.92892 4.06087 4.09800 4.13740 4.15870 4.32048 4.39974 4.40843 4.42235 4.55404 4.62724 4.69659 4.80414 4.84328 4.85192 4.88020 4.91241 4.96435 5.02181 5.04406 5.06210 5.07229 5.17771 5.19403 5.22954 5.26294 5.38011 5.38189 5.46266 5.52997 5.59228 5.71355 5.74771 5.76194 6.14182 6.28022 6.56790 7.24665 7.34652 8.07601 8.31032 9.26737 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016469 B = 0.002427 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.802150 B =11532.575194 C =12490.028640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.030 4.030 3 C -0.144 4.144 4 C -0.137 4.137 5 C -0.077 4.077 6 C -0.119 4.119 7 C -0.115 4.115 8 C -0.079 4.079 9 C -0.101 4.101 10 C 0.517 3.483 11 O -0.576 6.576 12 N -0.703 5.703 13 C 0.122 3.878 14 H 0.093 0.907 15 C -0.179 4.179 16 C 0.147 3.853 17 H 0.069 0.931 18 N -0.715 5.715 19 C -0.244 4.244 20 H 0.075 0.925 21 C -0.068 4.068 22 N -0.962 5.962 23 Si 0.968 3.032 24 H -0.292 1.292 25 H -0.295 1.295 26 H -0.272 1.272 27 C -0.144 4.144 28 C -0.123 4.123 29 C -0.129 4.129 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.044 0.956 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.122 0.878 42 H 0.105 0.895 43 H 0.405 0.595 44 H 0.103 0.897 45 H 0.037 0.963 46 H 0.374 0.626 47 H 0.252 0.748 48 H 0.067 0.933 49 H 0.125 0.875 50 H 0.114 0.886 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.364 2.765 -19.769 21.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.030 4.030 3 C -0.201 4.201 4 C -0.194 4.194 5 C -0.077 4.077 6 C -0.137 4.137 7 C -0.133 4.133 8 C -0.079 4.079 9 C -0.141 4.141 10 C 0.305 3.695 11 O -0.456 6.456 12 N -0.355 5.355 13 C 0.017 3.983 14 H 0.111 0.889 15 C -0.221 4.221 16 C 0.037 3.963 17 H 0.087 0.913 18 N -0.356 5.356 19 C -0.376 4.376 20 H 0.093 0.907 21 C -0.261 4.261 22 N -0.612 5.612 23 Si 0.798 3.202 24 H -0.219 1.219 25 H -0.222 1.222 26 H -0.196 1.196 27 C -0.183 4.183 28 C -0.141 4.141 29 C -0.147 4.147 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.156 0.844 40 H 0.147 0.853 41 H 0.140 0.860 42 H 0.123 0.877 43 H 0.242 0.758 44 H 0.122 0.878 45 H 0.056 0.944 46 H 0.209 0.791 47 H 0.061 0.939 48 H 0.086 0.914 49 H 0.143 0.857 50 H 0.133 0.867 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.907 2.866 -20.367 22.035 hybrid contribution 0.000 0.506 1.706 1.780 sum -7.907 3.372 -18.661 20.545 Atomic orbital electron populations 1.21864 0.92714 1.02349 1.02263 1.19556 0.96389 0.95206 0.91813 1.21960 1.00931 0.94647 1.02556 1.21881 1.00603 1.00449 0.96463 1.20080 0.97120 0.94215 0.96255 1.21123 1.00642 0.94579 0.97364 1.21161 0.97745 0.99994 0.94409 1.19386 0.98250 0.94221 0.96061 1.20696 0.94162 1.01464 0.97736 1.20906 0.86927 0.77706 0.83930 1.90643 1.69279 1.61563 1.24094 1.45970 1.21495 1.53133 1.14916 1.21803 0.82949 0.94443 0.99111 0.88933 1.24210 0.98657 0.99245 0.99941 1.21472 0.93658 0.92906 0.88290 0.91300 1.42336 1.05615 1.71158 1.16483 1.19622 0.92991 1.30804 0.94156 0.90692 1.25442 0.95796 1.02958 1.01935 1.69736 1.01998 1.52426 1.37051 0.85220 0.77177 0.77968 0.79842 1.21940 1.22190 1.19649 1.23756 1.01780 0.96329 0.96470 1.21163 0.99781 0.94696 0.98472 1.21314 0.98522 1.00832 0.93992 0.93025 0.90933 0.92238 0.92874 0.90964 0.92307 0.92336 0.90790 0.93693 0.84414 0.85263 0.85962 0.87724 0.75772 0.87825 0.94369 0.79131 0.93890 0.91423 0.85689 0.86744 0.84550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 8.29 71.98 0.60 -1.23 16 2 C -0.03 -0.48 0.85 -52.93 -0.05 -0.53 16 3 C -0.14 -2.10 7.13 71.98 0.51 -1.59 16 4 C -0.14 -2.07 8.29 71.98 0.60 -1.47 16 5 C -0.08 -1.69 4.76 -19.87 -0.09 -1.79 16 6 C -0.12 -2.69 8.71 22.27 0.19 -2.50 16 7 C -0.12 -2.95 9.70 22.27 0.22 -2.74 16 8 C -0.08 -2.26 4.37 -19.87 -0.09 -2.35 16 9 C -0.10 -2.91 5.83 29.10 0.17 -2.74 16 10 C 0.52 17.96 7.82 87.66 0.69 18.65 16 11 O -0.58 -23.29 15.65 -3.03 -0.05 -23.34 16 12 N -0.70 -24.19 5.12 -440.02 -2.25 -26.44 16 13 C 0.12 4.00 4.30 45.52 0.20 4.20 16 14 H 0.09 3.00 7.50 -2.39 -0.02 2.98 16 15 C -0.18 -6.22 7.68 31.12 0.24 -5.98 16 16 C 0.15 5.47 4.56 45.52 0.21 5.68 16 17 H 0.07 2.51 8.10 -2.39 -0.02 2.49 16 18 N -0.72 -33.61 5.18 -320.44 -1.66 -35.27 16 19 C -0.24 -12.94 9.97 84.03 0.84 -12.10 16 20 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 21 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 22 N -0.96 -55.07 13.06 21.65 0.28 -54.78 16 23 Si 0.97 44.73 29.55 68.60 2.03 46.76 16 24 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 25 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 27 C -0.14 -4.27 7.58 31.12 0.24 -4.04 16 28 C -0.12 -3.51 9.70 22.27 0.22 -3.30 16 29 C -0.13 -3.18 8.98 22.27 0.20 -2.98 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.78 7.39 -2.39 -0.02 0.76 16 33 H 0.05 0.84 7.51 -2.39 -0.02 0.82 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.06 0.86 7.51 -2.39 -0.02 0.84 16 36 H 0.06 0.86 7.39 -2.39 -0.02 0.84 16 37 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.14 2.44 7.10 -2.91 -0.02 2.42 16 40 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 41 H 0.12 2.93 8.09 -2.39 -0.02 2.91 16 42 H 0.10 3.04 8.08 -2.39 -0.02 3.02 16 43 H 0.40 14.56 6.17 -92.71 -0.57 13.99 16 44 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 45 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.37 18.04 5.35 -92.71 -0.50 17.55 16 47 H 0.25 14.11 8.31 -92.70 -0.77 13.34 16 48 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.12 2.85 8.14 -2.39 -0.02 2.84 16 50 H 0.11 3.24 8.06 -2.91 -0.02 3.21 16 51 H 0.14 2.86 5.90 -2.91 -0.02 2.84 16 Total: -1.00 -65.69 405.54 3.54 -62.15 By element: Atomic # 1 Polarization: 51.16 SS G_CDS: -0.15 Total: 51.01 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: 5.34 Total: -20.09 kcal Atomic # 7 Polarization: -112.87 SS G_CDS: -3.63 Total: -116.50 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.05 Total: -23.34 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -65.69 3.54 -62.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022775171.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.228 kcal (2) G-P(sol) polarization free energy of solvation -65.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds