Wall clock time and date at job start Tue Mar 31 2020 16:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47017 * 2 1 4 4 C 1.38261 * 119.99773 * 269.98125 * 3 2 1 5 5 C 1.38215 * 119.99864 * 179.97438 * 4 3 2 6 6 C 1.38255 * 119.99958 * 359.84797 * 5 4 3 7 7 C 1.38221 * 119.99956 * 0.40221 * 6 5 4 8 8 C 1.50700 * 119.99936 * 179.80489 * 7 6 5 9 9 C 1.50698 * 109.47451 * 269.72785 * 8 7 6 10 10 O 1.21285 * 119.99970 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00229 * 180.02562 * 9 8 7 12 12 C 1.46925 * 120.62651 * 359.97438 * 11 9 8 13 13 C 1.53193 * 108.77481 * 126.41533 * 12 11 9 14 14 C 1.53046 * 109.31158 * 54.62908 * 13 12 11 15 15 C 1.53037 * 109.54114 * 298.63914 * 14 13 12 16 16 H 1.09001 * 109.49519 * 301.41017 * 15 14 13 17 17 N 1.46499 * 109.52468 * 181.32871 * 15 14 13 18 18 C 1.46504 * 120.00274 * 300.08521 * 17 15 14 19 19 C 1.36939 * 119.99985 * 120.07863 * 17 15 14 20 20 H 1.08006 * 119.99611 * 22.00284 * 19 17 15 21 21 C 1.38813 * 120.00432 * 202.00489 * 19 17 15 22 22 N 1.31622 * 119.99552 * 12.68134 * 21 19 17 23 23 Si 1.86796 * 120.00098 * 192.68369 * 21 19 17 24 24 H 1.48500 * 109.46834 * 90.00348 * 23 21 19 25 25 H 1.48502 * 109.46977 * 209.99928 * 23 21 19 26 26 H 1.48496 * 109.47359 * 330.00190 * 23 21 19 27 27 C 1.46920 * 120.63029 * 179.97438 * 11 9 8 28 28 C 1.38212 * 120.00004 * 90.00014 * 3 2 1 29 29 H 1.09000 * 109.47280 * 299.99516 * 1 2 3 30 30 H 1.08995 * 109.47493 * 60.00197 * 1 2 3 31 31 H 1.09005 * 109.46928 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47046 * 240.00006 * 2 1 3 33 33 H 1.08999 * 109.47235 * 120.00233 * 2 1 3 34 34 H 1.07993 * 120.00297 * 359.97438 * 4 3 2 35 35 H 1.07995 * 119.99995 * 180.02562 * 5 4 3 36 36 H 1.08002 * 120.00251 * 180.21135 * 6 5 4 37 37 H 1.09002 * 109.46893 * 149.72679 * 8 7 6 38 38 H 1.08999 * 109.46974 * 29.73117 * 8 7 6 39 39 H 1.09000 * 109.58728 * 246.19758 * 12 11 9 40 40 H 1.08998 * 109.58847 * 6.62765 * 12 11 9 41 41 H 1.08995 * 109.50176 * 174.58484 * 13 12 11 42 42 H 1.09001 * 109.49599 * 294.68491 * 13 12 11 43 43 H 1.09004 * 109.45740 * 178.61396 * 14 13 12 44 44 H 1.09000 * 109.45801 * 58.66141 * 14 13 12 45 45 H 1.08995 * 109.46844 * 94.31932 * 18 17 15 46 46 H 1.08999 * 109.46682 * 214.32490 * 18 17 15 47 47 H 1.08998 * 109.46422 * 334.31933 * 18 17 15 48 48 H 0.96997 * 119.99770 * 179.97438 * 22 21 19 49 49 H 1.09005 * 109.58524 * 113.80169 * 27 11 9 50 50 H 1.08996 * 109.70332 * 353.44543 * 27 11 9 51 51 H 1.07995 * 120.00111 * 359.97390 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2631 2.0724 -1.1974 5 6 2.7233 3.3757 -1.1974 6 6 2.9498 4.0288 -0.0001 7 6 2.7241 3.3757 1.1969 8 6 2.9752 4.0861 2.5020 9 6 4.3982 3.8486 2.9376 10 8 5.1357 3.1689 2.2557 11 7 4.8509 4.3906 4.0855 12 6 3.9693 5.2158 4.9224 13 6 3.9774 4.6561 6.3484 14 6 5.4207 4.5699 6.8501 15 6 6.2184 3.6200 5.9538 16 1 5.7511 2.6352 5.9605 17 7 7.5915 3.5131 6.4530 18 6 8.4340 4.7084 6.5414 19 6 8.0876 2.2959 6.8372 20 1 7.6402 1.3875 6.4615 21 6 9.1653 2.2296 7.7095 22 7 9.5520 3.3061 8.3607 23 14 10.0667 0.6127 7.9591 24 1 11.1747 0.5068 6.9761 25 1 10.6203 0.5620 9.3362 26 1 9.1219 -0.5161 7.7636 27 6 6.2355 4.1676 4.5236 28 6 2.2627 2.0724 1.1970 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.0838 1.5631 -2.1327 35 1 2.9032 3.8848 -2.1327 36 1 3.3062 5.0484 -0.0001 37 1 2.2939 3.7025 3.2615 38 1 2.8088 5.1554 2.3714 39 1 4.3312 6.2439 4.9315 40 1 2.9551 5.1867 4.5242 41 1 3.4041 5.3144 7.0010 42 1 3.5313 3.6615 6.3514 43 1 5.4276 4.1950 7.8736 44 1 5.8741 5.5607 6.8236 45 1 8.3667 5.1268 7.5456 46 1 9.4687 4.4402 6.3279 47 1 8.0932 5.4474 5.8162 48 1 10.3049 3.2596 8.9706 49 1 6.7825 5.1101 4.5000 50 1 6.7186 3.4481 3.8627 51 1 2.0823 1.5634 2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027468628.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:42 Heat of formation + Delta-G solvation = -16.534644 kcal Electronic energy + Delta-G solvation = -28476.314497 eV Core-core repulsion = 24760.858825 eV Total energy + Delta-G solvation = -3715.455673 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.39571 -40.20043 -38.81105 -36.76207 -35.33454 -34.04956 -33.24171 -32.85064 -30.74145 -30.28564 -28.58964 -28.07060 -26.06598 -25.23466 -24.78053 -23.06264 -22.97356 -21.70923 -20.75501 -19.75341 -18.79490 -18.17602 -17.45221 -17.09801 -16.82757 -16.63708 -16.04035 -15.81108 -15.65903 -15.34426 -15.18943 -14.74572 -14.64063 -14.49047 -14.44176 -14.02116 -13.94894 -13.85407 -13.64209 -13.62464 -12.96223 -12.90890 -12.83721 -12.80215 -12.58332 -12.51633 -12.30365 -12.18239 -12.07317 -11.93580 -11.78873 -11.72042 -11.62838 -11.61456 -11.38917 -10.86292 -10.67697 -9.68604 -9.65133 -9.47174 -8.78167 -7.86059 -5.33848 0.44320 0.53335 1.42198 1.44389 1.52557 1.66714 2.03639 2.48514 2.88327 3.26558 3.60390 3.65486 3.76892 3.84648 3.98865 4.02933 4.11614 4.16761 4.23960 4.26655 4.30591 4.37441 4.39598 4.50692 4.56963 4.60107 4.64981 4.70926 4.73705 4.78390 4.80095 4.88822 4.91721 5.02244 5.05602 5.09421 5.15861 5.21645 5.24403 5.27427 5.38771 5.44358 5.49762 5.53379 5.59775 5.62286 5.68642 5.70420 5.75146 6.16449 6.29729 6.51205 7.11916 7.23319 7.83876 8.25922 9.16469 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014355 B = 0.002700 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.028130 B =10366.169636 C =11278.058410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 C -0.093 4.093 4 C -0.130 4.130 5 C -0.125 4.125 6 C -0.126 4.126 7 C -0.076 4.076 8 C -0.091 4.091 9 C 0.508 3.492 10 O -0.588 6.588 11 N -0.607 5.607 12 C 0.104 3.896 13 C -0.124 4.124 14 C -0.123 4.123 15 C 0.169 3.831 16 H 0.042 0.958 17 N -0.611 5.611 18 C 0.181 3.819 19 C -0.266 4.266 20 H 0.061 0.939 21 C -0.049 4.049 22 N -0.934 5.934 23 Si 0.966 3.034 24 H -0.288 1.288 25 H -0.289 1.289 26 H -0.272 1.272 27 C 0.114 3.886 28 C -0.122 4.122 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.134 0.866 39 H 0.085 0.915 40 H 0.123 0.877 41 H 0.104 0.896 42 H 0.062 0.938 43 H 0.040 0.960 44 H 0.058 0.942 45 H 0.008 0.992 46 H 0.013 0.987 47 H 0.030 0.970 48 H 0.249 0.751 49 H 0.064 0.936 50 H 0.051 0.949 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.556 4.162 -15.183 27.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 C -0.093 4.093 4 C -0.148 4.148 5 C -0.143 4.143 6 C -0.144 4.144 7 C -0.076 4.076 8 C -0.130 4.130 9 C 0.298 3.702 10 O -0.468 6.468 11 N -0.340 5.340 12 C -0.017 4.017 13 C -0.162 4.162 14 C -0.163 4.163 15 C 0.061 3.939 16 H 0.060 0.940 17 N -0.334 5.334 18 C 0.036 3.964 19 C -0.396 4.396 20 H 0.078 0.922 21 C -0.244 4.244 22 N -0.581 5.581 23 Si 0.795 3.205 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.197 1.197 27 C -0.012 4.012 28 C -0.140 4.140 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.155 0.845 35 H 0.158 0.842 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.152 0.848 39 H 0.103 0.897 40 H 0.141 0.859 41 H 0.122 0.878 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.077 0.923 45 H 0.027 0.973 46 H 0.032 0.968 47 H 0.048 0.952 48 H 0.059 0.941 49 H 0.082 0.918 50 H 0.070 0.930 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -22.037 3.829 -15.410 27.162 hybrid contribution 1.476 -0.946 0.621 1.859 sum -20.562 2.883 -14.789 25.491 Atomic orbital electron populations 1.21703 0.93532 1.02395 1.02122 1.20585 0.97120 0.91655 1.03027 1.20131 0.98991 0.97017 0.93145 1.21276 1.00266 0.95245 0.98005 1.21385 0.99129 0.95226 0.98552 1.21224 1.00092 1.00819 0.92260 1.19520 0.98878 0.94654 0.94544 1.20769 0.91882 1.04291 0.96030 1.21304 0.90665 0.78288 0.79989 1.90705 1.60002 1.40935 1.55195 1.48288 1.12317 1.51043 1.22331 1.22116 0.95388 0.94353 0.89866 1.21904 0.95324 1.02413 0.96573 1.21938 0.96252 0.99376 0.98691 1.20691 0.84764 0.96984 0.91476 0.94000 1.44106 1.09336 1.05204 1.74748 1.20492 0.92737 0.86788 0.96395 1.19478 1.13505 0.85614 1.21010 0.92157 1.25699 1.01396 1.00277 0.97035 1.70217 1.28951 1.29114 1.29800 0.85278 0.78675 0.79924 0.76653 1.21454 1.21562 1.19691 1.21839 0.82818 1.00317 0.96178 1.21050 1.00448 0.94385 0.98165 0.92851 0.92305 0.91299 0.90371 0.91562 0.84543 0.84188 0.85182 0.85468 0.84784 0.89690 0.85865 0.87772 0.91935 0.94110 0.92349 0.97333 0.96840 0.95183 0.94150 0.91809 0.93020 0.86253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.89 71.98 0.71 -1.13 16 2 C -0.09 -1.45 6.06 29.85 0.18 -1.27 16 3 C -0.09 -1.97 5.13 -19.87 -0.10 -2.07 16 4 C -0.13 -2.55 9.70 22.27 0.22 -2.34 16 5 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 6 C -0.13 -2.69 9.70 22.27 0.22 -2.48 16 7 C -0.08 -1.71 4.37 -19.86 -0.09 -1.79 16 8 C -0.09 -1.67 4.18 29.10 0.12 -1.55 16 9 C 0.51 14.90 7.69 87.66 0.67 15.58 16 10 O -0.59 -23.75 15.45 -3.05 -0.05 -23.79 16 11 N -0.61 -17.11 2.97 -819.00 -2.43 -19.55 16 12 C 0.10 1.89 6.34 86.36 0.55 2.44 16 13 C -0.12 -2.68 6.08 30.67 0.19 -2.50 16 14 C -0.12 -4.14 5.15 30.62 0.16 -3.98 16 15 C 0.17 7.02 2.74 45.05 0.12 7.14 16 16 H 0.04 1.89 7.86 -2.39 -0.02 1.87 16 17 N -0.61 -31.59 2.82 -702.42 -1.98 -33.57 16 18 C 0.18 9.09 8.03 127.77 1.03 10.11 16 19 C -0.27 -15.31 9.60 84.03 0.81 -14.50 16 20 H 0.06 3.48 7.81 -2.91 -0.02 3.46 16 21 C -0.05 -2.82 5.10 84.86 0.43 -2.38 16 22 N -0.93 -56.08 10.64 21.65 0.23 -55.85 16 23 Si 0.97 46.76 29.57 68.60 2.03 48.79 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 25 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 26 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 27 C 0.11 4.26 5.78 86.35 0.50 4.76 16 28 C -0.12 -2.84 9.36 22.27 0.21 -2.63 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 33 H 0.07 1.17 8.09 -2.39 -0.02 1.15 16 34 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 35 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 36 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 37 H 0.13 1.68 7.64 -2.39 -0.02 1.67 16 38 H 0.13 1.57 7.88 -2.39 -0.02 1.55 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.12 1.24 5.93 -2.39 -0.01 1.22 16 41 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.06 1.94 7.72 -2.39 -0.02 1.92 16 45 H 0.01 0.46 7.41 -2.39 -0.02 0.44 16 46 H 0.01 0.72 7.21 -2.39 -0.02 0.70 16 47 H 0.03 1.28 6.35 -2.39 -0.02 1.27 16 48 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 49 H 0.06 2.35 6.49 -2.38 -0.02 2.33 16 50 H 0.05 2.32 7.01 -2.39 -0.02 2.30 16 51 H 0.12 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -76.16 400.77 4.83 -71.32 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.89 Total: 13.48 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 6.14 Total: -0.83 kcal Atomic # 7 Polarization: -104.79 SS G_CDS: -4.18 Total: -108.97 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.05 Total: -23.79 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -76.16 4.83 -71.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027468628.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.790 kcal (2) G-P(sol) polarization free energy of solvation -76.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds