Wall clock time and date at job start Tue Mar 31 2020 16:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50695 * 109.47326 * 2 1 4 4 C 1.38262 * 119.99771 * 264.99788 * 3 2 1 5 5 C 1.38216 * 119.99882 * 180.02562 * 4 3 2 6 6 C 1.38254 * 120.00290 * 359.97438 * 5 4 3 7 7 C 1.38217 * 119.99802 * 359.97438 * 6 5 4 8 8 C 1.38208 * 120.00509 * 84.72032 * 3 2 1 9 9 C 1.50703 * 119.99916 * 0.02562 * 8 3 2 10 10 C 1.50700 * 109.47248 * 84.99892 * 9 8 3 11 11 O 1.21282 * 119.99943 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00264 * 180.02562 * 10 9 8 13 13 C 1.46930 * 120.62801 * 359.97438 * 12 10 9 14 14 C 1.53190 * 108.77436 * 233.58466 * 13 12 10 15 15 C 1.53045 * 109.31494 * 305.36624 * 14 13 12 16 16 C 1.53034 * 109.53721 * 61.36591 * 15 14 13 17 17 H 1.08996 * 109.50274 * 58.58508 * 16 15 14 18 18 N 1.46499 * 109.49969 * 178.65451 * 16 15 14 19 19 C 1.46498 * 120.00005 * 59.99450 * 18 16 15 20 20 C 1.36935 * 119.99827 * 239.99953 * 18 16 15 21 21 H 1.07998 * 120.00077 * 22.06996 * 20 18 16 22 22 C 1.38812 * 120.00257 * 202.06054 * 20 18 16 23 23 N 1.31628 * 119.99573 * 12.40939 * 22 20 18 24 24 Si 1.86795 * 120.00543 * 192.40133 * 22 20 18 25 25 H 1.48501 * 109.46792 * 60.00506 * 24 22 20 26 26 H 1.48504 * 109.47252 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47288 * 300.00618 * 24 22 20 28 28 C 1.46921 * 120.63288 * 179.71753 * 12 10 9 29 29 H 1.09000 * 109.47192 * 60.00606 * 1 2 3 30 30 H 1.09000 * 109.47496 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47566 * 300.00471 * 1 2 3 32 32 H 1.08993 * 109.47356 * 239.99490 * 2 1 3 33 33 H 1.09004 * 109.46492 * 119.99506 * 2 1 3 34 34 H 1.08001 * 119.99737 * 359.97438 * 4 3 2 35 35 H 1.08000 * 119.99562 * 179.97438 * 5 4 3 36 36 H 1.07996 * 120.00258 * 179.97438 * 6 5 4 37 37 H 1.07999 * 119.99829 * 179.97438 * 7 6 5 38 38 H 1.09000 * 109.47287 * 205.00115 * 9 8 3 39 39 H 1.08997 * 109.47186 * 324.99871 * 9 8 3 40 40 H 1.08995 * 109.59062 * 353.37214 * 13 12 10 41 41 H 1.09008 * 109.58678 * 113.79780 * 13 12 10 42 42 H 1.08994 * 109.49915 * 65.31899 * 14 13 12 43 43 H 1.09008 * 109.49745 * 185.41721 * 14 13 12 44 44 H 1.08993 * 109.46058 * 181.38766 * 15 14 13 45 45 H 1.09001 * 109.45560 * 301.36032 * 15 14 13 46 46 H 1.09004 * 109.47231 * 94.31244 * 19 18 16 47 47 H 1.09000 * 109.47481 * 214.31027 * 19 18 16 48 48 H 1.08996 * 109.47315 * 334.31321 * 19 18 16 49 49 H 0.96995 * 119.99829 * 179.97438 * 23 22 20 50 50 H 1.09001 * 109.59003 * 246.20280 * 28 12 10 51 51 H 1.08991 * 109.58845 * 6.62772 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3612 2.0377 -1.1929 5 6 2.8225 3.3406 -1.1928 6 6 2.9545 4.0272 -0.0001 7 6 2.6248 3.4108 1.1922 8 6 2.1589 2.1091 1.1918 9 6 1.7951 1.4386 2.4915 10 6 2.9724 0.6427 2.9930 11 8 4.0051 0.6216 2.3574 12 7 2.8774 -0.0464 4.1473 13 6 1.6329 -0.0310 4.9281 14 6 1.9573 0.3905 6.3647 15 6 3.0422 -0.5295 6.9294 16 6 4.3139 -0.3974 6.0884 17 1 4.6491 0.6397 6.0960 18 7 5.3619 -1.2541 6.6486 19 6 5.1513 -2.7006 6.7462 20 6 6.5384 -0.7028 7.0813 21 1 6.5788 0.3429 7.3479 22 6 7.6790 -1.4881 7.1772 23 7 7.7019 -2.6850 6.6300 24 14 9.1815 -0.8463 8.0828 25 1 8.8232 -0.5600 9.4952 26 1 10.2580 -1.8684 8.0421 27 1 9.6577 0.3999 7.4306 28 6 4.0145 -0.8319 4.6459 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 2.2584 1.5011 -2.1245 35 1 3.0798 3.8223 -2.1246 36 1 3.3153 5.0451 -0.0001 37 1 2.7283 3.9470 2.1240 38 1 1.5278 2.1958 3.2286 39 1 0.9475 0.7721 2.3317 40 1 0.9340 0.6801 4.4877 41 1 1.1907 -1.0273 4.9306 42 1 2.3146 1.4201 6.3699 43 1 1.0595 0.3133 6.9781 44 1 3.2574 -0.2473 7.9599 45 1 2.6938 -1.5620 6.9007 46 1 5.5700 -3.1889 5.8662 47 1 5.6441 -3.0801 7.6412 48 1 4.0830 -2.9091 6.8035 49 1 8.4990 -3.2336 6.6967 50 1 3.7630 -1.8923 4.6259 51 1 4.8875 -0.6494 4.0194 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027459672.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:40 Heat of formation + Delta-G solvation = 3.492729 kcal Electronic energy + Delta-G solvation = -29129.111178 eV Core-core repulsion = 25414.523957 eV Total energy + Delta-G solvation = -3714.587221 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.38531 -39.17060 -37.29111 -35.05401 -34.40018 -32.75051 -32.17700 -31.23109 -29.63694 -29.00638 -27.52633 -25.99024 -24.86832 -23.93566 -23.45646 -22.07940 -21.63579 -20.71993 -19.42955 -18.51743 -17.03691 -16.69311 -16.50750 -16.15960 -15.49026 -15.17931 -14.85548 -14.60218 -14.13160 -13.96964 -13.85669 -13.65694 -13.63115 -13.35742 -13.06085 -12.94613 -12.75539 -12.59807 -12.31993 -12.16039 -11.92314 -11.87514 -11.81050 -11.39820 -11.15688 -11.01793 -10.86009 -10.77395 -10.75497 -10.60580 -10.38827 -10.33584 -10.17056 -9.83756 -9.74808 -9.52724 -8.79949 -8.58938 -8.55958 -8.26834 -6.74172 -5.70335 -3.16047 1.31625 1.39267 2.88945 3.24904 3.41844 3.46393 3.47493 3.77244 4.50822 4.56234 4.67021 4.77675 4.82159 4.88446 4.97356 5.05662 5.11858 5.16445 5.23184 5.29954 5.31882 5.41105 5.45829 5.48491 5.54338 5.56814 5.60475 5.75253 5.77733 5.80461 5.92341 5.94447 6.01827 6.05670 6.13567 6.14533 6.24719 6.39165 6.45212 6.48216 6.52154 6.63252 6.70847 6.80060 6.94760 6.99220 7.01748 7.40130 7.72500 7.73700 7.83047 8.40846 8.48950 9.25558 9.88193 10.36459 11.34510 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014935 B = 0.003014 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.279734 B = 9286.638122 C =10022.242040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.064 4.064 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.125 4.125 7 C -0.104 4.104 8 C -0.060 4.060 9 C -0.106 4.106 10 C 0.511 3.489 11 O -0.530 6.530 12 N -0.609 5.609 13 C 0.107 3.893 14 C -0.131 4.131 15 C -0.133 4.133 16 C 0.169 3.831 17 H 0.064 0.936 18 N -0.592 5.592 19 C 0.162 3.838 20 C -0.257 4.257 21 H 0.068 0.932 22 C 0.003 3.997 23 N -0.907 5.907 24 Si 0.906 3.094 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.283 1.283 28 C 0.099 3.901 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.028 0.972 47 H 0.044 0.956 48 H -0.001 1.001 49 H 0.253 0.747 50 H 0.060 0.940 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.026 8.420 -10.702 23.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.064 4.064 4 C -0.137 4.137 5 C -0.138 4.138 6 C -0.143 4.143 7 C -0.122 4.122 8 C -0.060 4.060 9 C -0.145 4.145 10 C 0.298 3.702 11 O -0.406 6.406 12 N -0.343 5.343 13 C -0.016 4.016 14 C -0.170 4.170 15 C -0.173 4.173 16 C 0.060 3.940 17 H 0.082 0.918 18 N -0.313 5.313 19 C 0.018 3.982 20 C -0.386 4.386 21 H 0.086 0.914 22 C -0.195 4.195 23 N -0.552 5.552 24 Si 0.736 3.264 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.209 1.209 28 C -0.025 4.025 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.046 0.954 47 H 0.063 0.937 48 H 0.017 0.983 49 H 0.063 0.937 50 H 0.078 0.922 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.286 8.238 -11.023 22.886 hybrid contribution 0.957 0.234 0.529 1.118 sum -17.329 8.473 -10.494 21.959 Atomic orbital electron populations 1.21768 0.94773 1.01749 1.02034 1.20566 0.95839 0.92961 1.03285 1.19654 0.98450 0.95618 0.92638 1.20959 1.00316 0.95191 0.97280 1.21078 0.99932 0.94858 0.97967 1.21050 1.00754 0.99950 0.92563 1.20979 0.98514 0.94557 0.98162 1.19156 0.99718 0.93957 0.93182 1.20793 0.98006 1.00033 0.95697 1.20406 0.89253 0.79777 0.80752 1.90739 1.30805 1.62778 1.56323 1.48317 1.14816 1.49091 1.22100 1.21736 0.86051 1.01576 0.92247 1.21907 0.99514 1.00493 0.95083 1.22085 0.95887 0.98914 1.00396 1.20699 0.88577 0.95436 0.89294 0.91822 1.43932 1.14209 1.02948 1.70257 1.20787 0.93092 0.83409 1.00943 1.19186 0.86472 0.95471 1.37478 0.91439 1.25019 0.97364 0.97155 0.99975 1.70063 1.28398 1.10634 1.46068 0.86315 0.82493 0.77874 0.79737 1.21098 1.21619 1.20917 1.22599 0.88139 0.94023 0.97707 0.92540 0.92307 0.92565 0.91001 0.90903 0.86321 0.86350 0.86256 0.86248 0.88317 0.88094 0.90433 0.91523 0.91765 0.91279 0.91743 0.92268 0.95363 0.93718 0.98295 0.93682 0.92209 0.89136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.72 37.16 0.36 -0.83 16 2 C -0.09 -0.96 5.38 -27.89 -0.15 -1.11 16 3 C -0.06 -0.78 5.13 -104.63 -0.54 -1.32 16 4 C -0.12 -1.36 9.68 -39.58 -0.38 -1.74 16 5 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 6 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 7 C -0.10 -1.27 9.68 -39.58 -0.38 -1.66 16 8 C -0.06 -0.76 4.37 -104.62 -0.46 -1.22 16 9 C -0.11 -1.21 3.51 -29.03 -0.10 -1.31 16 10 C 0.51 8.17 6.90 -10.99 -0.08 8.09 16 11 O -0.53 -10.99 15.45 5.56 0.09 -10.91 16 12 N -0.61 -9.41 2.97 -172.53 -0.51 -9.93 16 13 C 0.11 1.21 6.34 -3.71 -0.02 1.18 16 14 C -0.13 -1.58 6.08 -26.61 -0.16 -1.74 16 15 C -0.13 -2.16 5.13 -26.69 -0.14 -2.30 16 16 C 0.17 3.46 2.75 -67.61 -0.19 3.27 16 17 H 0.06 1.39 7.86 -51.93 -0.41 0.98 16 18 N -0.59 -14.79 2.82 -173.12 -0.49 -15.28 16 19 C 0.16 3.96 7.91 59.85 0.47 4.43 16 20 C -0.26 -7.14 9.60 -15.06 -0.14 -7.28 16 21 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 22 C 0.00 0.09 5.11 -17.43 -0.09 0.00 16 23 N -0.91 -26.73 10.63 55.49 0.59 -26.14 16 24 Si 0.91 22.24 29.57 -169.99 -5.03 17.21 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 28 C 0.10 1.93 5.81 -3.50 -0.02 1.91 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.43 6.77 -51.93 -0.35 0.08 16 32 H 0.07 0.73 8.05 -51.93 -0.42 0.31 16 33 H 0.07 0.91 6.43 -51.93 -0.33 0.57 16 34 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.10 0.92 7.60 -51.93 -0.39 0.52 16 39 H 0.10 0.94 5.40 -51.93 -0.28 0.66 16 40 H 0.08 0.64 5.93 -51.93 -0.31 0.34 16 41 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.06 0.96 6.72 -51.93 -0.35 0.61 16 46 H 0.03 0.75 7.41 -51.93 -0.39 0.37 16 47 H 0.04 1.18 7.20 -51.93 -0.37 0.80 16 48 H 0.00 -0.03 6.46 -51.93 -0.34 -0.36 16 49 H 0.25 7.26 8.31 -40.82 -0.34 6.93 16 50 H 0.06 1.17 7.53 -51.93 -0.39 0.78 16 51 H 0.09 2.12 7.00 -51.93 -0.36 1.76 16 LS Contribution 393.53 15.07 5.93 5.93 Total: -1.00 -33.12 393.53 -10.70 -43.82 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -8.47 Total: 0.40 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -2.81 Total: -5.11 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.41 Total: -51.35 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.12 -10.70 -43.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027459672.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.314 kcal (2) G-P(sol) polarization free energy of solvation -33.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds