Wall clock time and date at job start Tue Mar 31 2020 16:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.46860 * 2 1 4 4 C 1.38238 * 119.99897 * 90.00370 * 3 2 1 5 5 C 1.38232 * 120.00018 * 179.97438 * 4 3 2 6 6 C 1.38234 * 119.99781 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.99806 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47091 * 89.99847 * 7 6 5 9 9 O 1.21276 * 120.00424 * 0.02562 * 8 7 6 10 10 N 1.34784 * 120.00169 * 180.27533 * 8 7 6 11 11 C 1.46930 * 120.62773 * 359.44712 * 10 8 7 12 12 C 1.52765 * 109.00746 * 233.58455 * 11 10 8 13 13 C 1.53039 * 109.38385 * 305.58801 * 12 11 10 14 14 C 1.53047 * 109.53723 * 61.24040 * 13 12 11 15 15 H 1.09002 * 109.49577 * 58.58441 * 14 13 12 16 16 N 1.46494 * 109.49619 * 178.68623 * 14 13 12 17 17 C 1.46500 * 120.00427 * 59.83538 * 16 14 13 18 18 C 1.36942 * 119.99907 * 239.83882 * 16 14 13 19 19 H 1.08002 * 119.99799 * 22.06580 * 18 16 14 20 20 C 1.38819 * 119.99766 * 202.07032 * 18 16 14 21 21 N 1.31614 * 120.00250 * 12.40251 * 20 18 16 22 22 Si 1.86797 * 119.99550 * 192.40204 * 20 18 16 23 23 H 1.48497 * 109.47456 * 89.99644 * 22 20 18 24 24 H 1.48499 * 109.46888 * 210.00035 * 22 20 18 25 25 H 1.48505 * 109.47435 * 329.99638 * 22 20 18 26 26 C 1.46923 * 120.63158 * 179.72917 * 10 8 7 27 27 C 1.38237 * 120.00170 * 0.25474 * 6 5 4 28 28 C 1.38229 * 119.99638 * 359.46902 * 27 6 5 29 29 H 1.08995 * 109.47634 * 60.00087 * 1 2 3 30 30 H 1.09004 * 109.46603 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46691 * 299.99227 * 1 2 3 32 32 H 1.09001 * 109.47179 * 240.00186 * 2 1 3 33 33 H 1.08995 * 109.47634 * 119.99913 * 2 1 3 34 34 H 1.07999 * 119.99877 * 359.97438 * 4 3 2 35 35 H 1.07998 * 120.00210 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.47319 * 329.99835 * 7 6 5 37 37 H 1.08998 * 109.47446 * 209.99816 * 7 6 5 38 38 H 1.09002 * 109.58617 * 353.41727 * 11 10 8 39 39 H 1.08993 * 109.58666 * 113.84214 * 11 10 8 40 40 H 1.09002 * 109.56510 * 185.54877 * 12 11 10 41 41 H 1.09002 * 109.38469 * 65.51538 * 12 11 10 42 42 H 1.09003 * 109.45623 * 301.22324 * 13 12 11 43 43 H 1.08997 * 109.46038 * 181.26221 * 13 12 11 44 44 H 1.09007 * 109.46948 * 94.30233 * 17 16 14 45 45 H 1.08998 * 109.47870 * 214.30830 * 17 16 14 46 46 H 1.08998 * 109.47034 * 334.31070 * 17 16 14 47 47 H 0.96993 * 120.00244 * 180.02562 * 21 20 18 48 48 H 1.09008 * 109.58391 * 246.15614 * 26 10 8 49 49 H 1.08998 * 109.59048 * 6.43204 * 26 10 8 50 50 H 1.08001 * 119.99997 * 179.73207 * 27 6 5 51 51 H 1.08007 * 119.99687 * 180.27719 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7239 3.3756 1.1972 6 6 2.9552 4.0269 0.0001 7 6 3.4575 5.4478 0.0001 8 6 4.9644 5.4478 0.0013 9 8 5.5709 4.3976 0.0016 10 7 5.6383 6.6151 0.0072 11 6 4.9177 7.8955 0.0002 12 6 5.4315 8.7493 -1.1577 13 6 6.9524 8.8841 -1.0535 14 6 7.5968 7.4992 -1.1492 15 1 7.3174 7.0325 -2.0938 16 7 9.0541 7.6323 -1.0809 17 6 9.6801 8.2360 0.0980 18 6 9.8312 7.1923 -2.1191 19 1 9.4041 7.0839 -3.1051 20 6 11.1679 6.8856 -1.9040 21 7 11.6295 6.7800 -0.6760 22 14 12.3113 6.6228 -3.3576 23 1 12.9274 7.9177 -3.7433 24 1 13.3773 5.6600 -2.9810 25 1 11.5381 6.0816 -4.5042 26 6 7.1075 6.6313 0.0144 27 6 2.7203 3.3769 -1.1971 28 6 2.2645 2.0719 -1.1971 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.0824 1.5635 2.1325 35 1 2.9036 3.8849 2.1325 36 1 3.0934 5.9619 0.8896 37 1 3.0949 5.9614 -0.8903 38 1 3.8506 7.7135 -0.1273 39 1 5.0916 8.4178 0.9409 40 1 4.9747 9.7379 -1.1130 41 1 5.1725 8.2712 -2.1025 42 1 7.2119 9.3402 -0.0981 43 1 7.3178 9.5117 -1.8664 44 1 9.9686 7.4517 0.7979 45 1 10.5650 8.7949 -0.2065 46 1 8.9724 8.9105 0.5799 47 1 12.5636 6.5661 -0.5258 48 1 7.4636 7.0484 0.9564 49 1 7.4847 5.6152 -0.1010 50 1 2.8969 3.8872 -2.1324 51 1 2.0852 1.5625 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027595397.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:53 Heat of formation + Delta-G solvation = 0.680818 kcal Electronic energy + Delta-G solvation = -28340.541026 eV Core-core repulsion = 24625.831871 eV Total energy + Delta-G solvation = -3714.709155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.21648 -39.22157 -37.37445 -35.06343 -34.72839 -32.40664 -31.47928 -31.13811 -30.94976 -28.90897 -27.30099 -25.99215 -24.91668 -23.70202 -23.01025 -22.78104 -21.66147 -20.76896 -19.48578 -18.51672 -17.02784 -16.69259 -16.35252 -15.93928 -15.49983 -15.16999 -14.87609 -14.71834 -14.13964 -13.98690 -13.87925 -13.80581 -13.60748 -13.38773 -13.32013 -12.89837 -12.77336 -12.60715 -12.38631 -12.12545 -11.93720 -11.87907 -11.76670 -11.36171 -11.17264 -11.02047 -10.91165 -10.90251 -10.79211 -10.60900 -10.38851 -10.32018 -10.15443 -9.84233 -9.73848 -9.51375 -8.91172 -8.56451 -8.53026 -8.26984 -6.74692 -5.70412 -3.16273 1.28072 1.41471 2.89469 3.24206 3.40852 3.46701 3.48368 3.76446 4.50452 4.54268 4.66615 4.71227 4.79110 4.89711 4.95667 4.98317 5.13424 5.13784 5.22650 5.30734 5.32385 5.35549 5.45646 5.46576 5.54230 5.54621 5.60569 5.65712 5.75308 5.76479 5.90065 5.93257 6.00495 6.04427 6.05329 6.14256 6.24607 6.37477 6.39833 6.52252 6.56518 6.57982 6.70979 6.80153 6.95029 6.98727 7.01593 7.40173 7.72790 7.73837 7.83286 8.40649 8.49033 9.25379 9.87971 10.36224 11.34425 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015112 B = 0.002588 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.431967 B =10817.298422 C =11893.839942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.087 4.087 4 C -0.117 4.117 5 C -0.102 4.102 6 C -0.065 4.065 7 C -0.101 4.101 8 C 0.510 3.490 9 O -0.532 6.532 10 N -0.609 5.609 11 C 0.108 3.892 12 C -0.132 4.132 13 C -0.133 4.133 14 C 0.169 3.831 15 H 0.063 0.937 16 N -0.592 5.592 17 C 0.162 3.838 18 C -0.254 4.254 19 H 0.068 0.932 20 C 0.002 3.998 21 N -0.907 5.907 22 Si 0.906 3.094 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.099 3.901 27 C -0.102 4.102 28 C -0.117 4.117 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.028 0.972 45 H 0.044 0.956 46 H -0.001 1.001 47 H 0.253 0.747 48 H 0.059 0.941 49 H 0.090 0.910 50 H 0.119 0.881 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.898 -3.106 3.235 24.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.087 4.087 4 C -0.135 4.135 5 C -0.121 4.121 6 C -0.066 4.066 7 C -0.141 4.141 8 C 0.297 3.703 9 O -0.408 6.408 10 N -0.343 5.343 11 C -0.016 4.016 12 C -0.171 4.171 13 C -0.173 4.173 14 C 0.060 3.940 15 H 0.082 0.918 16 N -0.314 5.314 17 C 0.018 3.982 18 C -0.384 4.384 19 H 0.086 0.914 20 C -0.196 4.196 21 N -0.552 5.552 22 Si 0.736 3.264 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.205 1.205 26 C -0.025 4.025 27 C -0.120 4.120 28 C -0.135 4.135 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.046 0.954 45 H 0.063 0.937 46 H 0.017 0.983 47 H 0.063 0.937 48 H 0.078 0.922 49 H 0.109 0.891 50 H 0.138 0.862 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -23.343 -3.715 3.298 23.866 hybrid contribution 0.859 -0.003 -0.655 1.081 sum -22.484 -3.717 2.642 22.941 Atomic orbital electron populations 1.21743 0.94864 1.01520 1.02145 1.20534 0.96008 0.92874 1.02828 1.19849 0.99487 0.96057 0.93278 1.20926 1.00460 0.94758 0.97405 1.20936 0.98857 0.94925 0.97339 1.19296 0.98818 0.94886 0.93573 1.20721 0.93357 0.95328 1.04733 1.20448 0.89317 0.83682 0.76818 1.90735 1.70007 1.30856 1.49175 1.48321 1.07903 1.05201 1.72909 1.21643 0.95921 0.84727 0.99273 1.21835 0.97609 0.99285 0.98322 1.22086 0.93014 1.00127 1.02070 1.20623 0.85153 0.92094 0.96178 0.91827 1.43946 0.99076 1.69012 1.19352 1.20788 0.94111 0.94775 0.88549 1.19233 0.91846 1.38975 0.88351 0.91372 1.25032 0.98423 0.99885 0.96307 1.70067 1.14427 1.52453 1.18215 0.86224 0.80702 0.77497 0.81942 1.21526 1.21730 1.20501 1.22515 0.76405 1.03370 1.00173 1.20960 0.98685 0.94904 0.97409 1.20939 1.00366 0.94730 0.97436 0.92592 0.92552 0.92620 0.91100 0.91128 0.86333 0.86344 0.88304 0.88200 0.90380 0.91561 0.91241 0.91788 0.92258 0.91728 0.95358 0.93715 0.98294 0.93726 0.92229 0.89146 0.86249 0.86286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 37.16 0.37 -0.65 16 2 C -0.09 -0.71 6.06 -27.88 -0.17 -0.88 16 3 C -0.09 -0.94 5.13 -104.62 -0.54 -1.48 16 4 C -0.12 -1.31 9.70 -39.58 -0.38 -1.70 16 5 C -0.10 -1.23 9.70 -39.58 -0.38 -1.62 16 6 C -0.07 -0.82 4.37 -104.62 -0.46 -1.28 16 7 C -0.10 -1.14 4.18 -29.04 -0.12 -1.26 16 8 C 0.51 8.20 7.69 -10.98 -0.08 8.12 16 9 O -0.53 -11.12 15.45 5.56 0.09 -11.04 16 10 N -0.61 -9.49 2.98 -173.03 -0.52 -10.00 16 11 C 0.11 1.22 6.31 -3.93 -0.02 1.19 16 12 C -0.13 -1.59 6.06 -26.83 -0.16 -1.75 16 13 C -0.13 -2.17 5.13 -26.69 -0.14 -2.31 16 14 C 0.17 3.46 2.74 -67.81 -0.19 3.27 16 15 H 0.06 1.39 7.86 -51.93 -0.41 0.98 16 16 N -0.59 -14.83 2.82 -173.34 -0.49 -15.32 16 17 C 0.16 3.97 7.91 59.85 0.47 4.44 16 18 C -0.25 -7.08 9.60 -15.05 -0.14 -7.22 16 19 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 20 C 0.00 0.06 5.11 -17.43 -0.09 -0.03 16 21 N -0.91 -26.80 10.63 55.49 0.59 -26.21 16 22 Si 0.91 22.29 29.57 -169.99 -5.03 17.26 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 C 0.10 1.95 5.79 -3.71 -0.02 1.93 16 27 C -0.10 -1.25 9.70 -39.59 -0.38 -1.63 16 28 C -0.12 -1.33 9.70 -39.59 -0.38 -1.71 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 33 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.10 0.86 7.90 -51.93 -0.41 0.45 16 37 H 0.10 0.90 7.62 -51.93 -0.40 0.50 16 38 H 0.08 0.64 5.94 -51.93 -0.31 0.33 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.97 6.71 -51.93 -0.35 0.62 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.03 0.76 7.42 -51.92 -0.39 0.37 16 45 H 0.04 1.18 7.20 -51.93 -0.37 0.81 16 46 H 0.00 -0.03 6.45 -51.93 -0.33 -0.36 16 47 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 48 H 0.06 1.18 7.52 -51.92 -0.39 0.79 16 49 H 0.09 2.13 7.00 -51.93 -0.36 1.77 16 50 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 51 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 400.70 15.07 6.04 6.04 Total: -1.00 -33.33 400.70 -10.90 -44.23 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -8.75 Total: -0.41 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -2.83 Total: -4.56 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.41 Total: -51.53 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.33 -10.90 -44.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027595397.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.914 kcal (2) G-P(sol) polarization free energy of solvation -33.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds