Wall clock time and date at job start Tue Mar 31 2020 16:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47339 * 2 1 4 4 C 1.38238 * 120.00305 * 89.99705 * 3 2 1 5 5 C 1.38233 * 120.00025 * 180.02562 * 4 3 2 6 6 C 1.38232 * 120.00150 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.00146 * 179.97438 * 6 5 4 8 8 H 1.09010 * 109.46912 * 359.97438 * 7 6 5 9 9 C 1.52994 * 109.47093 * 240.00078 * 7 6 5 10 10 C 1.50698 * 109.47460 * 119.99389 * 7 6 5 11 11 O 1.21284 * 119.99534 * 0.02562 * 10 7 6 12 12 N 1.34770 * 120.00232 * 179.97438 * 10 7 6 13 13 C 1.46505 * 119.99917 * 0.02562 * 12 10 7 14 14 C 1.46503 * 120.00345 * 180.02562 * 12 10 7 15 15 H 1.08998 * 110.63626 * 358.31724 * 14 12 10 16 16 C 1.55148 * 110.87374 * 235.06843 * 14 12 10 17 17 C 1.55133 * 101.48378 * 205.89678 * 16 14 12 18 18 N 1.47426 * 104.72214 * 37.29794 * 17 16 14 19 19 C 1.36939 * 125.64656 * 155.82094 * 18 17 16 20 20 H 1.07999 * 119.99517 * 199.40367 * 19 18 17 21 21 C 1.38809 * 120.00347 * 19.40725 * 19 18 17 22 22 N 1.31623 * 119.99893 * 28.44314 * 21 19 18 23 23 Si 1.86793 * 119.99903 * 208.45078 * 21 19 18 24 24 H 1.48503 * 109.47100 * 179.97438 * 23 21 19 25 25 H 1.48503 * 109.47335 * 299.99887 * 23 21 19 26 26 H 1.48502 * 109.47227 * 59.99961 * 23 21 19 27 27 C 1.47022 * 108.69976 * 335.54833 * 18 17 16 28 28 C 1.38232 * 120.00213 * 0.24903 * 6 5 4 29 29 C 1.38238 * 119.99795 * 359.50003 * 28 6 5 30 30 H 1.08997 * 109.46698 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46724 * 300.00424 * 1 2 3 32 32 H 1.09002 * 109.46990 * 59.99886 * 1 2 3 33 33 H 1.08994 * 109.47343 * 240.00190 * 2 1 3 34 34 H 1.09001 * 109.47515 * 119.99328 * 2 1 3 35 35 H 1.08000 * 119.99943 * 0.02562 * 4 3 2 36 36 H 1.08001 * 119.99668 * 179.97438 * 5 4 3 37 37 H 1.08993 * 109.47545 * 59.99571 * 9 7 6 38 38 H 1.09005 * 109.47079 * 180.02562 * 9 7 6 39 39 H 1.09002 * 109.47154 * 299.99539 * 9 7 6 40 40 H 1.09003 * 109.46788 * 269.99854 * 13 12 10 41 41 H 1.08991 * 109.47177 * 29.99258 * 13 12 10 42 42 H 1.09001 * 109.47125 * 150.00028 * 13 12 10 43 43 H 1.09003 * 111.00636 * 324.13157 * 16 14 12 44 44 H 1.08995 * 111.00855 * 87.99089 * 16 14 12 45 45 H 1.09003 * 110.49732 * 278.44913 * 17 16 14 46 46 H 1.09002 * 110.34263 * 156.06155 * 17 16 14 47 47 H 0.96998 * 120.00170 * 5.66170 * 22 21 19 48 48 H 1.09002 * 109.87831 * 120.70897 * 27 18 17 49 49 H 1.08997 * 109.88402 * 241.71642 * 27 18 17 50 50 H 1.07999 * 120.00142 * 179.72536 * 28 6 5 51 51 H 1.07997 * 120.00177 * 180.22598 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0726 1.1971 5 6 2.7231 3.3760 1.1971 6 6 2.9525 4.0279 -0.0001 7 6 3.4538 5.4491 -0.0001 8 1 3.5747 5.7918 1.0276 9 6 2.4451 6.3457 -0.7209 10 6 4.7811 5.5137 -0.7109 11 8 5.2715 4.5050 -1.1724 12 7 5.4227 6.6924 -0.8346 13 6 4.8300 7.9110 -0.2776 14 6 6.7127 6.7553 -1.5261 15 1 7.0231 5.7623 -1.8512 16 6 7.7949 7.3993 -0.6198 17 6 8.7784 7.9733 -1.6733 18 7 7.9156 8.4608 -2.7648 19 6 8.2468 9.4334 -3.6702 20 1 7.4715 9.9429 -4.2231 21 6 9.5789 9.7642 -3.8773 22 7 10.5182 8.8619 -3.6878 23 14 10.0383 11.4900 -4.4248 24 1 11.5127 11.5861 -4.5736 25 1 9.3886 11.7858 -5.7270 26 1 9.5790 12.4705 -3.4084 27 6 6.6432 7.7253 -2.7243 28 6 2.7168 3.3782 -1.1972 29 6 2.2614 2.0730 -1.1972 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 2.0831 1.5634 2.1325 36 1 2.9027 3.8853 2.1324 37 1 1.4852 6.2990 -0.2068 38 1 2.8079 7.3736 -0.7213 39 1 2.3239 6.0032 -1.7486 40 1 4.1979 8.3839 -1.0292 41 1 4.2285 7.6564 0.5949 42 1 5.6227 8.5992 0.0157 43 1 7.3686 8.1925 -0.0055 44 1 8.2838 6.6475 -0.0004 45 1 9.4461 7.1925 -2.0374 46 1 9.3524 8.7961 -1.2472 47 1 10.2760 7.9451 -3.4837 48 1 5.8162 8.4224 -2.5894 49 1 6.5089 7.1657 -3.6500 50 1 2.8918 3.8891 -2.1325 51 1 2.0807 1.5641 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033515812.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:27 Heat of formation + Delta-G solvation = 9.193133 kcal Electronic energy + Delta-G solvation = -28484.783535 eV Core-core repulsion = 24770.443502 eV Total energy + Delta-G solvation = -3714.340033 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.60211 -39.26654 -37.54230 -35.30204 -34.98454 -32.99622 -31.95426 -31.01047 -29.24327 -28.73101 -27.63243 -26.84080 -24.95639 -24.30534 -23.18463 -22.83271 -21.18062 -20.30919 -20.04382 -18.82503 -17.52939 -17.24099 -16.53390 -16.07425 -15.57843 -15.18218 -15.09615 -14.40943 -14.28566 -14.04108 -13.95625 -13.82513 -13.72481 -13.31114 -13.21707 -13.13445 -13.04099 -12.72185 -12.57983 -12.28550 -12.21944 -11.88293 -11.81547 -11.60059 -11.47316 -11.37782 -11.03945 -10.92003 -10.86043 -10.74559 -10.70123 -10.55493 -10.08550 -10.02263 -9.58103 -9.53987 -8.94436 -8.61441 -8.46301 -8.36841 -6.93951 -6.11093 -3.17499 1.21866 1.36654 2.70586 3.06560 3.49319 3.52835 3.68714 3.71178 4.37771 4.48826 4.58833 4.59307 4.68144 4.83393 4.88924 4.99200 5.05837 5.10177 5.14577 5.20743 5.25829 5.28248 5.35173 5.36292 5.40806 5.46709 5.47882 5.57764 5.60995 5.61615 5.65497 5.70946 5.79372 5.85315 5.93737 5.96859 5.99550 6.01958 6.13220 6.32703 6.34902 6.46560 6.51789 6.54353 6.61691 6.86426 6.91296 6.93413 7.01847 7.53838 7.80140 8.28290 8.48029 9.00786 9.80058 10.35879 11.20906 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.029191 B = 0.002240 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.980973 B =12495.023122 C =12689.047272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.085 4.085 4 C -0.122 4.122 5 C -0.110 4.110 6 C -0.068 4.068 7 C -0.069 4.069 8 H 0.102 0.898 9 C -0.154 4.154 10 C 0.517 3.483 11 O -0.533 6.533 12 N -0.600 5.600 13 C 0.073 3.927 14 C 0.127 3.873 15 H 0.104 0.896 16 C -0.145 4.145 17 C 0.146 3.854 18 N -0.600 5.600 19 C -0.338 4.338 20 H 0.063 0.937 21 C -0.025 4.025 22 N -0.913 5.913 23 Si 1.066 2.934 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.294 1.294 27 C 0.129 3.871 28 C -0.079 4.079 29 C -0.119 4.119 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.029 0.971 46 H 0.053 0.947 47 H 0.269 0.731 48 H 0.029 0.971 49 H 0.025 0.975 50 H 0.119 0.881 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.760 -11.196 12.173 26.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.085 4.085 4 C -0.140 4.140 5 C -0.128 4.128 6 C -0.068 4.068 7 C -0.090 4.090 8 H 0.120 0.880 9 C -0.211 4.211 10 C 0.304 3.696 11 O -0.410 6.410 12 N -0.333 5.333 13 C -0.070 4.070 14 C 0.024 3.976 15 H 0.122 0.878 16 C -0.184 4.184 17 C 0.020 3.980 18 N -0.327 5.327 19 C -0.466 4.466 20 H 0.081 0.919 21 C -0.227 4.227 22 N -0.553 5.553 23 Si 0.895 3.105 24 H -0.211 1.211 25 H -0.220 1.220 26 H -0.221 1.221 27 C 0.003 3.997 28 C -0.097 4.097 29 C -0.137 4.137 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.047 0.953 46 H 0.071 0.929 47 H 0.080 0.920 48 H 0.047 0.953 49 H 0.043 0.957 50 H 0.137 0.863 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.198 -10.640 11.507 24.783 hybrid contribution -1.246 -0.915 0.264 1.569 sum -20.444 -11.556 11.771 26.269 Atomic orbital electron populations 1.21743 0.94817 1.01550 1.02186 1.20535 0.96067 0.92860 1.02777 1.19863 0.99292 0.96069 0.93258 1.20893 1.00953 0.94767 0.97371 1.20950 0.99857 0.94916 0.97090 1.19291 0.99590 0.94348 0.93601 1.20260 0.93268 0.94201 1.01271 0.88038 1.22068 0.98284 0.99836 1.00891 1.20460 0.86138 0.83005 0.80009 1.90710 1.67517 1.34127 1.48619 1.47794 1.21532 1.07627 1.56303 1.21962 0.99234 0.87654 0.98178 1.22181 0.81574 1.00946 0.92886 0.87828 1.23222 0.97312 0.99745 0.98094 1.21556 0.92289 0.97106 0.87079 1.44511 1.13208 1.43066 1.31942 1.19694 0.93877 1.12269 1.20734 0.91888 1.25807 0.91846 1.05378 0.99693 1.70780 1.35134 1.03320 1.46082 0.83514 0.75989 0.75175 0.75796 1.21071 1.21983 1.22093 1.21561 0.91048 0.92552 0.94589 1.20900 0.96645 0.94552 0.97641 1.20972 1.00466 0.94812 0.97450 0.92523 0.92620 0.92554 0.91096 0.91170 0.86341 0.86281 0.91383 0.90431 0.91881 0.92050 0.91163 0.90307 0.91186 0.91630 0.95321 0.92898 0.91984 0.95329 0.95726 0.86330 0.86309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 37.16 0.37 -0.60 16 2 C -0.09 -0.66 6.06 -27.88 -0.17 -0.83 16 3 C -0.08 -0.87 5.13 -104.62 -0.54 -1.40 16 4 C -0.12 -1.22 9.70 -39.58 -0.38 -1.60 16 5 C -0.11 -1.17 9.67 -39.59 -0.38 -1.55 16 6 C -0.07 -0.81 4.39 -104.63 -0.46 -1.27 16 7 C -0.07 -0.76 2.10 -92.93 -0.19 -0.95 16 8 H 0.10 0.91 7.14 -51.92 -0.37 0.54 16 9 C -0.15 -1.39 8.64 37.15 0.32 -1.07 16 10 C 0.52 7.77 6.95 -10.99 -0.08 7.69 16 11 O -0.53 -10.09 14.50 5.55 0.08 -10.01 16 12 N -0.60 -8.91 2.89 -171.84 -0.50 -9.41 16 13 C 0.07 0.82 7.69 59.85 0.46 1.28 16 14 C 0.13 2.35 3.35 -66.10 -0.22 2.13 16 15 H 0.10 2.11 6.99 -51.93 -0.36 1.75 16 16 C -0.14 -2.63 6.63 -24.47 -0.16 -2.79 16 17 C 0.15 3.40 5.39 -2.41 -0.01 3.39 16 18 N -0.60 -15.34 3.26 -169.93 -0.55 -15.90 16 19 C -0.34 -9.60 10.00 -15.06 -0.15 -9.75 16 20 H 0.06 1.79 7.97 -52.49 -0.42 1.37 16 21 C -0.02 -0.72 5.10 -17.43 -0.09 -0.81 16 22 N -0.91 -27.81 13.01 55.49 0.72 -27.09 16 23 Si 1.07 25.35 30.00 -169.99 -5.10 20.25 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 C 0.13 2.78 6.88 -3.07 -0.02 2.76 16 28 C -0.08 -1.00 7.94 -39.58 -0.31 -1.31 16 29 C -0.12 -1.34 9.70 -39.58 -0.38 -1.73 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 34 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 35 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.12 1.01 7.95 -52.49 -0.42 0.59 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.64 4.53 -51.93 -0.24 0.41 16 39 H 0.06 0.63 7.37 -51.93 -0.38 0.25 16 40 H 0.06 0.66 6.70 -51.93 -0.35 0.31 16 41 H 0.07 0.58 6.01 -51.93 -0.31 0.27 16 42 H 0.08 0.95 6.09 -51.93 -0.32 0.64 16 43 H 0.07 1.17 6.11 -51.93 -0.32 0.85 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.03 0.72 6.81 -51.93 -0.35 0.37 16 46 H 0.05 1.32 8.08 -51.93 -0.42 0.90 16 47 H 0.27 8.27 6.19 -40.82 -0.25 8.01 16 48 H 0.03 0.59 6.94 -51.93 -0.36 0.23 16 49 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.12 1.55 7.52 -52.49 -0.39 1.15 16 51 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 393.72 15.07 5.93 5.93 Total: -1.00 -33.81 393.72 -10.10 -43.92 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -8.28 Total: 0.74 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -2.41 Total: -8.43 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: -0.33 Total: -52.39 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.01 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.10 Total: 20.25 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.81 -10.10 -43.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033515812.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.110 kcal (2) G-P(sol) polarization free energy of solvation -33.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds