Wall clock time and date at job start Tue Mar 31 2020 16:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47339 * 2 1 4 4 C 1.38238 * 120.00305 * 89.99705 * 3 2 1 5 5 C 1.38233 * 120.00025 * 180.02562 * 4 3 2 6 6 C 1.38232 * 120.00150 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.00146 * 179.97438 * 6 5 4 8 8 H 1.09010 * 109.46912 * 359.97438 * 7 6 5 9 9 C 1.52994 * 109.47093 * 240.00078 * 7 6 5 10 10 C 1.50698 * 109.47460 * 119.99389 * 7 6 5 11 11 O 1.21284 * 119.99534 * 0.02562 * 10 7 6 12 12 N 1.34770 * 120.00232 * 179.97438 * 10 7 6 13 13 C 1.46505 * 119.99917 * 0.02562 * 12 10 7 14 14 C 1.46503 * 120.00345 * 180.02562 * 12 10 7 15 15 H 1.08998 * 110.63626 * 358.31724 * 14 12 10 16 16 C 1.55148 * 110.87374 * 235.06843 * 14 12 10 17 17 C 1.55133 * 101.48378 * 205.89678 * 16 14 12 18 18 N 1.47426 * 104.72214 * 37.29794 * 17 16 14 19 19 C 1.36939 * 125.64656 * 155.82094 * 18 17 16 20 20 H 1.07999 * 119.99517 * 199.40367 * 19 18 17 21 21 C 1.38809 * 120.00347 * 19.40725 * 19 18 17 22 22 N 1.31623 * 119.99893 * 28.44314 * 21 19 18 23 23 Si 1.86793 * 119.99903 * 208.45078 * 21 19 18 24 24 H 1.48503 * 109.47100 * 179.97438 * 23 21 19 25 25 H 1.48503 * 109.47335 * 299.99887 * 23 21 19 26 26 H 1.48502 * 109.47227 * 59.99961 * 23 21 19 27 27 C 1.47022 * 108.69976 * 335.54833 * 18 17 16 28 28 C 1.38232 * 120.00213 * 0.24903 * 6 5 4 29 29 C 1.38238 * 119.99795 * 359.50003 * 28 6 5 30 30 H 1.08997 * 109.46698 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46724 * 300.00424 * 1 2 3 32 32 H 1.09002 * 109.46990 * 59.99886 * 1 2 3 33 33 H 1.08994 * 109.47343 * 240.00190 * 2 1 3 34 34 H 1.09001 * 109.47515 * 119.99328 * 2 1 3 35 35 H 1.08000 * 119.99943 * 0.02562 * 4 3 2 36 36 H 1.08001 * 119.99668 * 179.97438 * 5 4 3 37 37 H 1.08993 * 109.47545 * 59.99571 * 9 7 6 38 38 H 1.09005 * 109.47079 * 180.02562 * 9 7 6 39 39 H 1.09002 * 109.47154 * 299.99539 * 9 7 6 40 40 H 1.09003 * 109.46788 * 269.99854 * 13 12 10 41 41 H 1.08991 * 109.47177 * 29.99258 * 13 12 10 42 42 H 1.09001 * 109.47125 * 150.00028 * 13 12 10 43 43 H 1.09003 * 111.00636 * 324.13157 * 16 14 12 44 44 H 1.08995 * 111.00855 * 87.99089 * 16 14 12 45 45 H 1.09003 * 110.49732 * 278.44913 * 17 16 14 46 46 H 1.09002 * 110.34263 * 156.06155 * 17 16 14 47 47 H 0.96998 * 120.00170 * 5.66170 * 22 21 19 48 48 H 1.09002 * 109.87831 * 120.70897 * 27 18 17 49 49 H 1.08997 * 109.88402 * 241.71642 * 27 18 17 50 50 H 1.07999 * 120.00142 * 179.72536 * 28 6 5 51 51 H 1.07997 * 120.00177 * 180.22598 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0726 1.1971 5 6 2.7231 3.3760 1.1971 6 6 2.9525 4.0279 -0.0001 7 6 3.4538 5.4491 -0.0001 8 1 3.5747 5.7918 1.0276 9 6 2.4451 6.3457 -0.7209 10 6 4.7811 5.5137 -0.7109 11 8 5.2715 4.5050 -1.1724 12 7 5.4227 6.6924 -0.8346 13 6 4.8300 7.9110 -0.2776 14 6 6.7127 6.7553 -1.5261 15 1 7.0231 5.7623 -1.8512 16 6 7.7949 7.3993 -0.6198 17 6 8.7784 7.9733 -1.6733 18 7 7.9156 8.4608 -2.7648 19 6 8.2468 9.4334 -3.6702 20 1 7.4715 9.9429 -4.2231 21 6 9.5789 9.7642 -3.8773 22 7 10.5182 8.8619 -3.6878 23 14 10.0383 11.4900 -4.4248 24 1 11.5127 11.5861 -4.5736 25 1 9.3886 11.7858 -5.7270 26 1 9.5790 12.4705 -3.4084 27 6 6.6432 7.7253 -2.7243 28 6 2.7168 3.3782 -1.1972 29 6 2.2614 2.0730 -1.1972 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 2.0831 1.5634 2.1325 36 1 2.9027 3.8853 2.1324 37 1 1.4852 6.2990 -0.2068 38 1 2.8079 7.3736 -0.7213 39 1 2.3239 6.0032 -1.7486 40 1 4.1979 8.3839 -1.0292 41 1 4.2285 7.6564 0.5949 42 1 5.6227 8.5992 0.0157 43 1 7.3686 8.1925 -0.0055 44 1 8.2838 6.6475 -0.0004 45 1 9.4461 7.1925 -2.0374 46 1 9.3524 8.7961 -1.2472 47 1 10.2760 7.9451 -3.4837 48 1 5.8162 8.4224 -2.5894 49 1 6.5089 7.1657 -3.6500 50 1 2.8918 3.8891 -2.1325 51 1 2.0807 1.5641 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033515812.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:26 Heat of formation + Delta-G solvation = -9.151097 kcal Electronic energy + Delta-G solvation = -28485.579000 eV Core-core repulsion = 24770.443502 eV Total energy + Delta-G solvation = -3715.135498 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.70232 -40.27273 -39.10255 -36.51966 -36.07378 -34.40275 -33.25276 -31.81695 -31.04424 -29.75523 -28.99311 -27.96118 -26.41315 -25.62883 -24.10872 -23.66502 -22.28683 -22.13859 -21.16563 -20.05001 -19.60374 -18.38516 -17.57756 -17.10534 -16.56391 -16.32637 -16.18910 -15.97481 -15.75696 -15.36996 -15.17913 -14.88715 -14.66701 -14.58998 -14.48133 -14.18416 -14.03057 -13.92254 -13.52502 -13.41314 -13.35019 -12.97096 -12.75916 -12.65478 -12.63395 -12.54044 -12.50838 -12.41978 -12.12771 -12.02251 -11.90203 -11.73201 -11.64738 -11.62507 -11.59688 -10.78004 -10.53987 -9.77793 -9.69791 -9.41616 -9.07679 -8.37190 -5.41454 0.39950 0.54134 1.54790 1.57461 1.65332 1.84456 1.88783 2.63181 2.84959 3.14418 3.42108 3.52412 3.60766 3.73562 3.79335 3.90890 3.95160 4.07839 4.10619 4.13068 4.20825 4.26541 4.32801 4.38216 4.44898 4.51578 4.55531 4.60837 4.68112 4.71276 4.72226 4.77027 4.86913 4.87735 4.94397 4.96329 4.99682 5.05475 5.08465 5.15605 5.18671 5.21854 5.27036 5.37947 5.46325 5.53610 5.64573 5.70752 5.74217 6.13138 6.25684 6.38220 6.82758 7.11283 7.64378 8.22554 8.93225 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.029191 B = 0.002240 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.980973 B =12495.023122 C =12689.047272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.089 4.089 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.085 4.085 7 C -0.058 4.058 8 H 0.134 0.866 9 C -0.150 4.150 10 C 0.512 3.488 11 O -0.580 6.580 12 N -0.598 5.598 13 C 0.064 3.936 14 C 0.143 3.857 15 H 0.078 0.922 16 C -0.122 4.122 17 C 0.148 3.852 18 N -0.619 5.619 19 C -0.349 4.349 20 H 0.060 0.940 21 C -0.078 4.078 22 N -0.941 5.941 23 Si 1.121 2.879 24 H -0.292 1.292 25 H -0.275 1.275 26 H -0.275 1.275 27 C 0.131 3.869 28 C -0.101 4.101 29 C -0.136 4.136 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.044 0.956 40 H 0.070 0.930 41 H 0.111 0.889 42 H 0.074 0.926 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.001 0.999 46 H 0.032 0.968 47 H 0.252 0.748 48 H 0.046 0.954 49 H -0.001 1.001 50 H 0.100 0.900 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.086 -10.447 14.802 29.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 C -0.089 4.089 4 C -0.144 4.144 5 C -0.131 4.131 6 C -0.085 4.085 7 C -0.079 4.079 8 H 0.152 0.848 9 C -0.207 4.207 10 C 0.302 3.698 11 O -0.459 6.459 12 N -0.330 5.330 13 C -0.077 4.077 14 C 0.038 3.962 15 H 0.096 0.904 16 C -0.161 4.161 17 C 0.022 3.978 18 N -0.347 5.347 19 C -0.477 4.477 20 H 0.078 0.922 21 C -0.274 4.274 22 N -0.583 5.583 23 Si 0.944 3.056 24 H -0.218 1.218 25 H -0.201 1.201 26 H -0.201 1.201 27 C 0.005 3.995 28 C -0.119 4.119 29 C -0.154 4.154 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.161 0.839 36 H 0.163 0.837 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.129 0.871 42 H 0.093 0.907 43 H 0.113 0.887 44 H 0.102 0.898 45 H 0.019 0.981 46 H 0.050 0.950 47 H 0.063 0.937 48 H 0.064 0.936 49 H 0.017 0.983 50 H 0.118 0.882 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -21.584 -9.884 14.158 27.641 hybrid contribution -0.588 -1.246 -0.592 1.499 sum -22.172 -11.130 13.565 28.275 Atomic orbital electron populations 1.21715 0.93850 1.02408 1.01963 1.20587 0.96835 0.91428 1.03351 1.20178 0.98600 0.97167 0.92963 1.21257 1.00151 0.94822 0.98206 1.21282 0.99109 0.95212 0.97506 1.19473 1.00216 0.95037 0.93802 1.20299 0.90771 0.94405 1.02378 0.84838 1.22076 0.98841 0.99801 0.99945 1.21288 0.87118 0.82075 0.79315 1.90694 1.68877 1.35826 1.50550 1.47808 1.20161 1.09181 1.55813 1.22288 0.99555 0.86002 0.99843 1.21673 0.83908 0.98558 0.92091 0.90389 1.23069 0.95709 1.00552 0.96787 1.21464 0.92849 0.95595 0.87897 1.44782 1.14571 1.43196 1.32141 1.19987 0.94011 1.12743 1.20978 0.92180 1.27333 0.92055 1.08332 0.99724 1.70911 1.35696 1.02953 1.48739 0.82802 0.75330 0.70855 0.76639 1.21804 1.20052 1.20068 1.21620 0.89868 0.92964 0.95081 1.20927 0.98077 0.95364 0.97569 1.21148 1.01010 0.94712 0.98485 0.91136 0.92376 0.93237 0.91137 0.90004 0.83919 0.83710 0.89191 0.89190 0.93686 0.91191 0.87109 0.90687 0.88715 0.89789 0.98102 0.94998 0.93746 0.93623 0.98256 0.88201 0.85882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.89 71.98 0.71 -0.92 16 2 C -0.08 -1.19 6.06 29.85 0.18 -1.00 16 3 C -0.09 -1.72 5.13 -19.86 -0.10 -1.82 16 4 C -0.13 -2.24 9.70 22.27 0.22 -2.02 16 5 C -0.11 -2.11 9.67 22.27 0.22 -1.89 16 6 C -0.08 -1.91 4.39 -19.87 -0.09 -2.00 16 7 C -0.06 -1.13 2.10 -12.29 -0.03 -1.15 16 8 H 0.13 1.76 7.14 -2.38 -0.02 1.74 16 9 C -0.15 -2.33 8.64 71.98 0.62 -1.71 16 10 C 0.51 14.89 6.95 87.66 0.61 15.50 16 11 O -0.58 -22.42 14.50 -3.04 -0.04 -22.47 16 12 N -0.60 -16.83 2.89 -815.98 -2.35 -19.18 16 13 C 0.06 1.23 7.69 127.77 0.98 2.21 16 14 C 0.14 5.27 3.35 46.18 0.15 5.43 16 15 H 0.08 3.31 6.99 -2.39 -0.02 3.29 16 16 C -0.12 -4.36 6.63 32.06 0.21 -4.14 16 17 C 0.15 7.11 5.39 86.93 0.47 7.57 16 18 N -0.62 -32.47 3.26 -691.54 -2.26 -34.72 16 19 C -0.35 -20.17 10.00 84.03 0.84 -19.33 16 20 H 0.06 3.44 7.97 -2.91 -0.02 3.41 16 21 C -0.08 -4.57 5.10 84.86 0.43 -4.14 16 22 N -0.94 -59.20 13.01 21.65 0.28 -58.92 16 23 Si 1.12 51.32 30.00 68.60 2.06 53.38 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 27 C 0.13 5.74 6.88 86.73 0.60 6.33 16 28 C -0.10 -2.60 7.94 22.27 0.18 -2.42 16 29 C -0.14 -3.10 9.70 22.27 0.22 -2.88 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 0.98 8.09 -2.39 -0.02 0.96 16 34 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 35 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 36 H 0.15 1.86 7.95 -2.91 -0.02 1.84 16 37 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.09 1.16 4.53 -2.38 -0.01 1.15 16 39 H 0.04 0.87 7.37 -2.39 -0.02 0.85 16 40 H 0.07 1.26 6.70 -2.39 -0.02 1.24 16 41 H 0.11 1.25 6.01 -2.39 -0.01 1.24 16 42 H 0.07 1.54 6.09 -2.39 -0.01 1.53 16 43 H 0.09 2.94 6.11 -2.39 -0.01 2.92 16 44 H 0.08 2.71 8.14 -2.39 -0.02 2.70 16 45 H 0.00 0.06 6.81 -2.39 -0.02 0.05 16 46 H 0.03 1.64 8.08 -2.39 -0.02 1.62 16 47 H 0.25 16.32 6.19 -92.71 -0.57 15.75 16 48 H 0.05 1.85 6.94 -2.39 -0.02 1.84 16 49 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 50 H 0.10 2.82 7.52 -2.91 -0.02 2.80 16 51 H 0.12 2.52 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -77.46 393.72 5.21 -72.25 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 1.10 Total: 18.05 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 6.42 Total: -8.39 kcal Atomic # 7 Polarization: -108.49 SS G_CDS: -4.33 Total: -112.82 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.04 Total: -22.47 kcal Atomic # 14 Polarization: 51.32 SS G_CDS: 2.06 Total: 53.38 kcal Total: -77.46 5.21 -72.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033515812.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.095 kcal (2) G-P(sol) polarization free energy of solvation -77.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds