Wall clock time and date at job start Tue Mar 31 2020 16:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46838 * 2 1 4 4 C 1.38236 * 120.00193 * 89.99978 * 3 2 1 5 5 C 1.38231 * 120.00249 * 179.97438 * 4 3 2 6 6 C 1.38239 * 119.99972 * 359.96274 * 5 4 3 7 7 C 1.50697 * 120.00265 * 180.02562 * 6 5 4 8 8 H 1.09001 * 109.46998 * 359.97438 * 7 6 5 9 9 C 1.52996 * 109.47430 * 119.99517 * 7 6 5 10 10 C 1.50707 * 109.46894 * 239.99848 * 7 6 5 11 11 O 1.21281 * 119.99733 * 350.66009 * 10 7 6 12 12 N 1.34777 * 119.99871 * 170.66321 * 10 7 6 13 13 C 1.46497 * 119.99633 * 185.76350 * 12 10 7 14 14 C 1.46495 * 120.00107 * 5.76002 * 12 10 7 15 15 H 1.08998 * 110.64241 * 359.54805 * 14 12 10 16 16 C 1.55153 * 110.87340 * 122.79741 * 14 12 10 17 17 C 1.55122 * 101.48776 * 82.76715 * 16 14 12 18 18 N 1.47425 * 104.72252 * 37.29810 * 17 16 14 19 19 C 1.36935 * 125.64847 * 155.82306 * 18 17 16 20 20 H 1.08002 * 119.99700 * 4.80913 * 19 18 17 21 21 C 1.38802 * 120.00198 * 184.81713 * 19 18 17 22 22 N 1.31628 * 120.00054 * 5.34314 * 21 19 18 23 23 Si 1.86806 * 120.00301 * 185.34935 * 21 19 18 24 24 H 1.48496 * 109.47104 * 264.99906 * 23 21 19 25 25 H 1.48498 * 109.46790 * 24.99972 * 23 21 19 26 26 H 1.48502 * 109.47144 * 144.99853 * 23 21 19 27 27 C 1.47021 * 108.70022 * 335.55290 * 18 17 16 28 28 C 1.38238 * 119.99878 * 0.26802 * 6 5 4 29 29 C 1.38231 * 119.99883 * 269.97244 * 3 2 1 30 30 H 1.09003 * 109.46784 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47011 * 300.00246 * 1 2 3 32 32 H 1.08995 * 109.47022 * 59.99955 * 1 2 3 33 33 H 1.08993 * 109.47619 * 239.99684 * 2 1 3 34 34 H 1.09004 * 109.47310 * 119.99528 * 2 1 3 35 35 H 1.07998 * 119.99879 * 359.97438 * 4 3 2 36 36 H 1.07998 * 120.00389 * 179.97438 * 5 4 3 37 37 H 1.09001 * 109.46850 * 64.93673 * 9 7 6 38 38 H 1.09004 * 109.47161 * 184.93660 * 9 7 6 39 39 H 1.09001 * 109.47440 * 304.93877 * 9 7 6 40 40 H 1.08995 * 109.47269 * 273.89799 * 13 12 10 41 41 H 1.09002 * 109.47418 * 33.90373 * 13 12 10 42 42 H 1.09004 * 109.46895 * 153.90110 * 13 12 10 43 43 H 1.09002 * 111.00570 * 201.00795 * 16 14 12 44 44 H 1.09001 * 111.00422 * 324.81724 * 16 14 12 45 45 H 1.09004 * 110.49445 * 278.45529 * 17 16 14 46 46 H 1.09007 * 110.34399 * 156.06555 * 17 16 14 47 47 H 0.96999 * 119.99754 * 180.02562 * 22 21 19 48 48 H 1.08995 * 109.87680 * 120.70675 * 27 18 17 49 49 H 1.09000 * 109.87964 * 241.86902 * 27 18 17 50 50 H 1.08003 * 120.00260 * 179.72848 * 28 6 5 51 51 H 1.07996 * 120.00227 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2626 2.0726 1.1971 5 6 2.7239 3.3757 1.1972 6 6 2.9555 4.0269 0.0000 7 6 3.4588 5.4473 -0.0001 8 1 3.5791 5.7902 1.0276 9 6 4.8071 5.5106 -0.7204 10 6 2.4672 6.3316 -0.7114 11 8 1.5404 5.8377 -1.3180 12 7 2.6104 7.6712 -0.6734 13 6 1.5802 8.5347 -1.2559 14 6 3.7961 8.2637 -0.0496 15 1 4.4548 7.4869 0.3387 16 6 4.5524 9.1736 -1.0532 17 6 3.7475 10.4948 -0.9396 18 7 3.3928 10.5959 0.4878 19 6 3.1066 11.7547 1.1589 20 1 3.0540 12.6905 0.6223 21 6 2.8841 11.7266 2.5287 22 7 3.0511 10.6066 3.1997 23 14 2.3474 13.2782 3.4198 24 1 3.5385 13.9614 3.9852 25 1 1.6630 14.1860 2.4646 26 1 1.4141 12.9205 4.5182 27 6 3.3911 9.2458 1.0698 28 6 2.7206 3.3768 -1.1972 29 6 2.2632 2.0723 -1.1971 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.0823 1.5636 2.1324 36 1 2.9034 3.8850 2.1324 37 1 4.6705 5.2520 -1.7705 38 1 5.2126 6.5196 -0.6444 39 1 5.4988 4.8054 -0.2596 40 1 1.7753 8.6659 -2.3202 41 1 0.6013 8.0751 -1.1198 42 1 1.5976 9.5057 -0.7609 43 1 5.5888 9.3161 -0.7471 44 1 4.4979 8.7700 -2.0643 45 1 2.8469 10.4468 -1.5518 46 1 4.3653 11.3419 -1.2380 47 1 2.8953 10.5870 4.1569 48 1 4.1104 9.1936 1.8870 49 1 2.3937 9.0008 1.4349 50 1 2.8973 3.8871 -2.1325 51 1 2.0832 1.5632 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033515807.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:18 Heat of formation + Delta-G solvation = 17.314073 kcal Electronic energy + Delta-G solvation = -29081.111370 eV Core-core repulsion = 25367.123488 eV Total energy + Delta-G solvation = -3713.987882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.44448 -39.13270 -37.54543 -35.10081 -34.24440 -32.67049 -32.01105 -30.84925 -29.23438 -28.64814 -27.86991 -26.44744 -24.94861 -24.22824 -22.80853 -22.61292 -21.03047 -20.53880 -20.15275 -18.52326 -17.19797 -16.78906 -16.34547 -15.68845 -15.47668 -15.05048 -14.83903 -14.53156 -14.32841 -14.00715 -13.86257 -13.72351 -13.35538 -13.18676 -13.12855 -12.89669 -12.67242 -12.35765 -12.09144 -11.93640 -11.87410 -11.74320 -11.60856 -11.47006 -11.39587 -11.21052 -11.06003 -10.82099 -10.80341 -10.75675 -10.71614 -10.34685 -10.14120 -10.04774 -9.77020 -9.35252 -8.77896 -8.70616 -8.46197 -8.16550 -6.90347 -5.77447 -3.13057 1.37470 1.52458 2.93888 3.36025 3.37660 3.42425 3.43938 3.86032 4.44828 4.58397 4.68760 4.75654 4.82192 5.05698 5.07451 5.16098 5.20731 5.22456 5.31372 5.36824 5.40785 5.43523 5.52727 5.55511 5.59179 5.65576 5.70344 5.74314 5.81501 5.85842 5.94256 5.98233 6.01038 6.03980 6.08146 6.12186 6.14716 6.19325 6.33694 6.42998 6.49946 6.59448 6.65429 6.71464 6.74174 6.94588 7.08326 7.34532 7.48254 7.70184 7.87307 8.17625 8.51794 9.13749 9.74908 10.39565 11.32776 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018837 B = 0.002765 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.112039 B =10123.577238 C =10743.859676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.087 4.087 4 C -0.123 4.123 5 C -0.108 4.108 6 C -0.067 4.067 7 C -0.074 4.074 8 H 0.105 0.895 9 C -0.148 4.148 10 C 0.518 3.482 11 O -0.545 6.545 12 N -0.591 5.591 13 C 0.083 3.917 14 C 0.094 3.906 15 H 0.101 0.899 16 C -0.143 4.143 17 C 0.125 3.875 18 N -0.603 5.603 19 C -0.228 4.228 20 H 0.078 0.922 21 C -0.007 4.007 22 N -0.921 5.921 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.281 1.281 26 H -0.291 1.291 27 C 0.166 3.834 28 C -0.076 4.076 29 C -0.123 4.123 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.045 0.955 41 H 0.061 0.939 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.027 0.973 46 H 0.039 0.961 47 H 0.253 0.747 48 H 0.070 0.930 49 H 0.039 0.961 50 H 0.119 0.881 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.206 -17.393 -7.337 19.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.087 4.087 4 C -0.141 4.141 5 C -0.126 4.126 6 C -0.068 4.068 7 C -0.095 4.095 8 H 0.123 0.877 9 C -0.205 4.205 10 C 0.305 3.695 11 O -0.423 6.423 12 N -0.322 5.322 13 C -0.060 4.060 14 C -0.010 4.010 15 H 0.119 0.881 16 C -0.182 4.182 17 C -0.001 4.001 18 N -0.330 5.330 19 C -0.357 4.357 20 H 0.096 0.904 21 C -0.204 4.204 22 N -0.569 5.569 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.207 1.207 26 H -0.217 1.217 27 C 0.041 3.959 28 C -0.094 4.094 29 C -0.141 4.141 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.115 0.885 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.044 0.956 46 H 0.058 0.942 47 H 0.063 0.937 48 H 0.088 0.912 49 H 0.057 0.943 50 H 0.137 0.863 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.651 -17.554 -7.440 19.136 hybrid contribution -0.334 1.007 0.634 1.236 sum 1.318 -16.546 -6.805 17.939 Atomic orbital electron populations 1.21751 0.94846 1.01405 1.02444 1.20514 0.96134 0.92881 1.02479 1.19844 0.99427 0.96130 0.93312 1.20896 1.00944 0.94922 0.97338 1.21038 0.99308 0.94877 0.97412 1.19345 0.99948 0.93960 0.93528 1.20288 0.95430 0.91922 1.01852 0.87733 1.22004 0.94447 1.03441 1.00576 1.20376 0.86015 0.82429 0.80644 1.90661 1.33835 1.74070 1.43781 1.47821 1.21970 1.05053 1.57369 1.21815 0.90622 0.96100 0.97442 1.22961 0.86020 0.96806 0.95235 0.88128 1.23122 0.99473 0.97291 0.98317 1.21825 0.95752 0.94706 0.87809 1.44487 1.81596 1.02968 1.03981 1.19044 1.40795 0.85726 0.90091 0.90397 1.24796 1.01995 0.97328 0.96240 1.69906 1.54829 1.24872 1.07246 0.86108 0.78083 0.82179 0.79431 1.21642 1.20668 1.21681 1.21610 1.00808 0.82119 0.91399 1.20894 0.97079 0.93732 0.97682 1.20939 1.00949 0.94983 0.97275 0.92621 0.92518 0.92497 0.91288 0.91268 0.86368 0.86002 0.92076 0.90520 0.91312 0.93648 0.92037 0.88517 0.90439 0.91764 0.95551 0.94227 0.93705 0.91182 0.94277 0.86286 0.86516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.89 37.16 0.37 -0.87 16 2 C -0.08 -0.72 6.06 -27.88 -0.17 -0.89 16 3 C -0.09 -0.99 5.13 -104.62 -0.54 -1.53 16 4 C -0.12 -1.44 9.70 -39.58 -0.38 -1.82 16 5 C -0.11 -1.39 9.67 -39.58 -0.38 -1.78 16 6 C -0.07 -0.93 4.49 -104.62 -0.47 -1.40 16 7 C -0.07 -1.02 2.06 -92.92 -0.19 -1.21 16 8 H 0.10 1.41 7.30 -51.93 -0.38 1.03 16 9 C -0.15 -1.67 8.51 37.16 0.32 -1.35 16 10 C 0.52 8.78 6.89 -10.98 -0.08 8.71 16 11 O -0.55 -10.70 14.49 5.56 0.08 -10.62 16 12 N -0.59 -10.13 2.83 -171.84 -0.49 -10.61 16 13 C 0.08 1.44 8.47 59.85 0.51 1.95 16 14 C 0.09 1.58 2.65 -66.10 -0.18 1.41 16 15 H 0.10 1.49 4.12 -51.93 -0.21 1.27 16 16 C -0.14 -2.26 6.42 -24.47 -0.16 -2.42 16 17 C 0.12 2.38 6.36 -2.41 -0.02 2.37 16 18 N -0.60 -14.30 2.94 -169.94 -0.50 -14.80 16 19 C -0.23 -6.06 10.27 -15.06 -0.15 -6.22 16 20 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 21 C -0.01 -0.20 5.46 -17.43 -0.10 -0.29 16 22 N -0.92 -25.93 10.41 55.49 0.58 -25.35 16 23 Si 0.91 21.57 29.56 -169.99 -5.02 16.55 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 C 0.17 3.71 4.38 -3.07 -0.01 3.69 16 28 C -0.08 -1.04 7.89 -39.58 -0.31 -1.35 16 29 C -0.12 -1.50 9.70 -39.58 -0.38 -1.88 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 34 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 35 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.12 1.40 7.95 -52.49 -0.42 0.99 16 37 H 0.06 0.68 7.58 -51.93 -0.39 0.29 16 38 H 0.08 0.85 5.24 -51.93 -0.27 0.58 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.04 0.72 8.06 -51.93 -0.42 0.30 16 41 H 0.06 1.10 7.63 -51.93 -0.40 0.71 16 42 H 0.10 1.88 5.02 -51.93 -0.26 1.62 16 43 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.03 0.50 5.63 -51.93 -0.29 0.21 16 46 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 48 H 0.07 1.75 6.96 -51.93 -0.36 1.38 16 49 H 0.04 1.00 7.76 -51.93 -0.40 0.59 16 50 H 0.12 1.64 7.35 -52.48 -0.39 1.25 16 51 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 391.60 15.07 5.90 5.90 Total: -1.00 -30.67 391.60 -10.16 -40.84 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -8.39 Total: 2.97 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -2.33 Total: -4.87 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.41 Total: -50.76 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.67 -10.16 -40.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033515807.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.150 kcal (2) G-P(sol) polarization free energy of solvation -30.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds