Wall clock time and date at job start Tue Mar 31 2020 16:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 109.47150 * 2 1 4 4 C 1.38230 * 119.99779 * 90.00193 * 3 2 1 5 5 C 1.38237 * 119.99748 * 180.02562 * 4 3 2 6 6 C 1.38230 * 119.99893 * 359.94962 * 5 4 3 7 7 C 1.50703 * 119.99862 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.46873 * 0.02562 * 7 6 5 9 9 C 1.52998 * 109.47518 * 240.00377 * 7 6 5 10 10 C 1.50704 * 109.46860 * 119.99932 * 7 6 5 11 11 O 1.21283 * 120.00114 * 0.02562 * 10 7 6 12 12 N 1.34777 * 120.00039 * 179.97438 * 10 7 6 13 13 C 1.46508 * 119.99831 * 0.02562 * 12 10 7 14 14 C 1.46498 * 120.00235 * 180.02562 * 12 10 7 15 15 H 1.09000 * 110.63889 * 1.69449 * 14 12 10 16 16 C 1.55154 * 110.87046 * 124.93722 * 14 12 10 17 17 C 1.54909 * 101.58178 * 82.93566 * 16 14 12 18 18 N 1.47430 * 104.83284 * 37.00613 * 17 16 14 19 19 C 1.36936 * 125.64864 * 156.13241 * 18 17 16 20 20 H 1.08000 * 119.99587 * 153.73986 * 19 18 17 21 21 C 1.38810 * 120.00327 * 333.75312 * 19 18 17 22 22 N 1.31619 * 120.00614 * 153.67852 * 21 19 18 23 23 Si 1.86803 * 119.99599 * 333.67155 * 21 19 18 24 24 H 1.48502 * 109.46929 * 95.11626 * 23 21 19 25 25 H 1.48503 * 109.47197 * 215.11702 * 23 21 19 26 26 H 1.48503 * 109.47321 * 335.12130 * 23 21 19 27 27 C 1.47023 * 108.70236 * 335.87510 * 18 17 16 28 28 C 1.38238 * 120.00210 * 0.27807 * 6 5 4 29 29 C 1.38227 * 119.99576 * 359.51760 * 28 6 5 30 30 H 1.08997 * 109.46823 * 60.00256 * 1 2 3 31 31 H 1.09002 * 109.47302 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47122 * 299.99892 * 1 2 3 33 33 H 1.09006 * 109.46861 * 239.99673 * 2 1 3 34 34 H 1.09003 * 109.46991 * 120.00146 * 2 1 3 35 35 H 1.08004 * 120.00336 * 359.97438 * 4 3 2 36 36 H 1.08001 * 119.99406 * 179.97438 * 5 4 3 37 37 H 1.08995 * 109.47019 * 180.02562 * 9 7 6 38 38 H 1.09008 * 109.46735 * 300.00312 * 9 7 6 39 39 H 1.08997 * 109.47248 * 59.99596 * 9 7 6 40 40 H 1.09000 * 109.46752 * 269.99833 * 13 12 10 41 41 H 1.09000 * 109.46900 * 29.99245 * 13 12 10 42 42 H 1.08997 * 109.46825 * 149.99866 * 13 12 10 43 43 H 1.08998 * 111.00570 * 201.00573 * 16 14 12 44 44 H 1.08996 * 111.00544 * 324.82264 * 16 14 12 45 45 H 1.09006 * 110.36545 * 278.16953 * 17 16 14 46 46 H 1.08995 * 110.36799 * 155.84512 * 17 16 14 47 47 H 0.96993 * 119.99803 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.88501 * 120.47126 * 27 18 17 49 49 H 1.08996 * 109.87857 * 241.64180 * 27 18 17 50 50 H 1.07997 * 119.99949 * 179.72129 * 28 6 5 51 51 H 1.08009 * 120.00041 * 180.25007 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7231 3.3759 1.1971 6 6 2.9539 4.0273 0.0000 7 6 3.4563 5.4482 0.0000 8 1 3.5774 5.7906 1.0277 9 6 2.4488 6.3454 -0.7216 10 6 4.7841 5.5114 -0.7099 11 8 5.2740 4.5023 -1.1709 12 7 5.4267 6.6897 -0.8335 13 6 4.8347 7.9088 -0.2771 14 6 6.7173 6.7513 -1.5241 15 1 6.9987 5.7680 -1.9009 16 6 6.6787 7.7902 -2.6758 17 6 6.9517 9.1105 -1.9130 18 7 7.9309 8.7493 -0.8717 19 6 8.8040 9.6114 -0.2638 20 1 9.1684 9.3989 0.7304 21 6 9.2205 10.7586 -0.9252 22 7 9.6040 11.8127 -0.2367 23 14 9.2368 10.8061 -2.7925 24 1 7.9731 11.4122 -3.2833 25 1 10.3891 11.6196 -3.2570 26 1 9.3611 9.4241 -3.3218 27 6 7.8104 7.3114 -0.5897 28 6 2.7190 3.3773 -1.1972 29 6 2.2628 2.0725 -1.1971 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.0824 1.5634 2.1325 36 1 2.9027 3.8851 2.1325 37 1 2.8124 7.3729 -0.7220 38 1 2.3280 6.0027 -1.7493 39 1 1.4884 6.2996 -0.2082 40 1 4.2034 8.3821 -1.0292 41 1 4.2324 7.6548 0.5952 42 1 5.6277 8.5965 0.0166 43 1 7.4626 7.5922 -3.4069 44 1 5.6987 7.8090 -3.1524 45 1 6.0337 9.4824 -1.4579 46 1 7.3720 9.8576 -2.5862 47 1 9.8954 12.6141 -0.6990 48 1 8.7593 6.8137 -0.7893 49 1 7.5218 7.1607 0.4505 50 1 2.8951 3.8878 -2.1324 51 1 2.0831 1.5632 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033515814.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:29 Heat of formation + Delta-G solvation = 5.730308 kcal Electronic energy + Delta-G solvation = -28818.795842 eV Core-core repulsion = 25104.305650 eV Total energy + Delta-G solvation = -3714.490192 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.72266 -40.32803 -39.11499 -36.23290 -35.92057 -34.35480 -33.30336 -31.78985 -31.39558 -30.10673 -29.22911 -27.89095 -26.36515 -25.41559 -24.09793 -23.62904 -22.58750 -22.14151 -21.12229 -19.93171 -19.06831 -18.41356 -17.45567 -17.41715 -16.93778 -16.52366 -16.21252 -15.98798 -15.43321 -15.29840 -14.97130 -14.90162 -14.65157 -14.52554 -14.50338 -14.25815 -13.96033 -13.83985 -13.57536 -13.34219 -13.28641 -13.17329 -12.98202 -12.92894 -12.72970 -12.56524 -12.50669 -12.44141 -12.19880 -12.01581 -11.91713 -11.79827 -11.62165 -11.59030 -11.42232 -10.67543 -10.62836 -9.74940 -9.65642 -9.38496 -8.96724 -8.22848 -5.48725 0.43118 0.57049 1.27587 1.40085 1.50327 1.60942 1.97595 2.39831 2.88214 2.98326 3.32928 3.52576 3.65544 3.71807 3.83876 3.93088 3.98355 4.12472 4.14407 4.15935 4.25750 4.34147 4.42390 4.43866 4.50257 4.53925 4.59379 4.63923 4.70947 4.72327 4.74503 4.82394 4.88048 4.89523 4.93960 4.97631 5.06062 5.08012 5.10387 5.18081 5.19142 5.25101 5.31823 5.39979 5.53699 5.58546 5.72736 5.74080 5.76785 6.09461 6.15869 6.43896 6.76213 7.15995 7.51475 8.12099 8.97455 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.032882 B = 0.002421 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.330440 B =11563.323413 C =11668.421503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.090 4.090 4 C -0.128 4.128 5 C -0.119 4.119 6 C -0.083 4.083 7 C -0.063 4.063 8 H 0.120 0.880 9 C -0.148 4.148 10 C 0.517 3.483 11 O -0.575 6.575 12 N -0.595 5.595 13 C 0.063 3.937 14 C 0.139 3.861 15 H 0.103 0.897 16 C -0.132 4.132 17 C 0.108 3.892 18 N -0.619 5.619 19 C -0.239 4.239 20 H 0.052 0.948 21 C -0.025 4.025 22 N -0.944 5.944 23 Si 0.943 3.057 24 H -0.272 1.272 25 H -0.310 1.310 26 H -0.266 1.266 27 C 0.125 3.875 28 C -0.097 4.097 29 C -0.133 4.133 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.087 0.913 38 H 0.054 0.946 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.057 0.943 46 H 0.024 0.976 47 H 0.264 0.736 48 H 0.032 0.968 49 H 0.032 0.968 50 H 0.109 0.891 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.572 -18.959 -0.604 29.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.146 4.146 5 C -0.137 4.137 6 C -0.083 4.083 7 C -0.084 4.084 8 H 0.138 0.862 9 C -0.205 4.205 10 C 0.307 3.693 11 O -0.454 6.454 12 N -0.327 5.327 13 C -0.079 4.079 14 C 0.035 3.965 15 H 0.121 0.879 16 C -0.171 4.171 17 C -0.015 4.015 18 N -0.347 5.347 19 C -0.367 4.367 20 H 0.069 0.931 21 C -0.221 4.221 22 N -0.589 5.589 23 Si 0.773 3.227 24 H -0.199 1.199 25 H -0.239 1.239 26 H -0.191 1.191 27 C 0.000 4.000 28 C -0.115 4.115 29 C -0.151 4.151 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.105 0.895 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.113 0.887 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.119 0.881 45 H 0.074 0.926 46 H 0.042 0.958 47 H 0.073 0.927 48 H 0.050 0.950 49 H 0.051 0.949 50 H 0.127 0.873 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -22.201 -19.285 -0.793 29.418 hybrid contribution 1.022 0.655 -0.742 1.423 sum -21.179 -18.630 -1.535 28.249 Atomic orbital electron populations 1.21718 0.93935 1.02381 1.01947 1.20584 0.96760 0.91445 1.03367 1.20169 0.98656 0.97167 0.92985 1.21221 1.00320 0.94743 0.98297 1.21259 0.99480 0.95352 0.97563 1.19453 1.00131 0.94876 0.93875 1.20287 0.91506 0.94516 1.02044 0.86184 1.22053 0.98503 0.99675 1.00239 1.21082 0.86965 0.82065 0.79226 1.90673 1.68893 1.35287 1.50536 1.47802 1.20262 1.08685 1.55927 1.22365 0.99451 0.86423 0.99644 1.21804 0.82915 0.99697 0.92120 0.87894 1.23065 1.03191 0.94073 0.96730 1.22217 0.93003 0.95944 0.90379 1.44769 1.39500 1.04065 1.46330 1.18408 1.20791 1.00848 0.96698 0.93074 1.25723 0.99146 0.95622 1.01613 1.70002 1.49034 1.02907 1.36962 0.85861 0.76152 0.77644 0.83090 1.19881 1.23925 1.19134 1.21808 0.96364 0.84531 0.97309 1.20937 0.97803 0.95224 0.97512 1.21169 1.00768 0.94727 0.98409 0.93035 0.91166 0.92629 0.90823 0.90273 0.84337 0.84534 0.89457 0.92690 0.89753 0.90176 0.88659 0.91345 0.90510 0.88125 0.92552 0.95786 0.92714 0.95025 0.94946 0.87322 0.85396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.90 71.98 0.71 -0.85 16 2 C -0.08 -1.12 6.06 29.85 0.18 -0.94 16 3 C -0.09 -1.66 5.13 -19.87 -0.10 -1.76 16 4 C -0.13 -2.33 9.70 22.27 0.22 -2.11 16 5 C -0.12 -2.33 9.67 22.27 0.22 -2.12 16 6 C -0.08 -1.84 4.39 -19.87 -0.09 -1.93 16 7 C -0.06 -1.26 2.10 -12.28 -0.03 -1.28 16 8 H 0.12 1.99 7.14 -2.39 -0.02 1.97 16 9 C -0.15 -2.26 8.64 71.98 0.62 -1.63 16 10 C 0.52 14.30 6.95 87.66 0.61 14.91 16 11 O -0.57 -20.17 14.50 -3.04 -0.04 -20.22 16 12 N -0.60 -16.39 2.83 -815.94 -2.31 -18.69 16 13 C 0.06 1.45 6.91 127.77 0.88 2.34 16 14 C 0.14 4.53 3.57 46.18 0.16 4.69 16 15 H 0.10 3.47 6.99 -2.39 -0.02 3.45 16 16 C -0.13 -4.17 6.54 31.99 0.21 -3.96 16 17 C 0.11 4.25 5.44 86.85 0.47 4.72 16 18 N -0.62 -28.68 2.65 -691.98 -1.83 -30.52 16 19 C -0.24 -13.49 10.47 84.03 0.88 -12.61 16 20 H 0.05 3.18 8.06 -2.91 -0.02 3.15 16 21 C -0.02 -1.43 5.39 84.86 0.46 -0.97 16 22 N -0.94 -58.33 13.97 21.65 0.30 -58.03 16 23 Si 0.94 46.02 24.93 68.60 1.71 47.73 16 24 H -0.27 -12.46 6.76 99.48 0.67 -11.79 16 25 H -0.31 -15.43 7.11 99.48 0.71 -14.73 16 26 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 27 C 0.13 4.97 6.24 86.73 0.54 5.51 16 28 C -0.10 -2.27 7.94 22.27 0.18 -2.09 16 29 C -0.13 -2.77 9.70 22.27 0.22 -2.56 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.92 8.09 -2.38 -0.02 0.91 16 34 H 0.08 0.91 8.09 -2.39 -0.02 0.89 16 35 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 36 H 0.14 2.11 7.95 -2.91 -0.02 2.09 16 37 H 0.09 1.17 4.53 -2.39 -0.01 1.16 16 38 H 0.05 0.92 7.38 -2.38 -0.02 0.90 16 39 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 1.51 6.80 -2.39 -0.02 1.49 16 41 H 0.10 1.65 6.01 -2.39 -0.01 1.63 16 42 H 0.07 2.08 5.21 -2.39 -0.01 2.07 16 43 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 44 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 45 H 0.06 2.04 5.56 -2.38 -0.01 2.02 16 46 H 0.02 1.05 2.87 -2.39 -0.01 1.04 16 47 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 48 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.03 1.31 8.04 -2.39 -0.02 1.29 16 50 H 0.11 2.64 7.52 -2.91 -0.02 2.62 16 51 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -71.27 386.23 5.05 -66.21 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.88 Total: 16.16 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 6.34 Total: -2.64 kcal Atomic # 7 Polarization: -103.40 SS G_CDS: -3.84 Total: -107.24 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.04 Total: -20.22 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.71 Total: 47.73 kcal Total: -71.27 5.05 -66.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033515814.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.945 kcal (2) G-P(sol) polarization free energy of solvation -71.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds