Wall clock time and date at job start Tue Mar 31 2020 16:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47017 * 2 1 4 4 C 1.38261 * 119.99773 * 269.98125 * 3 2 1 5 5 C 1.38215 * 119.99864 * 179.97438 * 4 3 2 6 6 C 1.38255 * 119.99958 * 359.84797 * 5 4 3 7 7 C 1.38221 * 119.99956 * 0.40221 * 6 5 4 8 8 C 1.50700 * 119.99936 * 179.80489 * 7 6 5 9 9 C 1.50698 * 109.47451 * 269.72785 * 8 7 6 10 10 O 1.21285 * 119.99970 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00229 * 180.02562 * 9 8 7 12 12 C 1.46925 * 120.62651 * 359.97438 * 11 9 8 13 13 C 1.53193 * 108.77481 * 126.41533 * 12 11 9 14 14 C 1.53046 * 109.31158 * 54.62908 * 13 12 11 15 15 C 1.53037 * 109.54114 * 298.63914 * 14 13 12 16 16 H 1.09001 * 109.49519 * 301.41017 * 15 14 13 17 17 N 1.46499 * 109.52468 * 181.32871 * 15 14 13 18 18 C 1.46504 * 120.00274 * 300.08521 * 17 15 14 19 19 C 1.36939 * 119.99985 * 120.07863 * 17 15 14 20 20 H 1.08006 * 119.99611 * 22.00284 * 19 17 15 21 21 C 1.38813 * 120.00432 * 202.00489 * 19 17 15 22 22 N 1.31622 * 119.99552 * 12.68134 * 21 19 17 23 23 Si 1.86796 * 120.00098 * 192.68369 * 21 19 17 24 24 H 1.48500 * 109.46834 * 90.00348 * 23 21 19 25 25 H 1.48502 * 109.46977 * 209.99928 * 23 21 19 26 26 H 1.48496 * 109.47359 * 330.00190 * 23 21 19 27 27 C 1.46920 * 120.63029 * 179.97438 * 11 9 8 28 28 C 1.38212 * 120.00004 * 90.00014 * 3 2 1 29 29 H 1.09000 * 109.47280 * 299.99516 * 1 2 3 30 30 H 1.08995 * 109.47493 * 60.00197 * 1 2 3 31 31 H 1.09005 * 109.46928 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47046 * 240.00006 * 2 1 3 33 33 H 1.08999 * 109.47235 * 120.00233 * 2 1 3 34 34 H 1.07993 * 120.00297 * 359.97438 * 4 3 2 35 35 H 1.07995 * 119.99995 * 180.02562 * 5 4 3 36 36 H 1.08002 * 120.00251 * 180.21135 * 6 5 4 37 37 H 1.09002 * 109.46893 * 149.72679 * 8 7 6 38 38 H 1.08999 * 109.46974 * 29.73117 * 8 7 6 39 39 H 1.09000 * 109.58728 * 246.19758 * 12 11 9 40 40 H 1.08998 * 109.58847 * 6.62765 * 12 11 9 41 41 H 1.08995 * 109.50176 * 174.58484 * 13 12 11 42 42 H 1.09001 * 109.49599 * 294.68491 * 13 12 11 43 43 H 1.09004 * 109.45740 * 178.61396 * 14 13 12 44 44 H 1.09000 * 109.45801 * 58.66141 * 14 13 12 45 45 H 1.08995 * 109.46844 * 94.31932 * 18 17 15 46 46 H 1.08999 * 109.46682 * 214.32490 * 18 17 15 47 47 H 1.08998 * 109.46422 * 334.31933 * 18 17 15 48 48 H 0.96997 * 119.99770 * 179.97438 * 22 21 19 49 49 H 1.09005 * 109.58524 * 113.80169 * 27 11 9 50 50 H 1.08996 * 109.70332 * 353.44543 * 27 11 9 51 51 H 1.07995 * 120.00111 * 359.97390 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2631 2.0724 -1.1974 5 6 2.7233 3.3757 -1.1974 6 6 2.9498 4.0288 -0.0001 7 6 2.7241 3.3757 1.1969 8 6 2.9752 4.0861 2.5020 9 6 4.3982 3.8486 2.9376 10 8 5.1357 3.1689 2.2557 11 7 4.8509 4.3906 4.0855 12 6 3.9693 5.2158 4.9224 13 6 3.9774 4.6561 6.3484 14 6 5.4207 4.5699 6.8501 15 6 6.2184 3.6200 5.9538 16 1 5.7511 2.6352 5.9605 17 7 7.5915 3.5131 6.4530 18 6 8.4340 4.7084 6.5414 19 6 8.0876 2.2959 6.8372 20 1 7.6402 1.3875 6.4615 21 6 9.1653 2.2296 7.7095 22 7 9.5520 3.3061 8.3607 23 14 10.0667 0.6127 7.9591 24 1 11.1747 0.5068 6.9761 25 1 10.6203 0.5620 9.3362 26 1 9.1219 -0.5161 7.7636 27 6 6.2355 4.1676 4.5236 28 6 2.2627 2.0724 1.1970 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.0838 1.5631 -2.1327 35 1 2.9032 3.8848 -2.1327 36 1 3.3062 5.0484 -0.0001 37 1 2.2939 3.7025 3.2615 38 1 2.8088 5.1554 2.3714 39 1 4.3312 6.2439 4.9315 40 1 2.9551 5.1867 4.5242 41 1 3.4041 5.3144 7.0010 42 1 3.5313 3.6615 6.3514 43 1 5.4276 4.1950 7.8736 44 1 5.8741 5.5607 6.8236 45 1 8.3667 5.1268 7.5456 46 1 9.4687 4.4402 6.3279 47 1 8.0932 5.4474 5.8162 48 1 10.3049 3.2596 8.9706 49 1 6.7825 5.1101 4.5000 50 1 6.7186 3.4481 3.8627 51 1 2.0823 1.5634 2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027468628.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:43 Heat of formation + Delta-G solvation = 0.700606 kcal Electronic energy + Delta-G solvation = -28475.567121 eV Core-core repulsion = 24760.858825 eV Total energy + Delta-G solvation = -3714.708296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.27049 -39.24819 -37.37471 -35.07420 -34.56945 -32.68032 -32.13681 -31.28734 -29.69494 -29.02567 -27.55091 -25.99619 -24.84602 -24.09253 -23.51239 -22.15806 -21.62325 -20.73861 -19.39172 -18.50840 -17.05988 -16.69167 -16.61630 -15.94287 -15.65811 -15.21755 -14.85955 -14.73114 -14.08954 -13.96989 -13.96086 -13.82036 -13.59769 -13.30973 -13.19967 -12.94455 -12.75328 -12.66600 -12.31088 -12.20180 -11.98172 -11.93139 -11.83948 -11.42225 -11.07517 -10.99806 -10.89654 -10.88447 -10.83442 -10.63656 -10.39500 -10.29301 -10.10603 -9.86421 -9.78459 -9.57073 -8.82676 -8.65685 -8.59035 -8.30466 -6.75058 -5.70901 -3.16608 1.27503 1.35452 2.83019 3.19375 3.40844 3.47117 3.48527 3.73070 4.50043 4.52299 4.57589 4.72945 4.74095 4.95530 4.96951 5.02427 5.10903 5.15555 5.17970 5.30323 5.31240 5.34174 5.44084 5.45960 5.51218 5.54401 5.59497 5.69665 5.69822 5.78995 5.87301 5.91570 6.00045 6.01476 6.04718 6.16989 6.24338 6.38742 6.40045 6.50121 6.53108 6.55838 6.67514 6.80921 6.94450 6.96598 7.01468 7.40281 7.66447 7.73543 7.83353 8.38452 8.43838 9.25108 9.87765 10.35792 11.33945 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014355 B = 0.002700 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.028130 B =10366.169636 C =11278.058410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.058 4.058 8 C -0.102 4.102 9 C 0.512 3.488 10 O -0.534 6.534 11 N -0.607 5.607 12 C 0.107 3.893 13 C -0.133 4.133 14 C -0.132 4.132 15 C 0.170 3.830 16 H 0.064 0.936 17 N -0.593 5.593 18 C 0.162 3.838 19 C -0.253 4.253 20 H 0.068 0.932 21 C 0.002 3.998 22 N -0.908 5.908 23 Si 0.905 3.095 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.097 3.903 28 C -0.102 4.102 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.029 0.971 46 H 0.043 0.957 47 H -0.002 1.002 48 H 0.252 0.748 49 H 0.062 0.938 50 H 0.089 0.911 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.865 3.245 -14.266 24.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.139 4.139 5 C -0.135 4.135 6 C -0.129 4.129 7 C -0.059 4.059 8 C -0.142 4.142 9 C 0.299 3.701 10 O -0.410 6.410 11 N -0.341 5.341 12 C -0.016 4.016 13 C -0.171 4.171 14 C -0.172 4.172 15 C 0.061 3.939 16 H 0.082 0.918 17 N -0.315 5.315 18 C 0.018 3.982 19 C -0.383 4.383 20 H 0.086 0.914 21 C -0.196 4.196 22 N -0.554 5.554 23 Si 0.735 3.265 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.205 1.205 27 C -0.026 4.026 28 C -0.120 4.120 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.048 0.952 46 H 0.062 0.938 47 H 0.016 0.984 48 H 0.062 0.938 49 H 0.080 0.920 50 H 0.107 0.893 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.282 2.889 -14.492 24.293 hybrid contribution 0.667 -0.642 0.404 1.010 sum -18.615 2.246 -14.088 23.453 Atomic orbital electron populations 1.21741 0.94805 1.01601 1.02105 1.20545 0.96038 0.92780 1.02978 1.19822 0.99198 0.96066 0.93091 1.20967 1.00612 0.95013 0.97332 1.21044 0.99699 0.94988 0.97781 1.20941 0.99906 0.99996 0.92011 1.19289 0.98516 0.94368 0.93690 1.20723 0.95308 1.02141 0.96018 1.20424 0.89174 0.79699 0.80787 1.90726 1.58168 1.38578 1.53537 1.48210 1.13506 1.50678 1.21743 1.21759 0.93822 0.94526 0.91470 1.21938 0.98842 1.01291 0.95079 1.22120 0.93254 1.00881 1.00932 1.20561 0.86652 0.96880 0.89846 0.91821 1.43897 1.07204 1.05918 1.74471 1.20789 0.94230 0.86387 0.96797 1.19250 1.13142 0.84593 1.21299 0.91388 1.24987 1.00569 0.97169 0.96902 1.70075 1.28641 1.27459 1.29185 0.86236 0.79978 0.83264 0.76977 1.21472 1.21785 1.20495 1.22384 0.80224 1.01593 0.98444 1.20841 0.99587 0.93921 0.97632 0.92550 0.92670 0.92482 0.91101 0.90931 0.86429 0.86225 0.86397 0.88115 0.88211 0.91464 0.90347 0.91290 0.91801 0.91499 0.92471 0.95224 0.93776 0.98394 0.93796 0.91988 0.89293 0.86343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 37.16 0.37 -0.70 16 2 C -0.09 -0.76 6.06 -27.88 -0.17 -0.93 16 3 C -0.08 -0.90 5.13 -104.62 -0.54 -1.44 16 4 C -0.12 -1.27 9.70 -39.58 -0.38 -1.65 16 5 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 6 C -0.11 -1.27 9.70 -39.58 -0.38 -1.66 16 7 C -0.06 -0.71 4.37 -104.62 -0.46 -1.16 16 8 C -0.10 -1.10 4.18 -29.04 -0.12 -1.22 16 9 C 0.51 7.88 7.69 -10.99 -0.08 7.80 16 10 O -0.53 -10.62 15.45 5.55 0.09 -10.53 16 11 N -0.61 -9.12 2.97 -172.80 -0.51 -9.64 16 12 C 0.11 1.21 6.34 -3.71 -0.02 1.18 16 13 C -0.13 -1.66 6.08 -26.61 -0.16 -1.83 16 14 C -0.13 -2.28 5.15 -26.69 -0.14 -2.42 16 15 C 0.17 3.47 2.74 -67.83 -0.19 3.29 16 16 H 0.06 1.39 7.86 -51.93 -0.41 0.98 16 17 N -0.59 -14.85 2.82 -173.37 -0.49 -15.34 16 18 C 0.16 3.98 8.03 59.85 0.48 4.46 16 19 C -0.25 -7.05 9.60 -15.06 -0.14 -7.20 16 20 H 0.07 1.89 7.81 -52.48 -0.41 1.48 16 21 C 0.00 0.05 5.10 -17.43 -0.09 -0.04 16 22 N -0.91 -26.52 10.64 55.49 0.59 -25.93 16 23 Si 0.91 22.25 29.57 -169.99 -5.03 17.23 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 C 0.10 1.81 5.78 -3.74 -0.02 1.79 16 28 C -0.10 -1.22 9.36 -39.58 -0.37 -1.59 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 33 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 34 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 36 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.10 0.89 7.64 -51.93 -0.40 0.49 16 38 H 0.10 0.83 7.88 -51.93 -0.41 0.42 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.64 5.93 -51.93 -0.31 0.33 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.06 0.99 7.72 -51.93 -0.40 0.59 16 45 H 0.03 0.78 7.41 -51.93 -0.38 0.39 16 46 H 0.04 1.18 7.21 -51.93 -0.37 0.80 16 47 H 0.00 -0.05 6.35 -51.93 -0.33 -0.38 16 48 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 49 H 0.06 1.15 6.49 -51.93 -0.34 0.81 16 50 H 0.09 1.91 7.01 -51.93 -0.36 1.55 16 51 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 400.77 15.07 6.04 6.04 Total: -1.00 -32.90 400.77 -10.88 -43.78 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -8.75 Total: -0.66 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -2.82 Total: -4.96 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -0.41 Total: -50.90 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.23 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.90 -10.88 -43.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027468628.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.484 kcal (2) G-P(sol) polarization free energy of solvation -32.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds