Wall clock time and date at job start Tue Mar 31 2020 16:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 C 1.38388 * 119.85147 * 265.00184 * 3 2 1 5 5 C 1.37934 * 120.14616 * 180.02562 * 4 3 2 6 6 C 1.39603 * 119.85107 * 359.97052 * 5 4 3 7 7 C 1.47847 * 120.14029 * 180.02562 * 6 5 4 8 8 O 1.21558 * 119.99598 * 180.02562 * 7 6 5 9 9 N 1.34772 * 120.00109 * 359.97438 * 7 6 5 10 10 C 1.46496 * 119.99841 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47272 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.88374 * 51.11547 * 11 10 9 13 13 C 1.55158 * 111.00718 * 174.99994 * 11 10 9 14 14 C 1.54318 * 102.94535 * 153.57541 * 13 11 10 15 15 N 1.47025 * 107.26941 * 337.80796 * 14 13 11 16 16 C 1.36939 * 125.64942 * 178.91870 * 15 14 13 17 17 H 1.08003 * 120.00361 * 180.02562 * 16 15 14 18 18 C 1.38818 * 119.99708 * 0.02562 * 16 15 14 19 19 N 1.31614 * 120.00115 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99835 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47082 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47084 * 119.99954 * 20 18 16 23 23 H 1.48497 * 109.46997 * 239.99920 * 20 18 16 24 24 C 1.47423 * 108.70404 * 358.93850 * 15 14 13 25 25 C 1.39557 * 119.71179 * 0.02562 * 6 5 4 26 26 C 1.37982 * 119.85139 * 359.77101 * 25 6 5 27 27 C 1.50696 * 119.92420 * 180.23176 * 26 25 6 28 28 C 1.53006 * 109.46670 * 265.25193 * 27 26 25 29 29 H 1.09001 * 109.46801 * 300.00442 * 1 2 3 30 30 H 1.09001 * 109.46998 * 60.00038 * 1 2 3 31 31 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47002 * 119.99404 * 2 1 3 33 33 H 1.08993 * 109.46955 * 239.99842 * 2 1 3 34 34 H 1.07998 * 119.92419 * 359.96968 * 4 3 2 35 35 H 1.08002 * 120.07563 * 179.97438 * 5 4 3 36 36 H 0.97000 * 120.00341 * 0.02562 * 9 7 6 37 37 H 1.09002 * 109.47673 * 299.99699 * 10 9 7 38 38 H 1.09009 * 109.47544 * 59.99954 * 10 9 7 39 39 H 1.08999 * 110.71945 * 271.93920 * 13 11 10 40 40 H 1.09004 * 110.72209 * 35.03684 * 13 11 10 41 41 H 1.08997 * 109.88614 * 97.22343 * 14 13 11 42 42 H 1.08999 * 109.88641 * 218.39141 * 14 13 11 43 43 H 0.97007 * 120.00014 * 180.02562 * 19 18 16 44 44 H 1.08998 * 110.36748 * 265.28712 * 24 15 14 45 45 H 1.08999 * 110.36617 * 142.96716 * 24 15 14 46 46 H 1.07997 * 120.07342 * 179.97438 * 25 6 5 47 47 H 1.09002 * 109.47577 * 25.24793 * 27 26 25 48 48 H 1.08999 * 109.47384 * 145.25874 * 27 26 25 49 49 H 1.08997 * 109.46994 * 60.00657 * 28 27 26 50 50 H 1.09002 * 109.46939 * 179.97438 * 28 27 26 51 51 H 1.08999 * 109.47142 * 299.99686 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3606 2.0354 -1.1957 5 6 2.8215 3.3354 -1.2027 6 6 2.9559 4.0315 -0.0001 7 6 3.4488 5.4254 -0.0002 8 8 3.5653 6.0289 1.0485 9 7 3.7698 6.0265 -1.1630 10 6 4.2587 7.4075 -1.1630 11 6 4.5484 7.8460 -2.5999 12 1 3.6941 7.6465 -3.2468 13 6 4.9493 9.3439 -2.6543 14 6 5.8209 9.4226 -3.9252 15 7 6.3233 8.0673 -4.1946 16 6 7.1190 7.7060 -5.2488 17 1 7.4360 6.6794 -5.3592 18 6 7.5183 8.6592 -6.1757 19 7 7.1325 9.9102 -6.0409 20 14 8.6032 8.1661 -7.6142 21 1 8.8956 6.7121 -7.5382 22 1 7.9014 8.4644 -8.8885 23 1 9.8754 8.9300 -7.5593 24 6 5.8281 7.1617 -3.1419 25 6 2.6231 3.4059 1.2022 26 6 2.1593 2.1064 1.1948 27 6 1.7945 1.4310 2.4916 28 6 2.9897 0.6215 2.9988 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5137 0.8901 33 1 1.8933 -0.5138 -0.8899 34 1 2.2565 1.4955 -2.1253 35 1 3.0777 3.8138 -2.1365 36 1 3.6772 5.5448 -1.9998 37 1 3.5019 8.0610 -0.7290 38 1 5.1734 7.4692 -0.5733 39 1 4.0667 9.9760 -2.7522 40 1 5.5246 9.6215 -1.7710 41 1 5.2201 9.7691 -4.7660 42 1 6.6572 10.1018 -3.7598 43 1 7.4112 10.5763 -6.6888 44 1 6.5691 7.0606 -2.3490 45 1 5.5869 6.1860 -3.5636 46 1 2.7253 3.9387 2.1359 47 1 1.5264 2.1853 3.2313 48 1 0.9474 0.7647 2.3285 49 1 3.8368 1.2877 3.1619 50 1 2.7260 0.1333 3.9370 51 1 3.2578 -0.1329 2.2591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029028752.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:36 Heat of formation + Delta-G solvation = -11.456957 kcal Electronic energy + Delta-G solvation = -27631.243668 eV Core-core repulsion = 23916.008180 eV Total energy + Delta-G solvation = -3715.235488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.52239 -39.12662 -37.60919 -35.02522 -34.64968 -33.74907 -32.50371 -30.32613 -30.02840 -29.31500 -28.14959 -25.73431 -24.96423 -24.13114 -23.17497 -21.87715 -21.82972 -20.29539 -19.97791 -19.46705 -17.68511 -16.81896 -16.63583 -15.85510 -15.70075 -15.31864 -15.08138 -14.65309 -14.45438 -14.15854 -13.95713 -13.94668 -13.81358 -13.56932 -13.47678 -13.11159 -12.80094 -12.70000 -12.34812 -12.17034 -12.05662 -11.84373 -11.72495 -11.64779 -11.46207 -11.39395 -11.09637 -10.91568 -10.90006 -10.81832 -10.41008 -10.15251 -10.01447 -9.89381 -9.75181 -9.65973 -9.11709 -9.02193 -8.78706 -8.61106 -6.83824 -5.72034 -3.05543 0.65834 1.12506 2.76924 3.20219 3.38910 3.44281 3.46878 3.67543 4.33067 4.39538 4.48592 4.54654 4.62933 4.71496 4.89270 4.95060 4.95888 5.05617 5.11243 5.13529 5.22302 5.24853 5.29313 5.42267 5.43194 5.50677 5.54553 5.57050 5.63828 5.68423 5.70379 5.79835 5.83113 5.89488 5.96585 6.03542 6.06212 6.09555 6.18611 6.33991 6.34852 6.42879 6.49415 6.53614 6.65595 6.69549 6.90852 7.54259 7.55823 7.63078 7.82346 8.22797 8.25382 9.21486 9.81883 10.48008 11.39788 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017433 B = 0.002184 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.729104 B =12818.658140 C =13795.669369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.058 4.058 4 C -0.123 4.123 5 C -0.086 4.086 6 C -0.133 4.133 7 C 0.555 3.445 8 O -0.543 6.543 9 N -0.719 5.719 10 C 0.132 3.868 11 C -0.118 4.118 12 H 0.079 0.921 13 C -0.135 4.135 14 C 0.177 3.823 15 N -0.607 5.607 16 C -0.228 4.228 17 H 0.078 0.922 18 C -0.010 4.010 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.142 3.858 25 C -0.056 4.056 26 C -0.090 4.090 27 C -0.088 4.088 28 C -0.149 4.149 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.401 0.599 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.046 0.954 42 H 0.043 0.957 43 H 0.252 0.748 44 H 0.020 0.980 45 H 0.035 0.965 46 H 0.134 0.866 47 H 0.073 0.927 48 H 0.076 0.924 49 H 0.058 0.942 50 H 0.058 0.942 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.254 -18.870 14.635 27.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.129 4.129 3 C -0.058 4.058 4 C -0.141 4.141 5 C -0.105 4.105 6 C -0.136 4.136 7 C 0.342 3.658 8 O -0.422 6.422 9 N -0.370 5.370 10 C 0.009 3.991 11 C -0.138 4.138 12 H 0.098 0.902 13 C -0.174 4.174 14 C 0.053 3.947 15 N -0.333 5.333 16 C -0.356 4.356 17 H 0.096 0.904 18 C -0.206 4.206 19 N -0.569 5.569 20 Si 0.742 3.258 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.016 3.984 25 C -0.075 4.075 26 C -0.091 4.091 27 C -0.125 4.125 28 C -0.206 4.206 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.236 0.764 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.037 0.963 45 H 0.053 0.947 46 H 0.152 0.848 47 H 0.091 0.909 48 H 0.095 0.905 49 H 0.077 0.923 50 H 0.077 0.923 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.044 -18.300 15.179 27.614 hybrid contribution 0.633 -0.272 -1.380 1.543 sum -13.412 -18.572 13.799 26.743 Atomic orbital electron populations 1.21768 0.94503 1.01841 1.02429 1.20665 0.96379 0.92582 1.03264 1.19941 0.97185 0.96069 0.92593 1.20974 1.00425 0.94902 0.97759 1.21335 0.97340 0.94661 0.97161 1.19962 1.04734 0.94417 0.94470 1.18274 0.77573 0.86024 0.83885 1.90757 1.54095 1.65995 1.31352 1.46006 1.66479 1.15672 1.08861 1.21437 0.99363 0.80806 0.97510 1.22622 0.99458 0.97937 0.93754 0.90227 1.22858 1.00032 0.93682 1.00789 1.21147 0.94980 0.87070 0.91552 1.44495 1.58386 1.04104 1.26313 1.19101 1.22242 0.94297 0.99984 0.90440 1.24815 1.00880 0.95612 0.99261 1.69976 1.49124 1.00827 1.37000 0.86045 0.79930 0.77536 0.82255 1.20525 1.21760 1.21750 1.21585 0.91922 0.93465 0.91470 1.21129 0.94994 0.93619 0.97745 1.19688 1.00498 0.93938 0.94927 1.20603 0.98795 0.99397 0.93675 1.21780 0.98003 1.00047 1.00792 0.92352 0.92382 0.92261 0.90408 0.90839 0.85416 0.85435 0.76376 0.91513 0.91181 0.91971 0.92163 0.93539 0.93878 0.93801 0.96264 0.94681 0.84783 0.90865 0.90537 0.92327 0.92305 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.72 37.16 0.36 -0.45 16 2 C -0.09 -0.56 5.37 -27.88 -0.15 -0.71 16 3 C -0.06 -0.49 5.14 -104.53 -0.54 -1.02 16 4 C -0.12 -1.08 9.66 -39.64 -0.38 -1.46 16 5 C -0.09 -0.87 9.54 -39.18 -0.37 -1.24 16 6 C -0.13 -1.61 5.87 -104.96 -0.62 -2.23 16 7 C 0.56 8.07 7.77 -12.33 -0.10 7.98 16 8 O -0.54 -9.66 16.35 5.31 0.09 -9.57 16 9 N -0.72 -9.62 5.45 -61.25 -0.33 -9.96 16 10 C 0.13 1.95 5.13 -4.04 -0.02 1.93 16 11 C -0.12 -1.96 3.05 -88.47 -0.27 -2.23 16 12 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 13 C -0.13 -2.46 6.42 -24.90 -0.16 -2.62 16 14 C 0.18 4.28 5.37 -3.07 -0.02 4.27 16 15 N -0.61 -15.43 3.39 -170.07 -0.58 -16.01 16 16 C -0.23 -6.35 10.28 -15.06 -0.15 -6.51 16 17 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 18 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 19 N -0.92 -27.15 10.31 55.49 0.57 -26.57 16 20 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 C 0.14 2.86 6.65 -2.53 -0.02 2.84 16 25 C -0.06 -0.63 9.22 -39.18 -0.36 -0.99 16 26 C -0.09 -0.83 5.13 -104.68 -0.54 -1.36 16 27 C -0.09 -0.61 5.38 -27.88 -0.15 -0.76 16 28 C -0.15 -0.95 9.72 37.16 0.36 -0.59 16 29 H 0.06 0.33 6.77 -51.93 -0.35 -0.02 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.43 5.61 -51.93 -0.29 0.14 16 33 H 0.07 0.40 8.05 -51.93 -0.42 -0.02 16 34 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.13 1.09 6.41 -52.49 -0.34 0.75 16 36 H 0.40 4.59 6.51 -40.82 -0.27 4.33 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.11 7.96 -51.92 -0.41 0.70 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.05 8.04 -51.93 -0.42 0.63 16 41 H 0.05 1.24 7.38 -51.93 -0.38 0.85 16 42 H 0.04 1.16 7.51 -51.93 -0.39 0.77 16 43 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.02 0.40 7.91 -51.93 -0.41 -0.01 16 45 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.13 1.55 7.65 -52.49 -0.40 1.15 16 47 H 0.07 0.49 8.05 -51.93 -0.42 0.07 16 48 H 0.08 0.44 5.57 -51.93 -0.29 0.15 16 49 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 51 H 0.06 0.35 6.79 -51.93 -0.35 0.00 16 LS Contribution 400.82 15.07 6.04 6.04 Total: -1.00 -32.74 400.82 -10.94 -43.68 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -8.49 Total: 0.84 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -3.22 Total: -5.53 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -0.34 Total: -52.54 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.74 -10.94 -43.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029028752.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.225 kcal (2) G-P(sol) polarization free energy of solvation -32.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds