Wall clock time and date at job start Tue Mar 31 2020 16:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 C 1.38388 * 119.85147 * 265.00184 * 3 2 1 5 5 C 1.37934 * 120.14616 * 180.02562 * 4 3 2 6 6 C 1.39603 * 119.85107 * 359.97052 * 5 4 3 7 7 C 1.47847 * 120.14029 * 180.02562 * 6 5 4 8 8 O 1.21558 * 119.99598 * 180.02562 * 7 6 5 9 9 N 1.34772 * 120.00109 * 359.97438 * 7 6 5 10 10 C 1.46496 * 119.99841 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47272 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.88374 * 51.11547 * 11 10 9 13 13 C 1.55158 * 111.00718 * 174.99994 * 11 10 9 14 14 C 1.54318 * 102.94535 * 153.57541 * 13 11 10 15 15 N 1.47025 * 107.26941 * 337.80796 * 14 13 11 16 16 C 1.36939 * 125.64942 * 178.91870 * 15 14 13 17 17 H 1.08003 * 120.00361 * 180.02562 * 16 15 14 18 18 C 1.38818 * 119.99708 * 0.02562 * 16 15 14 19 19 N 1.31614 * 120.00115 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99835 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47082 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47084 * 119.99954 * 20 18 16 23 23 H 1.48497 * 109.46997 * 239.99920 * 20 18 16 24 24 C 1.47423 * 108.70404 * 358.93850 * 15 14 13 25 25 C 1.39557 * 119.71179 * 0.02562 * 6 5 4 26 26 C 1.37982 * 119.85139 * 359.77101 * 25 6 5 27 27 C 1.50696 * 119.92420 * 180.23176 * 26 25 6 28 28 C 1.53006 * 109.46670 * 265.25193 * 27 26 25 29 29 H 1.09001 * 109.46801 * 300.00442 * 1 2 3 30 30 H 1.09001 * 109.46998 * 60.00038 * 1 2 3 31 31 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47002 * 119.99404 * 2 1 3 33 33 H 1.08993 * 109.46955 * 239.99842 * 2 1 3 34 34 H 1.07998 * 119.92419 * 359.96968 * 4 3 2 35 35 H 1.08002 * 120.07563 * 179.97438 * 5 4 3 36 36 H 0.97000 * 120.00341 * 0.02562 * 9 7 6 37 37 H 1.09002 * 109.47673 * 299.99699 * 10 9 7 38 38 H 1.09009 * 109.47544 * 59.99954 * 10 9 7 39 39 H 1.08999 * 110.71945 * 271.93920 * 13 11 10 40 40 H 1.09004 * 110.72209 * 35.03684 * 13 11 10 41 41 H 1.08997 * 109.88614 * 97.22343 * 14 13 11 42 42 H 1.08999 * 109.88641 * 218.39141 * 14 13 11 43 43 H 0.97007 * 120.00014 * 180.02562 * 19 18 16 44 44 H 1.08998 * 110.36748 * 265.28712 * 24 15 14 45 45 H 1.08999 * 110.36617 * 142.96716 * 24 15 14 46 46 H 1.07997 * 120.07342 * 179.97438 * 25 6 5 47 47 H 1.09002 * 109.47577 * 25.24793 * 27 26 25 48 48 H 1.08999 * 109.47384 * 145.25874 * 27 26 25 49 49 H 1.08997 * 109.46994 * 60.00657 * 28 27 26 50 50 H 1.09002 * 109.46939 * 179.97438 * 28 27 26 51 51 H 1.08999 * 109.47142 * 299.99686 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3606 2.0354 -1.1957 5 6 2.8215 3.3354 -1.2027 6 6 2.9559 4.0315 -0.0001 7 6 3.4488 5.4254 -0.0002 8 8 3.5653 6.0289 1.0485 9 7 3.7698 6.0265 -1.1630 10 6 4.2587 7.4075 -1.1630 11 6 4.5484 7.8460 -2.5999 12 1 3.6941 7.6465 -3.2468 13 6 4.9493 9.3439 -2.6543 14 6 5.8209 9.4226 -3.9252 15 7 6.3233 8.0673 -4.1946 16 6 7.1190 7.7060 -5.2488 17 1 7.4360 6.6794 -5.3592 18 6 7.5183 8.6592 -6.1757 19 7 7.1325 9.9102 -6.0409 20 14 8.6032 8.1661 -7.6142 21 1 8.8956 6.7121 -7.5382 22 1 7.9014 8.4644 -8.8885 23 1 9.8754 8.9300 -7.5593 24 6 5.8281 7.1617 -3.1419 25 6 2.6231 3.4059 1.2022 26 6 2.1593 2.1064 1.1948 27 6 1.7945 1.4310 2.4916 28 6 2.9897 0.6215 2.9988 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5137 0.8901 33 1 1.8933 -0.5138 -0.8899 34 1 2.2565 1.4955 -2.1253 35 1 3.0777 3.8138 -2.1365 36 1 3.6772 5.5448 -1.9998 37 1 3.5019 8.0610 -0.7290 38 1 5.1734 7.4692 -0.5733 39 1 4.0667 9.9760 -2.7522 40 1 5.5246 9.6215 -1.7710 41 1 5.2201 9.7691 -4.7660 42 1 6.6572 10.1018 -3.7598 43 1 7.4112 10.5763 -6.6888 44 1 6.5691 7.0606 -2.3490 45 1 5.5869 6.1860 -3.5636 46 1 2.7253 3.9387 2.1359 47 1 1.5264 2.1853 3.2313 48 1 0.9474 0.7647 2.3285 49 1 3.8368 1.2877 3.1619 50 1 2.7260 0.1333 3.9370 51 1 3.2578 -0.1329 2.2591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029028752.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:35 Heat of formation + Delta-G solvation = -29.448053 kcal Electronic energy + Delta-G solvation = -27632.023820 eV Core-core repulsion = 23916.008180 eV Total energy + Delta-G solvation = -3716.015640 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.42601 -40.13048 -39.18976 -36.14595 -35.64881 -34.35667 -34.26860 -31.76814 -30.89001 -30.43727 -29.55038 -27.34086 -25.94322 -25.22212 -24.20383 -22.75861 -22.48379 -21.94104 -21.44391 -20.57954 -18.94419 -18.49526 -17.59188 -16.95461 -16.64100 -16.52562 -16.34640 -16.08767 -15.72863 -15.36976 -14.86025 -14.71005 -14.62816 -14.56487 -14.41116 -14.13465 -13.99123 -13.83364 -13.49553 -13.43654 -13.22366 -13.05340 -12.78041 -12.77332 -12.66239 -12.49078 -12.12091 -12.05006 -11.98362 -11.91316 -11.86460 -11.68782 -11.56664 -11.47876 -11.45415 -10.98377 -10.72010 -10.20302 -9.82038 -9.56540 -8.90481 -7.85501 -5.21128 -0.16161 0.38888 1.45691 1.46818 1.57070 1.80659 2.11468 2.49068 2.83087 3.32835 3.57490 3.62530 3.72629 3.80260 3.86918 3.95861 4.00756 4.03292 4.13587 4.21730 4.40135 4.43996 4.48210 4.54236 4.54668 4.60028 4.60710 4.68983 4.78436 4.78816 4.87721 4.90691 5.01878 5.03304 5.06849 5.07101 5.09672 5.12082 5.23103 5.29007 5.34400 5.35143 5.43980 5.45422 5.47653 5.50515 5.66976 5.67289 5.77492 5.95952 6.19684 6.48113 7.10024 7.13685 7.77483 8.41976 9.25260 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017433 B = 0.002184 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.729104 B =12818.658140 C =13795.669369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.054 4.054 4 C -0.125 4.125 5 C -0.088 4.088 6 C -0.155 4.155 7 C 0.555 3.445 8 O -0.584 6.584 9 N -0.711 5.711 10 C 0.144 3.856 11 C -0.095 4.095 12 H 0.092 0.908 13 C -0.123 4.123 14 C 0.183 3.817 15 N -0.629 5.629 16 C -0.240 4.240 17 H 0.084 0.916 18 C -0.070 4.070 19 N -0.952 5.952 20 Si 0.979 3.021 21 H -0.264 1.264 22 H -0.291 1.291 23 H -0.294 1.294 24 C 0.137 3.863 25 C -0.072 4.072 26 C -0.093 4.093 27 C -0.087 4.087 28 C -0.147 4.147 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.152 0.848 35 H 0.142 0.858 36 H 0.411 0.589 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.014 0.986 42 H 0.004 0.996 43 H 0.246 0.754 44 H 0.017 0.983 45 H 0.049 0.951 46 H 0.121 0.879 47 H 0.071 0.929 48 H 0.092 0.908 49 H 0.043 0.957 50 H 0.073 0.927 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.521 -21.790 14.656 30.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.128 4.128 3 C -0.054 4.054 4 C -0.143 4.143 5 C -0.106 4.106 6 C -0.158 4.158 7 C 0.344 3.656 8 O -0.465 6.465 9 N -0.363 5.363 10 C 0.020 3.980 11 C -0.114 4.114 12 H 0.110 0.890 13 C -0.162 4.162 14 C 0.058 3.942 15 N -0.355 5.355 16 C -0.369 4.369 17 H 0.102 0.898 18 C -0.262 4.262 19 N -0.602 5.602 20 Si 0.807 3.193 21 H -0.188 1.188 22 H -0.218 1.218 23 H -0.222 1.222 24 C 0.012 3.988 25 C -0.091 4.091 26 C -0.093 4.093 27 C -0.124 4.124 28 C -0.204 4.204 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.170 0.830 35 H 0.159 0.841 36 H 0.249 0.751 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.089 0.911 41 H 0.032 0.968 42 H 0.022 0.978 43 H 0.056 0.944 44 H 0.035 0.965 45 H 0.067 0.933 46 H 0.139 0.861 47 H 0.090 0.910 48 H 0.111 0.889 49 H 0.062 0.938 50 H 0.092 0.908 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.325 -21.263 15.203 30.300 hybrid contribution 1.014 0.556 -1.351 1.779 sum -14.311 -20.707 13.851 28.730 Atomic orbital electron populations 1.21763 0.93883 1.02697 1.02086 1.20738 0.96771 0.90946 1.04317 1.20300 0.95789 0.97183 0.92124 1.21304 0.99565 0.94476 0.98944 1.21507 0.97102 0.95223 0.96816 1.19855 1.06787 0.93404 0.95722 1.18664 0.76791 0.86842 0.83334 1.90729 1.55982 1.67131 1.32689 1.45884 1.65988 1.15151 1.09257 1.21204 0.99287 0.81805 0.95732 1.22417 0.98046 0.96047 0.94933 0.89012 1.22724 0.99950 0.95508 0.97972 1.20917 0.93984 0.86128 0.93171 1.44822 1.58331 1.05508 1.26872 1.19512 1.22203 0.94611 1.00621 0.89840 1.25685 1.02702 0.95709 1.02132 1.70200 1.50457 1.01750 1.37758 0.84998 0.77661 0.77875 0.78733 1.18823 1.21796 1.22173 1.21763 0.93208 0.93605 0.90187 1.21168 0.96075 0.94695 0.97128 1.19919 0.99808 0.93173 0.96363 1.20657 0.99543 0.99578 0.92607 1.21769 0.97192 0.99784 1.01685 0.92632 0.92837 0.90832 0.89534 0.89683 0.83049 0.84079 0.75105 0.90624 0.92233 0.89517 0.91106 0.96781 0.97806 0.94447 0.96536 0.93276 0.86116 0.91031 0.88927 0.93791 0.90825 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.72 71.98 0.70 -0.49 16 2 C -0.09 -0.83 5.37 29.85 0.16 -0.67 16 3 C -0.05 -0.78 5.14 -19.81 -0.10 -0.88 16 4 C -0.13 -1.89 9.66 22.23 0.21 -1.67 16 5 C -0.09 -1.62 9.54 22.53 0.21 -1.40 16 6 C -0.15 -3.68 5.87 -20.09 -0.12 -3.79 16 7 C 0.55 15.98 7.77 86.79 0.67 16.66 16 8 O -0.58 -21.07 16.35 -3.90 -0.06 -21.14 16 9 N -0.71 -18.11 5.45 -465.96 -2.54 -20.65 16 10 C 0.14 4.03 5.13 86.38 0.44 4.47 16 11 C -0.09 -3.00 3.05 -9.40 -0.03 -3.02 16 12 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 13 C -0.12 -4.38 6.42 31.78 0.20 -4.17 16 14 C 0.18 9.07 5.37 86.73 0.47 9.54 16 15 N -0.63 -32.25 3.39 -691.99 -2.35 -34.59 16 16 C -0.24 -13.48 10.28 84.03 0.86 -12.62 16 17 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 18 C -0.07 -3.98 5.49 84.86 0.47 -3.52 16 19 N -0.95 -57.86 10.31 21.65 0.22 -57.64 16 20 Si 0.98 45.87 29.55 68.60 2.03 47.90 16 21 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 23 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 24 C 0.14 5.40 6.65 86.86 0.58 5.98 16 25 C -0.07 -1.62 9.22 22.53 0.21 -1.41 16 26 C -0.09 -1.58 5.13 -19.90 -0.10 -1.68 16 27 C -0.09 -1.07 5.38 29.85 0.16 -0.91 16 28 C -0.15 -1.65 9.72 71.98 0.70 -0.95 16 29 H 0.05 0.48 6.77 -2.39 -0.02 0.47 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.09 0.67 5.61 -2.39 -0.01 0.66 16 33 H 0.08 0.62 8.05 -2.39 -0.02 0.60 16 34 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 35 H 0.14 2.09 6.41 -2.91 -0.02 2.07 16 36 H 0.41 8.62 6.51 -92.71 -0.60 8.02 16 37 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.06 1.84 7.96 -2.38 -0.02 1.82 16 39 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.07 2.39 8.04 -2.38 -0.02 2.37 16 41 H 0.01 0.77 7.38 -2.39 -0.02 0.75 16 42 H 0.00 0.21 7.51 -2.39 -0.02 0.19 16 43 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 44 H 0.02 0.68 7.91 -2.39 -0.02 0.66 16 45 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.12 2.95 7.65 -2.91 -0.02 2.93 16 47 H 0.07 0.91 8.05 -2.39 -0.02 0.89 16 48 H 0.09 0.85 5.57 -2.39 -0.01 0.83 16 49 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 50 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.06 0.63 6.79 -2.39 -0.02 0.62 16 Total: -1.00 -73.05 400.82 3.31 -69.73 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.31 Total: 16.93 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 5.70 Total: -0.55 kcal Atomic # 7 Polarization: -108.22 SS G_CDS: -4.67 Total: -112.88 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.06 Total: -21.14 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -73.05 3.31 -69.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029028752.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.286 kcal (2) G-P(sol) polarization free energy of solvation -73.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds