Wall clock time and date at job start Tue Mar 31 2020 16:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47008 * 2 1 4 4 C 1.38253 * 119.99890 * 270.01705 * 3 2 1 5 5 C 1.38212 * 119.99859 * 179.97438 * 4 3 2 6 6 C 1.38255 * 120.00284 * 0.02562 * 5 4 3 7 7 C 1.38217 * 119.99740 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99801 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.46977 * 269.95092 * 8 7 6 10 10 O 1.21285 * 119.99654 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00030 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00008 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47348 * 275.00035 * 12 11 9 14 14 C 1.53004 * 109.47134 * 300.00244 * 13 12 11 15 15 C 1.52994 * 109.46758 * 299.99981 * 14 13 12 16 16 N 1.46497 * 109.47041 * 180.02562 * 15 14 13 17 17 C 1.36937 * 120.00269 * 84.99519 * 16 15 14 18 18 H 1.08002 * 120.00027 * 0.02562 * 17 16 15 19 19 C 1.38816 * 120.00073 * 180.02562 * 17 16 15 20 20 N 1.31621 * 119.99838 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00155 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47038 * 89.99712 * 21 19 17 23 23 H 1.48499 * 109.47124 * 209.99721 * 21 19 17 24 24 H 1.48500 * 109.46720 * 330.00118 * 21 19 17 25 25 C 1.52998 * 109.47710 * 59.99812 * 15 14 13 26 26 C 1.52999 * 109.46865 * 300.00034 * 25 15 14 27 27 C 1.38215 * 119.99815 * 89.99868 * 3 2 1 28 28 H 1.09005 * 109.47028 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47213 * 299.99878 * 1 2 3 30 30 H 1.09000 * 109.47148 * 60.00017 * 1 2 3 31 31 H 1.08990 * 109.47328 * 239.99584 * 2 1 3 32 32 H 1.09006 * 109.47142 * 119.99509 * 2 1 3 33 33 H 1.08002 * 120.00364 * 0.02562 * 4 3 2 34 34 H 1.08000 * 119.99961 * 180.02562 * 5 4 3 35 35 H 1.07997 * 120.00435 * 180.02562 * 6 5 4 36 36 H 1.08994 * 109.46953 * 29.94909 * 8 7 6 37 37 H 1.08996 * 109.46834 * 149.95334 * 8 7 6 38 38 H 0.96993 * 119.99915 * 359.97438 * 11 9 8 39 39 H 1.09007 * 109.47394 * 34.99513 * 12 11 9 40 40 H 1.09004 * 109.46882 * 59.99996 * 13 12 11 41 41 H 1.08998 * 109.47421 * 179.97438 * 13 12 11 42 42 H 1.08996 * 109.47183 * 179.97438 * 14 13 12 43 43 H 1.09001 * 109.46901 * 59.99823 * 14 13 12 44 44 H 1.09001 * 109.47286 * 299.99607 * 15 14 13 45 45 H 0.97004 * 119.99952 * 264.99562 * 16 15 14 46 46 H 0.96998 * 119.99759 * 180.02562 * 20 19 17 47 47 H 1.08995 * 109.47491 * 180.02562 * 25 15 14 48 48 H 1.09001 * 109.46914 * 59.99567 * 25 15 14 49 49 H 1.08998 * 109.47376 * 299.99805 * 26 25 15 50 50 H 1.09005 * 109.47358 * 179.97438 * 26 25 15 51 51 H 1.07995 * 120.00164 * 359.72517 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0727 -1.1973 5 6 2.7225 3.3759 -1.1973 6 6 2.9533 4.0276 0.0000 7 6 2.7243 3.3756 1.1970 8 6 2.9764 4.0857 2.5021 9 6 4.3998 3.8483 2.9363 10 8 5.1371 3.1697 2.2530 11 7 4.8535 4.3901 4.0840 12 6 6.2371 4.1589 4.5064 13 6 6.3232 2.8352 5.2689 14 6 5.4173 2.8962 6.5004 15 6 5.8705 4.0395 7.4106 16 7 5.0036 4.0976 8.5901 17 6 5.2686 3.3043 9.6743 18 1 6.1169 2.6361 9.6601 19 6 4.4468 3.3590 10.7918 20 7 3.4132 4.1737 10.8093 21 14 4.8086 2.2773 12.2712 22 1 5.7086 3.0008 13.2050 23 1 3.5381 1.9463 12.9649 24 1 5.4670 1.0252 11.8196 25 6 5.7845 5.3632 6.6482 26 6 6.6903 5.3021 5.4166 27 6 2.2626 2.0724 1.1970 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8898 32 1 1.8933 -0.5138 0.8901 33 1 2.0817 1.5638 -2.1327 34 1 2.9019 3.8853 -2.1326 35 1 3.3125 5.0461 0.0000 36 1 2.8097 5.1549 2.3720 37 1 2.2959 3.7017 3.2620 38 1 4.2640 4.9331 4.6302 39 1 6.8824 4.1153 3.6290 40 1 6.0003 2.0208 4.6204 41 1 7.3527 2.6630 5.5827 42 1 5.4783 1.9531 7.0434 43 1 4.3879 3.0683 6.1861 44 1 6.8999 3.8675 7.7249 45 1 4.2418 4.6980 8.6030 46 1 2.8392 4.2122 11.5903 47 1 6.1078 6.1776 7.2964 48 1 4.7551 5.5352 6.3338 49 1 7.7197 5.1301 5.7309 50 1 6.6288 6.2450 4.8731 51 1 2.0784 1.5648 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026517341.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:58 Heat of formation + Delta-G solvation = -48.818146 kcal Electronic energy + Delta-G solvation = -28005.789193 eV Core-core repulsion = 24288.933603 eV Total energy + Delta-G solvation = -3716.855591 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.34516 -40.28959 -39.06058 -36.26924 -35.30890 -34.29421 -33.36840 -32.32437 -31.68915 -30.41287 -29.49561 -28.12930 -25.60608 -24.80245 -23.55027 -23.27083 -22.46683 -22.08992 -20.93770 -20.15180 -19.06477 -18.20264 -17.41179 -16.96749 -16.81309 -16.70218 -16.17889 -15.88754 -15.68880 -15.29598 -15.15292 -14.95682 -14.62844 -14.56871 -14.43585 -14.05023 -13.88904 -13.78925 -13.55014 -13.10240 -13.07844 -13.00171 -12.86920 -12.81114 -12.74775 -12.59186 -12.16018 -12.14533 -12.02020 -11.99765 -11.71592 -11.67511 -11.62927 -11.30056 -11.09309 -10.88684 -10.81524 -9.95249 -9.66917 -9.47936 -8.96917 -7.93446 -5.20159 0.44362 0.52432 1.46748 1.47253 1.55524 1.71478 2.30635 2.56447 2.92793 3.39746 3.69051 3.75634 3.82905 3.85873 3.91884 3.99826 4.09598 4.23746 4.28267 4.33042 4.36628 4.39472 4.40086 4.49797 4.58443 4.61469 4.62168 4.67440 4.69481 4.70193 4.78760 4.85044 5.01275 5.03253 5.07478 5.12224 5.17335 5.20870 5.23376 5.27006 5.32263 5.36867 5.49807 5.58018 5.58805 5.63895 5.66663 5.68187 5.74652 6.15854 6.30238 6.63624 7.33238 7.36201 8.14320 8.36775 9.29894 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014060 B = 0.002445 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.941065 B =11449.916534 C =12671.841040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 C -0.092 4.092 4 C -0.129 4.129 5 C -0.123 4.123 6 C -0.125 4.125 7 C -0.073 4.073 8 C -0.102 4.102 9 C 0.515 3.485 10 O -0.578 6.578 11 N -0.713 5.713 12 C 0.153 3.847 13 C -0.119 4.119 14 C -0.118 4.118 15 C 0.172 3.828 16 N -0.736 5.736 17 C -0.235 4.235 18 H 0.070 0.930 19 C -0.075 4.075 20 N -0.968 5.968 21 Si 0.966 3.034 22 H -0.287 1.287 23 H -0.296 1.296 24 H -0.274 1.274 25 C -0.115 4.115 26 C -0.109 4.109 27 C -0.125 4.125 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.113 0.887 38 H 0.409 0.591 39 H 0.082 0.918 40 H 0.045 0.955 41 H 0.075 0.925 42 H 0.029 0.971 43 H 0.048 0.952 44 H 0.038 0.962 45 H 0.373 0.627 46 H 0.250 0.750 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.086 0.914 50 H 0.090 0.910 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.071 0.668 -25.308 25.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.092 4.092 4 C -0.147 4.147 5 C -0.141 4.141 6 C -0.142 4.142 7 C -0.074 4.074 8 C -0.141 4.141 9 C 0.302 3.698 10 O -0.457 6.457 11 N -0.365 5.365 12 C 0.048 3.952 13 C -0.158 4.158 14 C -0.158 4.158 15 C 0.064 3.936 16 N -0.375 5.375 17 C -0.367 4.367 18 H 0.088 0.912 19 C -0.268 4.268 20 N -0.619 5.619 21 Si 0.795 3.205 22 H -0.214 1.214 23 H -0.223 1.223 24 H -0.199 1.199 25 C -0.153 4.153 26 C -0.147 4.147 27 C -0.143 4.143 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.132 0.868 38 H 0.247 0.753 39 H 0.100 0.900 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.048 0.952 43 H 0.067 0.933 44 H 0.056 0.944 45 H 0.205 0.795 46 H 0.059 0.941 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.105 0.895 50 H 0.108 0.892 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.443 0.067 -25.657 25.697 hybrid contribution -0.495 -0.370 1.624 1.738 sum -1.938 -0.303 -24.032 24.112 Atomic orbital electron populations 1.21715 0.93864 1.02379 1.01981 1.20580 0.96859 0.91769 1.03113 1.20112 0.98943 0.97013 0.93123 1.21276 1.00225 0.95293 0.97913 1.21390 0.98997 0.95126 0.98558 1.21211 1.00158 1.00779 0.92102 1.19472 0.98922 0.94480 0.94482 1.20751 0.93095 1.04181 0.96094 1.20922 0.90040 0.78475 0.80345 1.90689 1.59436 1.40255 1.55366 1.46123 1.13966 1.53053 1.23377 1.20868 0.82931 0.94580 0.96789 1.21829 1.00441 0.97520 0.96046 1.21979 0.99005 0.99238 0.95576 1.20460 0.93166 0.93915 0.86027 1.42614 1.32622 1.48483 1.13821 1.19568 1.08185 1.15224 0.93696 0.91223 1.25461 0.98241 1.01857 1.01203 1.69792 1.19068 1.42522 1.30511 0.85251 0.76457 0.78763 0.79998 1.21430 1.22293 1.19886 1.21687 1.00256 0.96779 0.96580 1.21727 1.00240 0.98133 0.94641 1.21030 1.00648 0.94560 0.98056 0.91269 0.93277 0.92223 0.90029 0.91616 0.84427 0.83996 0.85012 0.85223 0.86840 0.75334 0.89992 0.93616 0.90635 0.95203 0.93281 0.94411 0.79491 0.94132 0.91905 0.91728 0.89536 0.89163 0.86787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.89 71.98 0.71 -1.28 16 2 C -0.09 -1.42 6.06 29.85 0.18 -1.24 16 3 C -0.09 -1.90 5.13 -19.87 -0.10 -2.00 16 4 C -0.13 -2.39 9.70 22.27 0.22 -2.17 16 5 C -0.12 -2.24 10.05 22.27 0.22 -2.02 16 6 C -0.12 -2.50 9.70 22.27 0.22 -2.29 16 7 C -0.07 -1.62 4.37 -19.86 -0.09 -1.71 16 8 C -0.10 -1.91 5.83 29.10 0.17 -1.74 16 9 C 0.51 12.84 7.79 87.66 0.68 13.52 16 10 O -0.58 -19.16 15.70 -3.05 -0.05 -19.21 16 11 N -0.71 -15.94 4.23 -442.53 -1.87 -17.81 16 12 C 0.15 3.67 2.78 44.99 0.13 3.79 16 13 C -0.12 -3.42 5.60 30.60 0.17 -3.25 16 14 C -0.12 -4.11 5.34 30.59 0.16 -3.95 16 15 C 0.17 6.38 2.77 44.99 0.12 6.51 16 16 N -0.74 -35.77 5.12 -322.95 -1.65 -37.43 16 17 C -0.23 -12.88 9.93 84.03 0.83 -12.05 16 18 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 19 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 20 N -0.97 -58.40 13.06 21.65 0.28 -58.11 16 21 Si 0.97 46.14 29.55 68.60 2.03 48.17 16 22 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 23 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 24 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 25 C -0.11 -3.19 5.22 30.59 0.16 -3.03 16 26 C -0.11 -2.30 5.61 30.59 0.17 -2.13 16 27 C -0.12 -2.90 9.36 22.27 0.21 -2.69 16 28 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 1.14 8.08 -2.39 -0.02 1.12 16 32 H 0.07 1.15 8.09 -2.38 -0.02 1.13 16 33 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 34 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 35 H 0.13 2.15 8.06 -2.91 -0.02 2.13 16 36 H 0.13 1.66 8.08 -2.39 -0.02 1.64 16 37 H 0.11 1.89 8.09 -2.39 -0.02 1.87 16 38 H 0.41 7.87 6.87 -92.71 -0.64 7.23 16 39 H 0.08 2.05 7.58 -2.38 -0.02 2.04 16 40 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.05 1.73 7.60 -2.39 -0.02 1.72 16 44 H 0.04 1.47 8.08 -2.39 -0.02 1.45 16 45 H 0.37 19.30 7.80 -92.71 -0.72 18.57 16 46 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 47 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.06 1.68 6.51 -2.39 -0.02 1.67 16 49 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 50 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 51 H 0.11 2.61 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -70.64 408.05 2.92 -67.72 By element: Atomic # 1 Polarization: 38.66 SS G_CDS: -0.45 Total: 38.21 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: 4.64 Total: -21.54 kcal Atomic # 7 Polarization: -110.11 SS G_CDS: -3.24 Total: -113.35 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.05 Total: -19.21 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -70.64 2.92 -67.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026517341.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.898 kcal (2) G-P(sol) polarization free energy of solvation -70.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds