Wall clock time and date at job start Tue Mar 31 2020 16:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50705 * 109.47122 * 2 1 4 4 C 1.38229 * 119.99887 * 89.99668 * 3 2 1 5 5 C 1.38242 * 120.00070 * 180.02562 * 4 3 2 6 6 C 1.38231 * 119.99553 * 0.02562 * 5 4 3 7 7 C 1.50700 * 120.00005 * 179.97438 * 6 5 4 8 8 C 1.50707 * 109.46856 * 90.00348 * 7 6 5 9 9 O 1.21280 * 120.00190 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99909 * 180.02562 * 8 7 6 11 11 C 1.46932 * 120.63216 * 359.71623 * 10 8 7 12 12 C 1.53621 * 108.54455 * 126.36877 * 11 10 8 13 13 C 1.53039 * 109.23916 * 54.85753 * 12 11 10 14 14 C 1.53044 * 109.54054 * 298.51087 * 13 12 11 15 15 H 1.09001 * 109.49647 * 301.41372 * 14 13 12 16 16 N 1.46498 * 109.49547 * 181.31861 * 14 13 12 17 17 C 1.46503 * 120.00286 * 300.15634 * 16 14 13 18 18 C 1.36944 * 119.99816 * 120.16645 * 16 14 13 19 19 H 1.07996 * 119.99914 * 21.99463 * 18 16 14 20 20 C 1.38807 * 119.99580 * 201.99606 * 18 16 14 21 21 N 1.31624 * 120.00684 * 12.68080 * 20 18 16 22 22 Si 1.86808 * 120.00056 * 192.68118 * 20 18 16 23 23 H 1.48500 * 109.46981 * 59.99978 * 22 20 18 24 24 H 1.48499 * 109.47430 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46863 * 300.00285 * 22 20 18 26 26 C 1.46922 * 120.63266 * 179.97438 * 10 8 7 27 27 C 1.38238 * 120.00304 * 0.25261 * 6 5 4 28 28 C 1.38231 * 119.99735 * 270.01905 * 3 2 1 29 29 H 1.08997 * 109.46725 * 59.99940 * 1 2 3 30 30 H 1.08998 * 109.46973 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47005 * 300.00589 * 1 2 3 32 32 H 1.09000 * 109.47342 * 239.99832 * 2 1 3 33 33 H 1.09003 * 109.47047 * 119.99441 * 2 1 3 34 34 H 1.08001 * 120.00191 * 0.02562 * 4 3 2 35 35 H 1.07995 * 120.00310 * 179.97438 * 5 4 3 36 36 H 1.09002 * 109.47524 * 210.00283 * 7 6 5 37 37 H 1.09003 * 109.47279 * 330.00495 * 7 6 5 38 38 H 1.08999 * 109.58783 * 246.20915 * 11 10 8 39 39 H 1.09003 * 109.58654 * 6.63175 * 11 10 8 40 40 H 1.09006 * 109.63532 * 294.86872 * 12 11 10 41 41 H 1.09000 * 109.45700 * 174.74188 * 12 11 10 42 42 H 1.09004 * 109.45862 * 178.49316 * 13 12 11 43 43 H 1.08998 * 109.45171 * 58.52771 * 13 12 11 44 44 H 1.09000 * 109.46765 * 94.33115 * 17 16 14 45 45 H 1.08994 * 109.47336 * 214.33187 * 17 16 14 46 46 H 1.08996 * 109.46923 * 334.33616 * 17 16 14 47 47 H 0.96996 * 120.00244 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.58280 * 353.37501 * 26 10 8 49 49 H 1.08999 * 109.58768 * 113.79280 * 26 10 8 50 50 H 1.08002 * 120.00096 * 179.72571 * 27 6 5 51 51 H 1.08001 * 120.00089 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7230 3.3760 1.1972 6 6 2.9524 4.0279 0.0000 7 6 3.4536 5.4491 -0.0001 8 6 4.9607 5.4502 -0.0007 9 8 5.5679 4.4004 -0.0006 10 7 5.6337 6.6179 -0.0004 11 6 4.9122 7.8979 -0.0056 12 6 5.4201 8.7498 1.1675 13 6 6.9413 8.8859 1.0704 14 6 7.5863 7.5013 1.1664 15 1 7.3030 7.0326 2.1089 16 7 9.0438 7.6355 1.1050 17 6 9.6748 8.2418 -0.0699 18 6 9.8165 7.1941 2.1459 19 1 9.4301 6.4515 2.8282 20 6 11.0963 7.7012 2.3239 21 7 11.4784 8.7717 1.6602 22 14 12.2766 6.8644 3.5057 23 1 12.5034 5.4632 3.0694 24 1 13.5689 7.5957 3.5153 25 1 11.6953 6.8694 4.8722 26 6 7.1028 6.6352 -0.0004 27 6 2.7166 3.3782 -1.1972 28 6 2.2624 2.0726 -1.1972 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 2.0830 1.5633 2.1324 35 1 2.9025 3.8853 2.1324 36 1 3.0896 5.9628 -0.8898 37 1 3.0903 5.9626 0.8902 38 1 5.0972 8.4178 -0.9456 39 1 3.8437 7.7155 0.1092 40 1 5.1572 8.2693 2.1099 41 1 4.9628 9.7383 1.1230 42 1 7.3027 9.5121 1.8862 43 1 7.2047 9.3438 0.1170 44 1 9.8347 9.3047 0.1114 45 1 10.6327 7.7573 -0.2586 46 1 9.0263 8.1147 -0.9367 47 1 12.3726 9.1262 1.7849 48 1 7.4802 5.6194 0.1177 49 1 7.4633 7.0541 -0.9400 50 1 2.8916 3.8891 -2.1325 51 1 2.0817 1.5637 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027595396.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:49 Heat of formation + Delta-G solvation = -16.361092 kcal Electronic energy + Delta-G solvation = -28286.120464 eV Core-core repulsion = 24570.672316 eV Total energy + Delta-G solvation = -3715.448147 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.38307 -40.19566 -38.81416 -36.75245 -35.52288 -33.99386 -32.83328 -32.26054 -31.78387 -30.44828 -28.27714 -28.05388 -26.09483 -25.28052 -23.97098 -23.62342 -23.02439 -21.69001 -20.90297 -19.82153 -18.79351 -18.17756 -17.30501 -17.07849 -16.80400 -16.47352 -16.02921 -15.89053 -15.68260 -15.31640 -15.16744 -14.69111 -14.59830 -14.55012 -14.44707 -14.22943 -13.92471 -13.83597 -13.65215 -13.59299 -12.97860 -12.92342 -12.85739 -12.76498 -12.56029 -12.48006 -12.30409 -12.14664 -12.04936 -11.94175 -11.78552 -11.72305 -11.64020 -11.62226 -11.38456 -10.84697 -10.66731 -9.77074 -9.67238 -9.38791 -8.77574 -7.85690 -5.33378 0.41860 0.55426 1.42209 1.45184 1.51705 1.67443 2.03943 2.48767 2.87887 3.26795 3.61019 3.66767 3.79097 3.90355 3.97165 4.01552 4.11498 4.15340 4.19131 4.21878 4.27556 4.37814 4.48644 4.51143 4.57683 4.61592 4.64752 4.73681 4.75214 4.78854 4.79301 4.89239 4.92088 5.04373 5.06662 5.09487 5.15557 5.20429 5.25049 5.27597 5.39316 5.44477 5.50010 5.52048 5.56213 5.62323 5.70550 5.70752 5.75684 6.16155 6.29967 6.51808 7.12182 7.23989 7.84241 8.26284 9.16667 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016774 B = 0.002485 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.893583 B =11267.137497 C =12285.255968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.131 4.131 5 C -0.119 4.119 6 C -0.085 4.085 7 C -0.090 4.090 8 C 0.507 3.493 9 O -0.589 6.589 10 N -0.607 5.607 11 C 0.104 3.896 12 C -0.123 4.123 13 C -0.123 4.123 14 C 0.168 3.832 15 H 0.042 0.958 16 N -0.611 5.611 17 C 0.181 3.819 18 C -0.266 4.266 19 H 0.060 0.940 20 C -0.050 4.050 21 N -0.934 5.934 22 Si 0.967 3.033 23 H -0.283 1.283 24 H -0.289 1.289 25 H -0.276 1.276 26 C 0.114 3.886 27 C -0.116 4.116 28 C -0.129 4.129 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.132 0.868 35 H 0.125 0.875 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.085 0.915 39 H 0.124 0.876 40 H 0.062 0.938 41 H 0.103 0.897 42 H 0.040 0.960 43 H 0.058 0.942 44 H 0.008 0.992 45 H 0.012 0.988 46 H 0.030 0.970 47 H 0.249 0.751 48 H 0.051 0.949 49 H 0.064 0.936 50 H 0.131 0.869 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.552 -7.314 -5.932 28.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 C -0.093 4.093 4 C -0.149 4.149 5 C -0.137 4.137 6 C -0.085 4.085 7 C -0.129 4.129 8 C 0.297 3.703 9 O -0.469 6.469 10 N -0.340 5.340 11 C -0.017 4.017 12 C -0.162 4.162 13 C -0.163 4.163 14 C 0.060 3.940 15 H 0.061 0.939 16 N -0.334 5.334 17 C 0.037 3.963 18 C -0.396 4.396 19 H 0.078 0.922 20 C -0.245 4.245 21 N -0.581 5.581 22 Si 0.795 3.205 23 H -0.210 1.210 24 H -0.215 1.215 25 H -0.201 1.201 26 C -0.011 4.011 27 C -0.134 4.134 28 C -0.147 4.147 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.150 0.850 35 H 0.143 0.857 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.103 0.897 39 H 0.142 0.858 40 H 0.081 0.919 41 H 0.122 0.878 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.027 0.973 45 H 0.031 0.969 46 H 0.048 0.952 47 H 0.059 0.941 48 H 0.070 0.930 49 H 0.082 0.918 50 H 0.149 0.851 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -26.067 -7.766 -5.932 27.839 hybrid contribution 1.710 -0.212 0.763 1.884 sum -24.358 -7.977 -5.169 26.147 Atomic orbital electron populations 1.21712 0.93739 1.02401 1.02024 1.20588 0.96927 0.91453 1.03272 1.20185 0.98844 0.97173 0.93095 1.21214 1.00423 0.94837 0.98384 1.21207 0.99074 0.95527 0.97877 1.19516 0.99445 0.95781 0.93763 1.20762 0.88983 0.95455 1.07686 1.21332 0.91310 0.82572 0.75070 1.90703 1.71487 1.32924 1.51762 1.48299 1.06052 1.07211 1.72465 1.22207 0.97774 0.82307 0.99432 1.21974 0.93868 1.01605 0.98730 1.21940 0.96225 0.96941 1.01165 1.20702 0.82922 0.94759 0.95608 0.93945 1.44099 1.00808 1.71097 1.17380 1.20483 0.93978 0.95837 0.86048 1.19425 0.97028 1.16585 1.06579 0.92186 1.25706 1.00422 0.97206 1.01150 1.70207 1.18945 1.22739 1.46163 0.85358 0.78290 0.77767 0.79126 1.20976 1.21493 1.20139 1.21840 0.79864 1.00135 0.99279 1.21219 0.98929 0.95413 0.97806 1.21232 1.00318 0.94825 0.98315 0.92645 0.91177 0.92816 0.90556 0.90791 0.85019 0.85727 0.84865 0.85384 0.89701 0.85829 0.91887 0.87846 0.94115 0.92364 0.97346 0.96869 0.95209 0.94144 0.93042 0.91824 0.85139 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.90 71.98 0.71 -0.94 16 2 C -0.09 -1.24 6.06 29.85 0.18 -1.06 16 3 C -0.09 -1.85 5.13 -19.87 -0.10 -1.95 16 4 C -0.13 -2.77 9.70 22.27 0.22 -2.55 16 5 C -0.12 -2.71 9.70 22.27 0.22 -2.49 16 6 C -0.08 -1.90 4.37 -19.87 -0.09 -1.98 16 7 C -0.09 -1.64 4.18 29.10 0.12 -1.52 16 8 C 0.51 14.85 7.69 87.66 0.67 15.52 16 9 O -0.59 -23.73 15.45 -3.03 -0.05 -23.78 16 10 N -0.61 -17.10 2.97 -818.14 -2.43 -19.53 16 11 C 0.10 1.88 6.37 86.51 0.55 2.43 16 12 C -0.12 -2.68 6.10 30.82 0.19 -2.49 16 13 C -0.12 -4.14 5.14 30.62 0.16 -3.99 16 14 C 0.17 6.99 2.74 45.06 0.12 7.11 16 15 H 0.04 1.91 7.86 -2.39 -0.02 1.90 16 16 N -0.61 -31.60 2.82 -702.44 -1.98 -33.58 16 17 C 0.18 9.12 8.03 127.77 1.03 10.14 16 18 C -0.27 -15.31 9.60 84.03 0.81 -14.51 16 19 H 0.06 3.45 7.81 -2.91 -0.02 3.43 16 20 C -0.05 -2.86 5.10 84.86 0.43 -2.43 16 21 N -0.93 -56.08 10.64 21.65 0.23 -55.85 16 22 Si 0.97 46.78 29.57 68.60 2.03 48.80 16 23 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 25 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 26 C 0.11 4.27 5.78 86.35 0.50 4.77 16 27 C -0.12 -2.49 9.70 22.27 0.22 -2.27 16 28 C -0.13 -2.60 9.70 22.27 0.22 -2.39 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 33 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 34 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 35 H 0.12 2.56 8.06 -2.91 -0.02 2.53 16 36 H 0.13 1.54 7.88 -2.39 -0.02 1.52 16 37 H 0.13 1.66 7.65 -2.39 -0.02 1.64 16 38 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.12 1.23 5.93 -2.39 -0.01 1.21 16 40 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.06 1.94 7.71 -2.39 -0.02 1.92 16 44 H 0.01 0.45 7.41 -2.39 -0.02 0.43 16 45 H 0.01 0.70 7.21 -2.39 -0.02 0.69 16 46 H 0.03 1.27 6.36 -2.39 -0.02 1.26 16 47 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 48 H 0.05 2.31 7.01 -2.38 -0.02 2.30 16 49 H 0.06 2.34 6.50 -2.39 -0.02 2.33 16 50 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 51 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -76.12 400.79 4.84 -71.27 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.89 Total: 13.23 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 6.15 Total: -0.58 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -4.18 Total: -108.95 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.05 Total: -23.78 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.80 kcal Total: -76.12 4.84 -71.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027595396.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.911 kcal (2) G-P(sol) polarization free energy of solvation -76.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds