Wall clock time and date at job start Tue Mar 31 2020 16:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.47150 * 2 1 4 4 C 1.38230 * 119.99779 * 90.00193 * 3 2 1 5 5 C 1.38237 * 119.99748 * 180.02562 * 4 3 2 6 6 C 1.38230 * 119.99893 * 359.94962 * 5 4 3 7 7 C 1.50703 * 119.99862 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.46873 * 0.02562 * 7 6 5 9 9 C 1.52998 * 109.47518 * 240.00377 * 7 6 5 10 10 C 1.50704 * 109.46860 * 119.99932 * 7 6 5 11 11 O 1.21283 * 120.00114 * 0.02562 * 10 7 6 12 12 N 1.34777 * 120.00039 * 179.97438 * 10 7 6 13 13 C 1.46508 * 119.99831 * 0.02562 * 12 10 7 14 14 C 1.46498 * 120.00235 * 180.02562 * 12 10 7 15 15 H 1.09000 * 110.63889 * 1.69449 * 14 12 10 16 16 C 1.55154 * 110.87046 * 124.93722 * 14 12 10 17 17 C 1.54909 * 101.58178 * 82.93566 * 16 14 12 18 18 N 1.47430 * 104.83284 * 37.00613 * 17 16 14 19 19 C 1.36936 * 125.64864 * 156.13241 * 18 17 16 20 20 H 1.08000 * 119.99587 * 153.73986 * 19 18 17 21 21 C 1.38810 * 120.00327 * 333.75312 * 19 18 17 22 22 N 1.31619 * 120.00614 * 153.67852 * 21 19 18 23 23 Si 1.86803 * 119.99599 * 333.67155 * 21 19 18 24 24 H 1.48502 * 109.46929 * 95.11626 * 23 21 19 25 25 H 1.48503 * 109.47197 * 215.11702 * 23 21 19 26 26 H 1.48503 * 109.47321 * 335.12130 * 23 21 19 27 27 C 1.47023 * 108.70236 * 335.87510 * 18 17 16 28 28 C 1.38238 * 120.00210 * 0.27807 * 6 5 4 29 29 C 1.38227 * 119.99576 * 359.51760 * 28 6 5 30 30 H 1.08997 * 109.46823 * 60.00256 * 1 2 3 31 31 H 1.09002 * 109.47302 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47122 * 299.99892 * 1 2 3 33 33 H 1.09006 * 109.46861 * 239.99673 * 2 1 3 34 34 H 1.09003 * 109.46991 * 120.00146 * 2 1 3 35 35 H 1.08004 * 120.00336 * 359.97438 * 4 3 2 36 36 H 1.08001 * 119.99406 * 179.97438 * 5 4 3 37 37 H 1.08995 * 109.47019 * 180.02562 * 9 7 6 38 38 H 1.09008 * 109.46735 * 300.00312 * 9 7 6 39 39 H 1.08997 * 109.47248 * 59.99596 * 9 7 6 40 40 H 1.09000 * 109.46752 * 269.99833 * 13 12 10 41 41 H 1.09000 * 109.46900 * 29.99245 * 13 12 10 42 42 H 1.08997 * 109.46825 * 149.99866 * 13 12 10 43 43 H 1.08998 * 111.00570 * 201.00573 * 16 14 12 44 44 H 1.08996 * 111.00544 * 324.82264 * 16 14 12 45 45 H 1.09006 * 110.36545 * 278.16953 * 17 16 14 46 46 H 1.08995 * 110.36799 * 155.84512 * 17 16 14 47 47 H 0.96993 * 119.99803 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.88501 * 120.47126 * 27 18 17 49 49 H 1.08996 * 109.87857 * 241.64180 * 27 18 17 50 50 H 1.07997 * 119.99949 * 179.72129 * 28 6 5 51 51 H 1.08009 * 120.00041 * 180.25007 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7231 3.3759 1.1971 6 6 2.9539 4.0273 0.0000 7 6 3.4563 5.4482 0.0000 8 1 3.5774 5.7906 1.0277 9 6 2.4488 6.3454 -0.7216 10 6 4.7841 5.5114 -0.7099 11 8 5.2740 4.5023 -1.1709 12 7 5.4267 6.6897 -0.8335 13 6 4.8347 7.9088 -0.2771 14 6 6.7173 6.7513 -1.5241 15 1 6.9987 5.7680 -1.9009 16 6 6.6787 7.7902 -2.6758 17 6 6.9517 9.1105 -1.9130 18 7 7.9309 8.7493 -0.8717 19 6 8.8040 9.6114 -0.2638 20 1 9.1684 9.3989 0.7304 21 6 9.2205 10.7586 -0.9252 22 7 9.6040 11.8127 -0.2367 23 14 9.2368 10.8061 -2.7925 24 1 7.9731 11.4122 -3.2833 25 1 10.3891 11.6196 -3.2570 26 1 9.3611 9.4241 -3.3218 27 6 7.8104 7.3114 -0.5897 28 6 2.7190 3.3773 -1.1972 29 6 2.2628 2.0725 -1.1971 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.0824 1.5634 2.1325 36 1 2.9027 3.8851 2.1325 37 1 2.8124 7.3729 -0.7220 38 1 2.3280 6.0027 -1.7493 39 1 1.4884 6.2996 -0.2082 40 1 4.2034 8.3821 -1.0292 41 1 4.2324 7.6548 0.5952 42 1 5.6277 8.5965 0.0166 43 1 7.4626 7.5922 -3.4069 44 1 5.6987 7.8090 -3.1524 45 1 6.0337 9.4824 -1.4579 46 1 7.3720 9.8576 -2.5862 47 1 9.8954 12.6141 -0.6990 48 1 8.7593 6.8137 -0.7893 49 1 7.5218 7.1607 0.4505 50 1 2.8951 3.8878 -2.1324 51 1 2.0831 1.5632 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033515814.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:31 Heat of formation + Delta-G solvation = 23.146058 kcal Electronic energy + Delta-G solvation = -28818.040638 eV Core-core repulsion = 25104.305650 eV Total energy + Delta-G solvation = -3713.734989 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.62557 -39.34188 -37.73983 -35.26735 -34.65905 -32.90905 -31.98215 -31.00038 -29.75946 -28.82749 -28.25604 -26.66216 -25.07665 -24.17502 -23.15613 -22.81106 -21.33975 -20.71550 -20.04181 -18.73166 -17.27731 -17.11878 -16.42407 -16.05212 -15.56264 -15.47731 -15.17760 -15.04821 -14.20915 -14.03934 -13.97575 -13.76174 -13.48691 -13.40607 -13.20235 -13.10639 -12.87100 -12.69246 -12.46797 -12.43975 -12.08448 -11.91354 -11.79094 -11.58701 -11.54752 -11.38034 -11.25133 -11.19349 -11.07089 -10.91376 -10.86114 -10.67564 -10.43783 -9.89027 -9.54113 -9.43381 -8.93272 -8.63051 -8.59017 -8.36282 -7.01598 -6.03837 -3.33497 1.23368 1.37759 2.73470 3.11718 3.28609 3.45239 3.49678 3.70517 4.41143 4.49955 4.52904 4.60581 4.69287 4.86580 4.91039 4.94470 5.03266 5.07709 5.10645 5.12841 5.25895 5.29457 5.35769 5.37507 5.40547 5.42046 5.50814 5.58204 5.59626 5.61570 5.69110 5.72560 5.85477 5.88384 5.91996 5.95622 6.01225 6.02068 6.08283 6.24171 6.32971 6.34584 6.50716 6.52376 6.56125 6.57360 6.74689 6.88490 6.94119 7.57794 7.73923 8.26686 8.30882 8.80311 9.63467 10.16474 11.12353 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.032882 B = 0.002421 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.330440 B =11563.323413 C =11668.421503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.121 4.121 5 C -0.110 4.110 6 C -0.066 4.066 7 C -0.070 4.070 8 H 0.103 0.897 9 C -0.153 4.153 10 C 0.518 3.482 11 O -0.539 6.539 12 N -0.595 5.595 13 C 0.064 3.936 14 C 0.127 3.873 15 H 0.105 0.895 16 C -0.145 4.145 17 C 0.114 3.886 18 N -0.607 5.607 19 C -0.247 4.247 20 H 0.087 0.913 21 C 0.030 3.970 22 N -0.898 5.898 23 Si 0.878 3.122 24 H -0.287 1.287 25 H -0.302 1.302 26 H -0.273 1.273 27 C 0.124 3.876 28 C -0.080 4.080 29 C -0.120 4.120 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.100 0.900 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.039 0.961 46 H 0.042 0.958 47 H 0.264 0.736 48 H 0.041 0.959 49 H 0.037 0.963 50 H 0.118 0.882 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.972 -17.643 0.050 26.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.086 4.086 4 C -0.139 4.139 5 C -0.128 4.128 6 C -0.067 4.067 7 C -0.091 4.091 8 H 0.121 0.879 9 C -0.210 4.210 10 C 0.305 3.695 11 O -0.415 6.415 12 N -0.327 5.327 13 C -0.079 4.079 14 C 0.023 3.977 15 H 0.123 0.877 16 C -0.184 4.184 17 C -0.011 4.011 18 N -0.334 5.334 19 C -0.374 4.374 20 H 0.105 0.895 21 C -0.170 4.170 22 N -0.540 5.540 23 Si 0.709 3.291 24 H -0.215 1.215 25 H -0.230 1.230 26 H -0.198 1.198 27 C -0.001 4.001 28 C -0.098 4.098 29 C -0.138 4.138 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.118 0.882 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.056 0.944 46 H 0.060 0.940 47 H 0.073 0.927 48 H 0.059 0.941 49 H 0.055 0.945 50 H 0.136 0.864 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -19.558 -17.950 -0.131 26.547 hybrid contribution 0.241 0.349 -1.069 1.150 sum -19.318 -17.602 -1.200 26.162 Atomic orbital electron populations 1.21744 0.94838 1.01534 1.02194 1.20534 0.96054 0.92882 1.02742 1.19850 0.99376 0.96061 0.93272 1.20903 1.00872 0.94774 0.97381 1.20981 0.99673 0.94895 0.97211 1.19304 0.99417 0.94377 0.93569 1.20260 0.93266 0.94078 1.01509 0.87894 1.22064 0.98348 0.99968 1.00644 1.20454 0.86136 0.82975 0.79894 1.90688 1.67754 1.34103 1.49004 1.47772 1.21102 1.07770 1.56088 1.22259 1.00086 0.87730 0.97794 1.22109 0.82577 1.00174 0.92831 0.87669 1.23125 1.01550 0.96500 0.97198 1.22049 0.93324 0.94548 0.91133 1.44755 1.39606 1.03098 1.45973 1.18534 1.20754 1.00358 0.97743 0.89524 1.25153 0.98493 0.95893 0.97498 1.69893 1.46670 1.02153 1.35278 0.86911 0.76018 0.77598 0.88597 1.21531 1.23037 1.19793 1.21783 0.95410 0.86230 0.96727 1.20868 0.96838 0.94516 0.97568 1.20949 1.00619 0.94845 0.97388 0.92587 0.92543 0.92586 0.91150 0.91166 0.86328 0.86188 0.90313 0.92062 0.91422 0.92441 0.91525 0.88168 0.90402 0.91154 0.94363 0.94013 0.92652 0.94138 0.94500 0.86430 0.86398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.90 37.16 0.37 -0.58 16 2 C -0.08 -0.64 6.06 -27.88 -0.17 -0.81 16 3 C -0.09 -0.86 5.13 -104.63 -0.54 -1.40 16 4 C -0.12 -1.22 9.70 -39.58 -0.38 -1.61 16 5 C -0.11 -1.19 9.67 -39.58 -0.38 -1.57 16 6 C -0.07 -0.79 4.39 -104.62 -0.46 -1.25 16 7 C -0.07 -0.79 2.10 -92.92 -0.19 -0.98 16 8 H 0.10 1.02 7.14 -51.93 -0.37 0.65 16 9 C -0.15 -1.40 8.64 37.16 0.32 -1.08 16 10 C 0.52 7.62 6.95 -10.98 -0.08 7.54 16 11 O -0.54 -9.68 14.50 5.55 0.08 -9.60 16 12 N -0.60 -8.82 2.83 -171.83 -0.49 -9.30 16 13 C 0.06 0.83 6.91 59.85 0.41 1.24 16 14 C 0.13 2.16 3.57 -66.10 -0.24 1.92 16 15 H 0.11 1.83 6.99 -51.93 -0.36 1.47 16 16 C -0.14 -2.48 6.54 -24.58 -0.16 -2.64 16 17 C 0.11 2.34 5.44 -2.53 -0.01 2.33 16 18 N -0.61 -14.10 2.65 -170.07 -0.45 -14.55 16 19 C -0.25 -6.81 10.47 -15.06 -0.16 -6.97 16 20 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 21 C 0.03 0.85 5.39 -17.43 -0.09 0.75 16 22 N -0.90 -27.04 13.97 55.49 0.78 -26.27 16 23 Si 0.88 22.11 24.93 -169.99 -4.24 17.87 16 24 H -0.29 -7.01 6.76 56.52 0.38 -6.63 16 25 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 26 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 27 C 0.12 2.47 6.24 -3.06 -0.02 2.46 16 28 C -0.08 -0.97 7.94 -39.59 -0.31 -1.28 16 29 C -0.12 -1.31 9.70 -39.59 -0.38 -1.69 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 34 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 35 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 36 H 0.12 1.08 7.95 -52.49 -0.42 0.66 16 37 H 0.08 0.68 4.53 -51.93 -0.24 0.44 16 38 H 0.06 0.58 7.38 -51.92 -0.38 0.20 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.65 6.80 -51.93 -0.35 0.30 16 41 H 0.07 0.69 6.01 -51.93 -0.31 0.38 16 42 H 0.10 1.61 5.21 -51.93 -0.27 1.34 16 43 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.04 0.74 5.56 -51.93 -0.29 0.45 16 46 H 0.04 0.96 2.87 -51.93 -0.15 0.81 16 47 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 49 H 0.04 0.74 8.04 -51.93 -0.42 0.32 16 50 H 0.12 1.44 7.52 -52.49 -0.39 1.04 16 51 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 LS Contribution 386.23 15.07 5.82 5.82 Total: -1.00 -32.25 386.23 -9.16 -41.41 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -8.18 Total: 0.24 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -2.48 Total: -5.62 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: -0.16 Total: -50.12 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.24 Total: 17.87 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.25 -9.16 -41.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033515814.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.552 kcal (2) G-P(sol) polarization free energy of solvation -32.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds