Wall clock time and date at job start Tue Mar 31 2020 16:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.46860 * 2 1 4 4 C 1.38238 * 119.99897 * 90.00370 * 3 2 1 5 5 C 1.38232 * 120.00018 * 179.97438 * 4 3 2 6 6 C 1.38234 * 119.99781 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.99806 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47091 * 89.99847 * 7 6 5 9 9 O 1.21276 * 120.00424 * 0.02562 * 8 7 6 10 10 N 1.34784 * 120.00169 * 180.27533 * 8 7 6 11 11 C 1.46930 * 120.62773 * 359.44712 * 10 8 7 12 12 C 1.52765 * 109.00746 * 233.58455 * 11 10 8 13 13 C 1.53039 * 109.38385 * 305.58801 * 12 11 10 14 14 C 1.53047 * 109.53723 * 61.24040 * 13 12 11 15 15 H 1.09002 * 109.49577 * 58.58441 * 14 13 12 16 16 N 1.46494 * 109.49619 * 178.68623 * 14 13 12 17 17 C 1.46500 * 120.00427 * 59.83538 * 16 14 13 18 18 C 1.36942 * 119.99907 * 239.83882 * 16 14 13 19 19 H 1.08002 * 119.99799 * 22.06580 * 18 16 14 20 20 C 1.38819 * 119.99766 * 202.07032 * 18 16 14 21 21 N 1.31614 * 120.00250 * 12.40251 * 20 18 16 22 22 Si 1.86797 * 119.99550 * 192.40204 * 20 18 16 23 23 H 1.48497 * 109.47456 * 89.99644 * 22 20 18 24 24 H 1.48499 * 109.46888 * 210.00035 * 22 20 18 25 25 H 1.48505 * 109.47435 * 329.99638 * 22 20 18 26 26 C 1.46923 * 120.63158 * 179.72917 * 10 8 7 27 27 C 1.38237 * 120.00170 * 0.25474 * 6 5 4 28 28 C 1.38229 * 119.99638 * 359.46902 * 27 6 5 29 29 H 1.08995 * 109.47634 * 60.00087 * 1 2 3 30 30 H 1.09004 * 109.46603 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46691 * 299.99227 * 1 2 3 32 32 H 1.09001 * 109.47179 * 240.00186 * 2 1 3 33 33 H 1.08995 * 109.47634 * 119.99913 * 2 1 3 34 34 H 1.07999 * 119.99877 * 359.97438 * 4 3 2 35 35 H 1.07998 * 120.00210 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.47319 * 329.99835 * 7 6 5 37 37 H 1.08998 * 109.47446 * 209.99816 * 7 6 5 38 38 H 1.09002 * 109.58617 * 353.41727 * 11 10 8 39 39 H 1.08993 * 109.58666 * 113.84214 * 11 10 8 40 40 H 1.09002 * 109.56510 * 185.54877 * 12 11 10 41 41 H 1.09002 * 109.38469 * 65.51538 * 12 11 10 42 42 H 1.09003 * 109.45623 * 301.22324 * 13 12 11 43 43 H 1.08997 * 109.46038 * 181.26221 * 13 12 11 44 44 H 1.09007 * 109.46948 * 94.30233 * 17 16 14 45 45 H 1.08998 * 109.47870 * 214.30830 * 17 16 14 46 46 H 1.08998 * 109.47034 * 334.31070 * 17 16 14 47 47 H 0.96993 * 120.00244 * 180.02562 * 21 20 18 48 48 H 1.09008 * 109.58391 * 246.15614 * 26 10 8 49 49 H 1.08998 * 109.59048 * 6.43204 * 26 10 8 50 50 H 1.08001 * 119.99997 * 179.73207 * 27 6 5 51 51 H 1.08007 * 119.99687 * 180.27719 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7239 3.3756 1.1972 6 6 2.9552 4.0269 0.0001 7 6 3.4575 5.4478 0.0001 8 6 4.9644 5.4478 0.0013 9 8 5.5709 4.3976 0.0016 10 7 5.6383 6.6151 0.0072 11 6 4.9177 7.8955 0.0002 12 6 5.4315 8.7493 -1.1577 13 6 6.9524 8.8841 -1.0535 14 6 7.5968 7.4992 -1.1492 15 1 7.3174 7.0325 -2.0938 16 7 9.0541 7.6323 -1.0809 17 6 9.6801 8.2360 0.0980 18 6 9.8312 7.1923 -2.1191 19 1 9.4041 7.0839 -3.1051 20 6 11.1679 6.8856 -1.9040 21 7 11.6295 6.7800 -0.6760 22 14 12.3113 6.6228 -3.3576 23 1 12.9274 7.9177 -3.7433 24 1 13.3773 5.6600 -2.9810 25 1 11.5381 6.0816 -4.5042 26 6 7.1075 6.6313 0.0144 27 6 2.7203 3.3769 -1.1971 28 6 2.2645 2.0719 -1.1971 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.0824 1.5635 2.1325 35 1 2.9036 3.8849 2.1325 36 1 3.0934 5.9619 0.8896 37 1 3.0949 5.9614 -0.8903 38 1 3.8506 7.7135 -0.1273 39 1 5.0916 8.4178 0.9409 40 1 4.9747 9.7379 -1.1130 41 1 5.1725 8.2712 -2.1025 42 1 7.2119 9.3402 -0.0981 43 1 7.3178 9.5117 -1.8664 44 1 9.9686 7.4517 0.7979 45 1 10.5650 8.7949 -0.2065 46 1 8.9724 8.9105 0.5799 47 1 12.5636 6.5661 -0.5258 48 1 7.4636 7.0484 0.9564 49 1 7.4847 5.6152 -0.1010 50 1 2.8969 3.8872 -2.1324 51 1 2.0852 1.5625 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027595397.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:52 Heat of formation + Delta-G solvation = -17.283631 kcal Electronic energy + Delta-G solvation = -28341.320023 eV Core-core repulsion = 24625.831871 eV Total energy + Delta-G solvation = -3715.488151 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.38608 -40.20240 -38.82514 -36.76493 -35.52963 -34.01270 -32.81354 -32.27542 -31.79384 -30.47150 -28.27454 -28.06194 -26.10495 -25.26974 -23.96965 -23.63241 -23.03229 -21.69228 -20.90239 -19.81408 -18.79703 -18.17961 -17.31736 -17.04201 -16.80098 -16.52375 -16.01180 -15.91317 -15.67351 -15.24990 -15.22658 -14.71233 -14.59716 -14.56098 -14.38993 -14.24476 -13.94674 -13.88782 -13.69000 -13.50928 -13.01387 -12.91835 -12.86168 -12.81180 -12.55106 -12.46782 -12.21997 -12.14323 -12.07105 -12.04874 -11.73491 -11.71233 -11.64762 -11.59076 -11.38572 -10.83198 -10.66761 -9.77962 -9.65680 -9.39544 -8.78672 -7.86068 -5.34285 0.41011 0.54574 1.42686 1.43887 1.52875 1.67683 2.04632 2.48501 2.87164 3.27094 3.60957 3.66237 3.79680 3.89503 3.96610 4.02070 4.13483 4.14761 4.19051 4.21336 4.30334 4.38678 4.47928 4.50390 4.57160 4.60629 4.65368 4.71554 4.75036 4.77638 4.81167 4.91585 4.95911 5.05988 5.06624 5.09056 5.16882 5.20206 5.24278 5.25763 5.38839 5.43179 5.51266 5.54297 5.57132 5.61895 5.69770 5.69950 5.74753 6.15402 6.29755 6.52779 7.11867 7.24988 7.84182 8.26278 9.16719 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015112 B = 0.002588 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.431967 B =10817.298422 C =11893.839942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.129 4.129 5 C -0.117 4.117 6 C -0.085 4.085 7 C -0.088 4.088 8 C 0.504 3.496 9 O -0.592 6.592 10 N -0.608 5.608 11 C 0.101 3.899 12 C -0.123 4.123 13 C -0.123 4.123 14 C 0.167 3.833 15 H 0.042 0.958 16 N -0.610 5.610 17 C 0.181 3.819 18 C -0.264 4.264 19 H 0.066 0.934 20 C -0.055 4.055 21 N -0.938 5.938 22 Si 0.970 3.030 23 H -0.281 1.281 24 H -0.295 1.295 25 H -0.272 1.272 26 C 0.115 3.885 27 C -0.119 4.119 28 C -0.131 4.131 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.135 0.865 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.083 0.917 40 H 0.109 0.891 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.055 0.945 44 H -0.004 1.004 45 H 0.018 0.982 46 H 0.036 0.964 47 H 0.248 0.752 48 H 0.055 0.945 49 H 0.038 0.962 50 H 0.126 0.874 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.041 -1.844 3.017 27.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 C -0.093 4.093 4 C -0.147 4.147 5 C -0.135 4.135 6 C -0.086 4.086 7 C -0.127 4.127 8 C 0.294 3.706 9 O -0.472 6.472 10 N -0.341 5.341 11 C -0.020 4.020 12 C -0.162 4.162 13 C -0.163 4.163 14 C 0.059 3.941 15 H 0.061 0.939 16 N -0.333 5.333 17 C 0.036 3.964 18 C -0.394 4.394 19 H 0.084 0.916 20 C -0.250 4.250 21 N -0.585 5.585 22 Si 0.798 3.202 23 H -0.207 1.207 24 H -0.222 1.222 25 H -0.196 1.196 26 C -0.010 4.010 27 C -0.137 4.137 28 C -0.149 4.149 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.153 0.847 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.141 0.859 39 H 0.102 0.898 40 H 0.128 0.872 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.015 0.985 45 H 0.036 0.964 46 H 0.054 0.946 47 H 0.057 0.943 48 H 0.074 0.926 49 H 0.057 0.943 50 H 0.144 0.856 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -26.559 -2.407 3.070 26.844 hybrid contribution 1.770 -0.442 -0.581 1.915 sum -24.789 -2.849 2.488 25.076 Atomic orbital electron populations 1.21709 0.93656 1.02419 1.02044 1.20588 0.96997 0.91404 1.03258 1.20191 0.98845 0.97188 0.93080 1.21230 1.00318 0.94837 0.98347 1.21216 0.98945 0.95492 0.97820 1.19528 0.99400 0.95858 0.93777 1.20756 0.88782 0.95451 1.07718 1.21408 0.91396 0.82652 0.75133 1.90713 1.71616 1.33083 1.51796 1.48376 1.06012 1.07277 1.72413 1.22061 0.97746 0.82321 0.99842 1.21827 0.93980 1.01707 0.98661 1.21930 0.96138 0.96293 1.01896 1.20792 0.83007 0.94940 0.95358 0.93939 1.44185 1.00986 1.69237 1.18853 1.20478 0.94059 0.93943 0.87892 1.19537 0.92547 1.38151 0.89188 0.91573 1.25820 0.99959 1.00422 0.98804 1.70239 1.14302 1.53914 1.20028 0.85216 0.78482 0.77379 0.79076 1.20710 1.22206 1.19647 1.21907 0.79734 0.99943 0.99413 1.21212 0.99060 0.95529 0.97860 1.21220 1.00424 0.94810 0.98398 0.92758 0.91154 0.92646 0.90774 0.90617 0.84698 0.85263 0.84886 0.85201 0.85921 0.89830 0.87227 0.91860 0.91858 0.92621 0.98525 0.96358 0.94564 0.94256 0.92624 0.94298 0.85618 0.84930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.89 71.98 0.71 -1.02 16 2 C -0.09 -1.32 6.06 29.85 0.18 -1.14 16 3 C -0.09 -1.95 5.13 -19.86 -0.10 -2.05 16 4 C -0.13 -2.78 9.70 22.27 0.22 -2.56 16 5 C -0.12 -2.68 9.70 22.27 0.22 -2.46 16 6 C -0.09 -2.02 4.37 -19.87 -0.09 -2.10 16 7 C -0.09 -1.70 4.18 29.10 0.12 -1.58 16 8 C 0.50 15.75 7.69 87.65 0.67 16.42 16 9 O -0.59 -25.61 15.45 -3.02 -0.05 -25.66 16 10 N -0.61 -18.05 2.98 -819.72 -2.44 -20.49 16 11 C 0.10 1.83 6.31 86.22 0.54 2.38 16 12 C -0.12 -2.45 6.06 30.53 0.19 -2.26 16 13 C -0.12 -3.77 5.13 30.62 0.16 -3.61 16 14 C 0.17 6.92 2.74 45.07 0.12 7.05 16 15 H 0.04 1.91 7.86 -2.39 -0.02 1.89 16 16 N -0.61 -31.47 2.82 -702.32 -1.98 -33.45 16 17 C 0.18 9.11 7.91 127.77 1.01 10.13 16 18 C -0.26 -15.14 9.60 84.03 0.81 -14.33 16 19 H 0.07 3.73 7.81 -2.91 -0.02 3.70 16 20 C -0.06 -3.21 5.11 84.86 0.43 -2.78 16 21 N -0.94 -57.66 10.63 21.65 0.23 -57.43 16 22 Si 0.97 46.95 29.57 68.60 2.03 48.98 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 24 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 25 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 26 C 0.12 4.66 5.79 86.36 0.50 5.16 16 27 C -0.12 -2.82 9.70 22.27 0.22 -2.60 16 28 C -0.13 -2.89 9.70 22.27 0.22 -2.67 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 1.09 8.08 -2.39 -0.02 1.07 16 33 H 0.08 1.09 8.08 -2.39 -0.02 1.07 16 34 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 35 H 0.13 2.54 8.06 -2.91 -0.02 2.51 16 36 H 0.13 1.68 7.90 -2.39 -0.02 1.66 16 37 H 0.13 1.75 7.62 -2.39 -0.02 1.73 16 38 H 0.12 1.23 5.94 -2.39 -0.01 1.21 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 40 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.06 1.89 6.71 -2.39 -0.02 1.87 16 43 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.00 -0.20 7.42 -2.38 -0.02 -0.22 16 45 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 46 H 0.04 1.51 6.45 -2.39 -0.02 1.50 16 47 H 0.25 14.81 8.31 -92.71 -0.77 14.03 16 48 H 0.06 2.26 7.52 -2.38 -0.02 2.24 16 49 H 0.04 1.95 7.00 -2.39 -0.02 1.94 16 50 H 0.13 2.67 8.06 -2.91 -0.02 2.64 16 51 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -78.68 400.70 4.81 -73.87 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.89 Total: 14.23 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 6.13 Total: -0.05 kcal Atomic # 7 Polarization: -107.19 SS G_CDS: -4.19 Total: -111.38 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.05 Total: -25.66 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -78.68 4.81 -73.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027595397.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.589 kcal (2) G-P(sol) polarization free energy of solvation -78.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds