Wall clock time and date at job start Tue Mar 31 2020 16:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47008 * 2 1 4 4 C 1.38253 * 119.99890 * 270.01705 * 3 2 1 5 5 C 1.38212 * 119.99859 * 179.97438 * 4 3 2 6 6 C 1.38255 * 120.00284 * 0.02562 * 5 4 3 7 7 C 1.38217 * 119.99740 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99801 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.46977 * 269.95092 * 8 7 6 10 10 O 1.21285 * 119.99654 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00030 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00008 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47348 * 275.00035 * 12 11 9 14 14 C 1.53004 * 109.47134 * 300.00244 * 13 12 11 15 15 C 1.52994 * 109.46758 * 299.99981 * 14 13 12 16 16 N 1.46497 * 109.47041 * 180.02562 * 15 14 13 17 17 C 1.36937 * 120.00269 * 84.99519 * 16 15 14 18 18 H 1.08002 * 120.00027 * 0.02562 * 17 16 15 19 19 C 1.38816 * 120.00073 * 180.02562 * 17 16 15 20 20 N 1.31621 * 119.99838 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00155 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47038 * 89.99712 * 21 19 17 23 23 H 1.48499 * 109.47124 * 209.99721 * 21 19 17 24 24 H 1.48500 * 109.46720 * 330.00118 * 21 19 17 25 25 C 1.52998 * 109.47710 * 59.99812 * 15 14 13 26 26 C 1.52999 * 109.46865 * 300.00034 * 25 15 14 27 27 C 1.38215 * 119.99815 * 89.99868 * 3 2 1 28 28 H 1.09005 * 109.47028 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47213 * 299.99878 * 1 2 3 30 30 H 1.09000 * 109.47148 * 60.00017 * 1 2 3 31 31 H 1.08990 * 109.47328 * 239.99584 * 2 1 3 32 32 H 1.09006 * 109.47142 * 119.99509 * 2 1 3 33 33 H 1.08002 * 120.00364 * 0.02562 * 4 3 2 34 34 H 1.08000 * 119.99961 * 180.02562 * 5 4 3 35 35 H 1.07997 * 120.00435 * 180.02562 * 6 5 4 36 36 H 1.08994 * 109.46953 * 29.94909 * 8 7 6 37 37 H 1.08996 * 109.46834 * 149.95334 * 8 7 6 38 38 H 0.96993 * 119.99915 * 359.97438 * 11 9 8 39 39 H 1.09007 * 109.47394 * 34.99513 * 12 11 9 40 40 H 1.09004 * 109.46882 * 59.99996 * 13 12 11 41 41 H 1.08998 * 109.47421 * 179.97438 * 13 12 11 42 42 H 1.08996 * 109.47183 * 179.97438 * 14 13 12 43 43 H 1.09001 * 109.46901 * 59.99823 * 14 13 12 44 44 H 1.09001 * 109.47286 * 299.99607 * 15 14 13 45 45 H 0.97004 * 119.99952 * 264.99562 * 16 15 14 46 46 H 0.96998 * 119.99759 * 180.02562 * 20 19 17 47 47 H 1.08995 * 109.47491 * 180.02562 * 25 15 14 48 48 H 1.09001 * 109.46914 * 59.99567 * 25 15 14 49 49 H 1.08998 * 109.47376 * 299.99805 * 26 25 15 50 50 H 1.09005 * 109.47358 * 179.97438 * 26 25 15 51 51 H 1.07995 * 120.00164 * 359.72517 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0727 -1.1973 5 6 2.7225 3.3759 -1.1973 6 6 2.9533 4.0276 0.0000 7 6 2.7243 3.3756 1.1970 8 6 2.9764 4.0857 2.5021 9 6 4.3998 3.8483 2.9363 10 8 5.1371 3.1697 2.2530 11 7 4.8535 4.3901 4.0840 12 6 6.2371 4.1589 4.5064 13 6 6.3232 2.8352 5.2689 14 6 5.4173 2.8962 6.5004 15 6 5.8705 4.0395 7.4106 16 7 5.0036 4.0976 8.5901 17 6 5.2686 3.3043 9.6743 18 1 6.1169 2.6361 9.6601 19 6 4.4468 3.3590 10.7918 20 7 3.4132 4.1737 10.8093 21 14 4.8086 2.2773 12.2712 22 1 5.7086 3.0008 13.2050 23 1 3.5381 1.9463 12.9649 24 1 5.4670 1.0252 11.8196 25 6 5.7845 5.3632 6.6482 26 6 6.6903 5.3021 5.4166 27 6 2.2626 2.0724 1.1970 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8898 32 1 1.8933 -0.5138 0.8901 33 1 2.0817 1.5638 -2.1327 34 1 2.9019 3.8853 -2.1326 35 1 3.3125 5.0461 0.0000 36 1 2.8097 5.1549 2.3720 37 1 2.2959 3.7017 3.2620 38 1 4.2640 4.9331 4.6302 39 1 6.8824 4.1153 3.6290 40 1 6.0003 2.0208 4.6204 41 1 7.3527 2.6630 5.5827 42 1 5.4783 1.9531 7.0434 43 1 4.3879 3.0683 6.1861 44 1 6.8999 3.8675 7.7249 45 1 4.2418 4.6980 8.6030 46 1 2.8392 4.2122 11.5903 47 1 6.1078 6.1776 7.2964 48 1 4.7551 5.5352 6.3338 49 1 7.7197 5.1301 5.7309 50 1 6.6288 6.2450 4.8731 51 1 2.0784 1.5648 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026517341.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:59 Heat of formation + Delta-G solvation = -31.307931 kcal Electronic energy + Delta-G solvation = -28005.029894 eV Core-core repulsion = 24288.933603 eV Total energy + Delta-G solvation = -3716.096291 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.33315 -39.39354 -37.84863 -34.73262 -34.49646 -32.88458 -32.39586 -30.72689 -30.43731 -29.67154 -28.17808 -27.03854 -24.12404 -23.69682 -22.47806 -22.19479 -21.42274 -20.83227 -20.10567 -18.84392 -17.27981 -17.04918 -16.62543 -15.99158 -15.66847 -15.36944 -15.08375 -14.86089 -14.31370 -14.12327 -13.87021 -13.80305 -13.56535 -13.47990 -13.30715 -13.13504 -13.02463 -12.38198 -12.25801 -12.22938 -12.06801 -11.92052 -11.84736 -11.61335 -11.44348 -11.03441 -10.99751 -10.92460 -10.88046 -10.80624 -10.40047 -10.18277 -10.12946 -9.81489 -9.70495 -9.57601 -8.93111 -8.87795 -8.80018 -8.70792 -6.95913 -5.77909 -3.05999 1.22607 1.30836 2.72350 3.24494 3.42382 3.48026 3.49276 3.73501 4.47818 4.54201 4.57578 4.69781 4.85400 4.93884 4.98292 5.04978 5.07482 5.11719 5.13924 5.14736 5.27729 5.33483 5.41412 5.47690 5.50352 5.57947 5.67027 5.68456 5.69877 5.75630 5.88009 5.89689 5.93486 5.97647 6.01189 6.02466 6.09452 6.26939 6.34401 6.36297 6.45783 6.50906 6.51675 6.53517 6.67176 6.77066 6.90620 6.98131 7.12978 7.61294 7.69770 8.32551 8.41256 9.52274 10.10486 10.44861 11.44896 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014060 B = 0.002445 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.941065 B =11449.916534 C =12671.841040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.081 4.081 4 C -0.121 4.121 5 C -0.118 4.118 6 C -0.111 4.111 7 C -0.058 4.058 8 C -0.107 4.107 9 C 0.515 3.485 10 O -0.537 6.537 11 N -0.719 5.719 12 C 0.149 3.851 13 C -0.128 4.128 14 C -0.131 4.131 15 C 0.177 3.823 16 N -0.725 5.725 17 C -0.236 4.236 18 H 0.069 0.931 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.905 3.095 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.124 4.124 26 C -0.122 4.122 27 C -0.101 4.101 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.401 0.599 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.046 0.954 45 H 0.382 0.618 46 H 0.254 0.746 47 H 0.066 0.934 48 H 0.055 0.945 49 H 0.077 0.923 50 H 0.063 0.937 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.509 0.050 -23.799 23.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.081 4.081 4 C -0.139 4.139 5 C -0.136 4.136 6 C -0.129 4.129 7 C -0.058 4.058 8 C -0.147 4.147 9 C 0.301 3.699 10 O -0.414 6.414 11 N -0.371 5.371 12 C 0.045 3.955 13 C -0.167 4.167 14 C -0.171 4.171 15 C 0.068 3.932 16 N -0.366 5.366 17 C -0.367 4.367 18 H 0.087 0.913 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.736 3.264 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.163 4.163 26 C -0.161 4.161 27 C -0.120 4.120 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.237 0.763 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.216 0.784 46 H 0.064 0.936 47 H 0.085 0.915 48 H 0.074 0.926 49 H 0.095 0.905 50 H 0.081 0.919 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.904 -0.555 -24.129 24.211 hybrid contribution -0.396 -0.146 1.227 1.298 sum -2.300 -0.700 -22.902 23.028 Atomic orbital electron populations 1.21747 0.94730 1.01674 1.02186 1.20546 0.96134 0.92735 1.02911 1.19831 0.99109 0.96130 0.93078 1.20969 1.00588 0.95016 0.97339 1.21040 0.99777 0.94981 0.97771 1.20935 1.00006 0.99942 0.92008 1.19254 0.98619 0.94318 0.93605 1.20716 0.95114 1.02466 0.96365 1.20440 0.89239 0.79486 0.80773 1.90708 1.58126 1.38453 1.54122 1.46155 1.14132 1.53326 1.23526 1.20946 0.82274 0.95406 0.96923 1.21922 1.00785 0.96493 0.97545 1.22199 0.98559 1.01376 0.94987 1.20226 0.94730 0.91205 0.87086 1.42421 1.32153 1.49147 1.12832 1.19241 1.08835 1.15716 0.92897 0.91267 1.24727 0.97862 1.00022 0.98447 1.69654 1.17947 1.40681 1.30013 0.86218 0.76962 0.80067 0.83140 1.21761 1.21816 1.20802 1.21808 0.98818 0.99666 0.95961 1.21796 1.00640 0.97360 0.96263 1.20870 0.99433 0.93958 0.97693 0.92438 0.92457 0.92662 0.91137 0.90942 0.86428 0.86244 0.86405 0.88028 0.87799 0.76321 0.90109 0.92373 0.91540 0.92240 0.92862 0.93600 0.78431 0.93577 0.91510 0.92629 0.90462 0.91862 0.86258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.89 37.16 0.37 -0.71 16 2 C -0.09 -0.73 6.06 -27.88 -0.17 -0.90 16 3 C -0.08 -0.86 5.13 -104.62 -0.54 -1.39 16 4 C -0.12 -1.20 9.70 -39.59 -0.38 -1.58 16 5 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 6 C -0.11 -1.19 9.70 -39.58 -0.38 -1.57 16 7 C -0.06 -0.66 4.37 -104.62 -0.46 -1.11 16 8 C -0.11 -1.07 5.83 -29.03 -0.17 -1.24 16 9 C 0.51 6.72 7.79 -10.99 -0.09 6.64 16 10 O -0.54 -9.05 15.70 5.55 0.09 -8.96 16 11 N -0.72 -8.68 4.23 -53.80 -0.23 -8.91 16 12 C 0.15 1.93 2.78 -67.93 -0.19 1.74 16 13 C -0.13 -1.89 5.60 -26.73 -0.15 -2.04 16 14 C -0.13 -2.29 5.34 -26.73 -0.14 -2.43 16 15 C 0.18 3.33 2.77 -67.94 -0.19 3.14 16 16 N -0.73 -17.53 5.12 -53.43 -0.27 -17.80 16 17 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 20 N -0.93 -27.82 13.06 55.49 0.72 -27.09 16 21 Si 0.90 22.28 29.55 -169.99 -5.02 17.26 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 C -0.12 -1.84 5.22 -26.73 -0.14 -1.98 16 26 C -0.12 -1.47 5.61 -26.73 -0.15 -1.62 16 27 C -0.10 -1.17 9.36 -39.58 -0.37 -1.54 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 32 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 33 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 34 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 35 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.10 0.78 8.08 -51.93 -0.42 0.36 16 37 H 0.10 0.92 8.09 -51.93 -0.42 0.50 16 38 H 0.40 4.30 6.87 -40.82 -0.28 4.02 16 39 H 0.08 1.10 7.58 -51.92 -0.39 0.71 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.05 0.94 7.60 -51.93 -0.39 0.55 16 44 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 45 H 0.38 9.79 7.80 -40.82 -0.32 9.47 16 46 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 48 H 0.06 0.78 6.51 -51.93 -0.34 0.44 16 49 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 50 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 51 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 408.05 15.07 6.15 6.15 Total: -1.00 -32.51 408.05 -11.22 -43.73 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -8.87 Total: 10.89 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -3.79 Total: -15.26 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.22 Total: -53.81 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.51 -11.22 -43.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026517341.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.425 kcal (2) G-P(sol) polarization free energy of solvation -32.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds