Wall clock time and date at job start Tue Mar 31 2020 16:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50705 * 109.47122 * 2 1 4 4 C 1.38229 * 119.99887 * 89.99668 * 3 2 1 5 5 C 1.38242 * 120.00070 * 180.02562 * 4 3 2 6 6 C 1.38231 * 119.99553 * 0.02562 * 5 4 3 7 7 C 1.50700 * 120.00005 * 179.97438 * 6 5 4 8 8 C 1.50707 * 109.46856 * 90.00348 * 7 6 5 9 9 O 1.21280 * 120.00190 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99909 * 180.02562 * 8 7 6 11 11 C 1.46932 * 120.63216 * 359.71623 * 10 8 7 12 12 C 1.53621 * 108.54455 * 126.36877 * 11 10 8 13 13 C 1.53039 * 109.23916 * 54.85753 * 12 11 10 14 14 C 1.53044 * 109.54054 * 298.51087 * 13 12 11 15 15 H 1.09001 * 109.49647 * 301.41372 * 14 13 12 16 16 N 1.46498 * 109.49547 * 181.31861 * 14 13 12 17 17 C 1.46503 * 120.00286 * 300.15634 * 16 14 13 18 18 C 1.36944 * 119.99816 * 120.16645 * 16 14 13 19 19 H 1.07996 * 119.99914 * 21.99463 * 18 16 14 20 20 C 1.38807 * 119.99580 * 201.99606 * 18 16 14 21 21 N 1.31624 * 120.00684 * 12.68080 * 20 18 16 22 22 Si 1.86808 * 120.00056 * 192.68118 * 20 18 16 23 23 H 1.48500 * 109.46981 * 59.99978 * 22 20 18 24 24 H 1.48499 * 109.47430 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46863 * 300.00285 * 22 20 18 26 26 C 1.46922 * 120.63266 * 179.97438 * 10 8 7 27 27 C 1.38238 * 120.00304 * 0.25261 * 6 5 4 28 28 C 1.38231 * 119.99735 * 270.01905 * 3 2 1 29 29 H 1.08997 * 109.46725 * 59.99940 * 1 2 3 30 30 H 1.08998 * 109.46973 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47005 * 300.00589 * 1 2 3 32 32 H 1.09000 * 109.47342 * 239.99832 * 2 1 3 33 33 H 1.09003 * 109.47047 * 119.99441 * 2 1 3 34 34 H 1.08001 * 120.00191 * 0.02562 * 4 3 2 35 35 H 1.07995 * 120.00310 * 179.97438 * 5 4 3 36 36 H 1.09002 * 109.47524 * 210.00283 * 7 6 5 37 37 H 1.09003 * 109.47279 * 330.00495 * 7 6 5 38 38 H 1.08999 * 109.58783 * 246.20915 * 11 10 8 39 39 H 1.09003 * 109.58654 * 6.63175 * 11 10 8 40 40 H 1.09006 * 109.63532 * 294.86872 * 12 11 10 41 41 H 1.09000 * 109.45700 * 174.74188 * 12 11 10 42 42 H 1.09004 * 109.45862 * 178.49316 * 13 12 11 43 43 H 1.08998 * 109.45171 * 58.52771 * 13 12 11 44 44 H 1.09000 * 109.46765 * 94.33115 * 17 16 14 45 45 H 1.08994 * 109.47336 * 214.33187 * 17 16 14 46 46 H 1.08996 * 109.46923 * 334.33616 * 17 16 14 47 47 H 0.96996 * 120.00244 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.58280 * 353.37501 * 26 10 8 49 49 H 1.08999 * 109.58768 * 113.79280 * 26 10 8 50 50 H 1.08002 * 120.00096 * 179.72571 * 27 6 5 51 51 H 1.08001 * 120.00089 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7230 3.3760 1.1972 6 6 2.9524 4.0279 0.0000 7 6 3.4536 5.4491 -0.0001 8 6 4.9607 5.4502 -0.0007 9 8 5.5679 4.4004 -0.0006 10 7 5.6337 6.6179 -0.0004 11 6 4.9122 7.8979 -0.0056 12 6 5.4201 8.7498 1.1675 13 6 6.9413 8.8859 1.0704 14 6 7.5863 7.5013 1.1664 15 1 7.3030 7.0326 2.1089 16 7 9.0438 7.6355 1.1050 17 6 9.6748 8.2418 -0.0699 18 6 9.8165 7.1941 2.1459 19 1 9.4301 6.4515 2.8282 20 6 11.0963 7.7012 2.3239 21 7 11.4784 8.7717 1.6602 22 14 12.2766 6.8644 3.5057 23 1 12.5034 5.4632 3.0694 24 1 13.5689 7.5957 3.5153 25 1 11.6953 6.8694 4.8722 26 6 7.1028 6.6352 -0.0004 27 6 2.7166 3.3782 -1.1972 28 6 2.2624 2.0726 -1.1972 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 2.0830 1.5633 2.1324 35 1 2.9025 3.8853 2.1324 36 1 3.0896 5.9628 -0.8898 37 1 3.0903 5.9626 0.8902 38 1 5.0972 8.4178 -0.9456 39 1 3.8437 7.7155 0.1092 40 1 5.1572 8.2693 2.1099 41 1 4.9628 9.7383 1.1230 42 1 7.3027 9.5121 1.8862 43 1 7.2047 9.3438 0.1170 44 1 9.8347 9.3047 0.1114 45 1 10.6327 7.7573 -0.2586 46 1 9.0263 8.1147 -0.9367 47 1 12.3726 9.1262 1.7849 48 1 7.4802 5.6194 0.1177 49 1 7.4633 7.0541 -0.9400 50 1 2.8916 3.8891 -2.1325 51 1 2.0817 1.5637 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027595396.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:50 Heat of formation + Delta-G solvation = 0.864944 kcal Electronic energy + Delta-G solvation = -28285.373487 eV Core-core repulsion = 24570.672316 eV Total energy + Delta-G solvation = -3714.701170 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.25748 -39.25156 -37.38024 -35.06533 -34.76132 -32.39364 -31.49993 -31.15420 -30.98164 -28.90701 -27.32490 -25.99294 -24.92298 -23.72052 -23.05174 -22.81404 -21.62953 -20.80274 -19.50853 -18.54087 -17.06468 -16.69172 -16.38233 -15.97384 -15.56387 -15.22595 -14.90171 -14.69021 -14.07995 -13.98550 -13.90935 -13.84912 -13.65651 -13.41546 -13.30359 -12.92344 -12.76107 -12.65688 -12.39473 -12.11248 -12.01064 -11.94168 -11.79819 -11.39046 -11.07075 -10.99896 -10.93793 -10.88575 -10.83615 -10.62246 -10.40619 -10.29552 -10.12364 -9.86326 -9.77906 -9.55454 -8.94460 -8.60194 -8.55366 -8.29981 -6.74487 -5.70509 -3.16136 1.24702 1.38108 2.83504 3.19515 3.41490 3.46261 3.48703 3.72926 4.50021 4.52201 4.63583 4.68028 4.75677 4.86810 4.93078 4.98107 5.10831 5.14255 5.20208 5.29503 5.30995 5.33943 5.43310 5.46024 5.51481 5.54752 5.60095 5.63350 5.72413 5.78117 5.87094 5.88525 5.99512 6.01412 6.02330 6.17234 6.24605 6.34405 6.39810 6.53245 6.53354 6.54642 6.67794 6.81165 6.94537 6.96685 7.01764 7.40447 7.66857 7.73684 7.83298 8.38888 8.44264 9.25457 9.88171 10.36195 11.34311 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016774 B = 0.002485 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.893583 B =11267.137497 C =12285.255968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.117 4.117 5 C -0.101 4.101 6 C -0.066 4.066 7 C -0.102 4.102 8 C 0.512 3.488 9 O -0.534 6.534 10 N -0.608 5.608 11 C 0.107 3.893 12 C -0.132 4.132 13 C -0.132 4.132 14 C 0.170 3.830 15 H 0.064 0.936 16 N -0.593 5.593 17 C 0.163 3.837 18 C -0.254 4.254 19 H 0.068 0.932 20 C 0.002 3.998 21 N -0.909 5.909 22 Si 0.905 3.095 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.097 3.903 27 C -0.103 4.103 28 C -0.118 4.118 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.029 0.971 45 H 0.043 0.957 46 H -0.003 1.003 47 H 0.252 0.748 48 H 0.089 0.911 49 H 0.062 0.938 50 H 0.119 0.881 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.634 -7.491 -5.453 25.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.086 4.086 4 C -0.135 4.135 5 C -0.119 4.119 6 C -0.066 4.066 7 C -0.141 4.141 8 C 0.299 3.701 9 O -0.410 6.410 10 N -0.342 5.342 11 C -0.016 4.016 12 C -0.171 4.171 13 C -0.172 4.172 14 C 0.060 3.940 15 H 0.082 0.918 16 N -0.315 5.315 17 C 0.018 3.982 18 C -0.383 4.383 19 H 0.085 0.915 20 C -0.196 4.196 21 N -0.554 5.554 22 Si 0.735 3.265 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.210 1.210 26 C -0.026 4.026 27 C -0.121 4.121 28 C -0.136 4.136 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.048 0.952 45 H 0.062 0.938 46 H 0.016 0.984 47 H 0.063 0.937 48 H 0.107 0.893 49 H 0.080 0.920 50 H 0.137 0.863 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -23.084 -7.964 -5.453 25.021 hybrid contribution 0.851 -0.093 0.622 1.059 sum -22.233 -8.057 -4.830 24.136 Atomic orbital electron populations 1.21744 0.94845 1.01537 1.02161 1.20537 0.96026 0.92864 1.02819 1.19852 0.99453 0.96068 0.93277 1.20945 1.00332 0.94755 0.97444 1.20965 0.98628 0.94906 0.97429 1.19293 0.98877 0.94852 0.93575 1.20719 0.93247 0.95353 1.04826 1.20440 0.89379 0.83584 0.76707 1.90724 1.70001 1.30915 1.49397 1.48220 1.07749 1.05364 1.72843 1.21851 0.95881 0.84547 0.99323 1.22009 0.97888 0.99230 0.97979 1.22121 0.92643 1.00228 1.02208 1.20566 0.85086 0.92518 0.95798 0.91807 1.43888 0.98809 1.70971 1.17807 1.20783 0.94672 0.97698 0.85007 1.19188 0.96173 1.16780 1.06165 0.91470 1.24987 0.99009 0.96443 0.99191 1.70062 1.18931 1.21623 1.44757 0.86323 0.80400 0.78965 0.80789 1.21042 1.21651 1.20975 1.22389 0.76849 1.02989 1.00398 1.20939 0.98924 0.94894 0.97320 1.20927 1.00496 0.94724 0.97405 0.92616 0.92536 0.92581 0.91131 0.91101 0.86275 0.86229 0.88263 0.88114 0.91443 0.90336 0.91776 0.91336 0.91498 0.92474 0.95233 0.93796 0.98407 0.93742 0.89301 0.91988 0.86346 0.86330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.90 37.16 0.37 -0.61 16 2 C -0.09 -0.68 6.06 -27.88 -0.17 -0.85 16 3 C -0.09 -0.91 5.13 -104.62 -0.54 -1.44 16 4 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 5 C -0.10 -1.20 9.70 -39.58 -0.38 -1.59 16 6 C -0.07 -0.79 4.37 -104.62 -0.46 -1.25 16 7 C -0.10 -1.10 4.18 -29.03 -0.12 -1.22 16 8 C 0.51 7.88 7.69 -10.98 -0.08 7.79 16 9 O -0.53 -10.63 15.45 5.56 0.09 -10.55 16 10 N -0.61 -9.14 2.97 -172.53 -0.51 -9.65 16 11 C 0.11 1.21 6.37 -3.48 -0.02 1.18 16 12 C -0.13 -1.66 6.10 -26.39 -0.16 -1.82 16 13 C -0.13 -2.28 5.14 -26.69 -0.14 -2.42 16 14 C 0.17 3.47 2.74 -67.83 -0.19 3.29 16 15 H 0.06 1.39 7.86 -51.93 -0.41 0.98 16 16 N -0.59 -14.86 2.82 -173.37 -0.49 -15.35 16 17 C 0.16 3.99 8.03 59.85 0.48 4.47 16 18 C -0.25 -7.06 9.60 -15.06 -0.14 -7.21 16 19 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 20 C 0.00 0.05 5.10 -17.43 -0.09 -0.04 16 21 N -0.91 -26.53 10.64 55.49 0.59 -25.94 16 22 Si 0.91 22.27 29.57 -169.99 -5.03 17.24 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 C 0.10 1.82 5.78 -3.74 -0.02 1.79 16 27 C -0.10 -1.18 9.70 -39.58 -0.38 -1.57 16 28 C -0.12 -1.26 9.70 -39.58 -0.38 -1.64 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 33 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.10 0.83 7.88 -51.93 -0.41 0.42 16 37 H 0.10 0.88 7.65 -51.93 -0.40 0.48 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.64 5.93 -51.93 -0.31 0.33 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.06 0.99 7.71 -51.93 -0.40 0.59 16 44 H 0.03 0.77 7.41 -51.93 -0.38 0.39 16 45 H 0.04 1.17 7.21 -51.93 -0.37 0.80 16 46 H 0.00 -0.05 6.36 -51.93 -0.33 -0.38 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 48 H 0.09 1.91 7.01 -51.93 -0.36 1.55 16 49 H 0.06 1.15 6.50 -51.93 -0.34 0.82 16 50 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 51 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 400.79 15.07 6.04 6.04 Total: -1.00 -32.91 400.79 -10.88 -43.79 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -8.75 Total: -0.80 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -2.82 Total: -4.79 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: -0.41 Total: -50.94 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.24 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.91 -10.88 -43.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027595396.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.653 kcal (2) G-P(sol) polarization free energy of solvation -32.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds