Wall clock time and date at job start Tue Mar 31 2020 16:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50701 * 109.47481 * 2 1 4 4 C 1.38387 * 119.85519 * 264.98208 * 3 2 1 5 5 C 1.37924 * 120.14680 * 179.97438 * 4 3 2 6 6 C 1.39600 * 119.85423 * 0.02562 * 5 4 3 7 7 C 1.47846 * 120.14712 * 180.02562 * 6 5 4 8 8 O 1.21548 * 120.00036 * 140.92544 * 7 6 5 9 9 N 1.34780 * 119.99724 * 320.92763 * 7 6 5 10 10 C 1.46500 * 120.00022 * 4.90937 * 9 7 6 11 11 C 1.46502 * 119.99697 * 184.91458 * 9 7 6 12 12 H 1.08991 * 110.64448 * 1.68409 * 11 9 7 13 13 C 1.55160 * 110.71911 * 125.02403 * 11 9 7 14 14 C 1.54909 * 101.57990 * 153.86435 * 13 11 9 15 15 N 1.47426 * 104.83448 * 322.98783 * 14 13 11 16 16 C 1.36938 * 125.64920 * 204.09899 * 15 14 13 17 17 H 1.07994 * 119.99620 * 180.02562 * 16 15 14 18 18 C 1.38805 * 119.99882 * 0.03518 * 16 15 14 19 19 N 1.31623 * 120.00109 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99659 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46820 * 90.00563 * 20 18 16 22 22 H 1.48502 * 109.47152 * 209.99839 * 20 18 16 23 23 H 1.48492 * 109.47427 * 330.00092 * 20 18 16 24 24 C 1.47020 * 108.70099 * 24.13087 * 15 14 13 25 25 C 1.39560 * 119.70960 * 359.75419 * 6 5 4 26 26 C 1.37971 * 119.85159 * 0.49596 * 25 6 5 27 27 C 1.50706 * 119.92906 * 179.75422 * 26 25 6 28 28 C 1.53001 * 109.47032 * 264.72662 * 27 26 25 29 29 H 1.09001 * 109.47503 * 300.00183 * 1 2 3 30 30 H 1.09000 * 109.47215 * 60.00019 * 1 2 3 31 31 H 1.09001 * 109.47277 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47503 * 239.99817 * 2 1 3 33 33 H 1.09000 * 109.47215 * 119.99981 * 2 1 3 34 34 H 1.07998 * 119.92296 * 359.97438 * 4 3 2 35 35 H 1.08004 * 120.07879 * 180.02562 * 5 4 3 36 36 H 1.09005 * 109.46750 * 85.11731 * 10 9 7 37 37 H 1.09001 * 109.46943 * 205.11497 * 10 9 7 38 38 H 1.08996 * 109.47374 * 325.11441 * 10 9 7 39 39 H 1.09005 * 111.00256 * 271.93488 * 13 11 9 40 40 H 1.08995 * 111.00654 * 35.78438 * 13 11 9 41 41 H 1.09003 * 110.36361 * 204.14736 * 14 13 11 42 42 H 1.08998 * 110.46427 * 81.87607 * 14 13 11 43 43 H 0.97002 * 119.99478 * 180.02562 * 19 18 16 44 44 H 1.09006 * 109.88056 * 239.52675 * 24 15 14 45 45 H 1.08996 * 109.88477 * 118.35584 * 24 15 14 46 46 H 1.08000 * 120.07208 * 180.25058 * 25 6 5 47 47 H 1.09001 * 109.47151 * 144.73090 * 27 26 25 48 48 H 1.08994 * 109.46782 * 24.72633 * 27 26 25 49 49 H 1.09003 * 109.47467 * 300.00234 * 28 27 26 50 50 H 1.09008 * 109.46993 * 59.99560 * 28 27 26 51 51 H 1.08994 * 109.47144 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3610 2.0353 -1.1956 5 6 2.8209 3.3356 -1.2027 6 6 2.9551 4.0317 -0.0001 7 6 3.4469 5.4260 -0.0002 8 8 2.9587 6.2427 0.7562 9 7 4.4366 5.7914 -0.8389 10 6 4.9512 4.8373 -1.8244 11 6 4.9978 7.1426 -0.7651 12 1 4.5264 7.7112 0.0364 13 6 6.5365 7.0882 -0.5732 14 6 6.9746 8.4408 -1.1884 15 7 6.0777 8.6391 -2.3415 16 6 6.3488 9.4103 -3.4401 17 1 5.6224 9.4917 -4.2351 18 6 7.5572 10.0870 -3.5320 19 7 8.4428 9.9870 -2.5633 20 14 7.9267 11.1394 -5.0304 21 1 7.4528 12.5262 -4.7902 22 1 9.3910 11.1526 -5.2771 23 1 7.2302 10.5764 -6.2148 24 6 4.8436 7.8725 -2.1160 25 6 2.6175 3.4077 1.2017 26 6 2.1636 2.1049 1.1953 27 6 1.8038 1.4275 2.4926 28 6 3.0008 0.6168 2.9936 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2571 1.4954 -2.1252 35 1 3.0767 3.8142 -2.1364 36 1 4.3276 4.8660 -2.7179 37 1 5.9751 5.1031 -2.0872 38 1 4.9339 3.8329 -1.4012 39 1 6.7969 7.0373 0.4841 40 1 6.9693 6.2513 -1.1212 41 1 8.0119 8.3888 -1.5192 42 1 6.8476 9.2470 -0.4659 43 1 9.2871 10.4603 -2.6274 44 1 4.7074 7.1455 -2.9167 45 1 3.9893 8.5483 -2.0768 46 1 2.7152 3.9422 2.1351 47 1 0.9558 0.7618 2.3319 48 1 1.5390 2.1808 3.2344 49 1 3.2657 -0.1365 2.2516 50 1 3.8489 1.2826 3.1542 51 1 2.7408 0.1273 3.9321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033717126.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:39 Heat of formation + Delta-G solvation = 14.233712 kcal Electronic energy + Delta-G solvation = -28499.897548 eV Core-core repulsion = 24785.776091 eV Total energy + Delta-G solvation = -3714.121457 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.62988 -39.22946 -37.28698 -35.26677 -34.49140 -33.71554 -32.13184 -30.19222 -29.73100 -28.99856 -27.51535 -26.70727 -25.03101 -24.46423 -23.75932 -21.88690 -21.65929 -20.23400 -20.06592 -18.88796 -17.11865 -16.98559 -16.56880 -16.14323 -15.85625 -15.02788 -14.81001 -14.57383 -14.23509 -14.12112 -13.97933 -13.92421 -13.75119 -13.49212 -13.12309 -12.99805 -12.71178 -12.62564 -12.44940 -12.24509 -12.08892 -11.85170 -11.66022 -11.60851 -11.46377 -11.41458 -11.05820 -11.02794 -10.88460 -10.81829 -10.77337 -10.41119 -10.12375 -9.83389 -9.67199 -9.53963 -9.01582 -8.74342 -8.66879 -8.34344 -6.85791 -5.66705 -3.09024 0.81827 1.18758 2.80348 3.12484 3.39620 3.44550 3.46340 3.61495 4.37465 4.45128 4.48996 4.53581 4.63467 4.71922 4.92405 4.99133 5.01564 5.09637 5.17360 5.26366 5.29153 5.33091 5.37317 5.41557 5.47351 5.52655 5.54604 5.59243 5.61406 5.67570 5.71510 5.75245 5.80260 5.83152 5.89480 5.93279 6.00753 6.17470 6.21694 6.23255 6.37689 6.41200 6.55888 6.57282 6.70107 6.72849 6.99369 7.48015 7.58480 7.61581 7.82858 8.28871 8.34470 9.20067 9.80615 10.44921 11.37073 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026832 B = 0.002340 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.262577 B =11962.169385 C =12410.199417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.062 4.062 4 C -0.124 4.124 5 C -0.095 4.095 6 C -0.123 4.123 7 C 0.556 3.444 8 O -0.540 6.540 9 N -0.593 5.593 10 C 0.070 3.930 11 C 0.126 3.874 12 H 0.104 0.896 13 C -0.153 4.153 14 C 0.153 3.847 15 N -0.602 5.602 16 C -0.222 4.222 17 H 0.077 0.923 18 C -0.011 4.011 19 N -0.922 5.922 20 Si 0.916 3.084 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.130 3.870 25 C -0.062 4.062 26 C -0.088 4.088 27 C -0.087 4.087 28 C -0.148 4.148 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.126 0.874 35 H 0.137 0.863 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.110 0.890 42 H 0.015 0.985 43 H 0.252 0.748 44 H 0.027 0.973 45 H 0.025 0.975 46 H 0.129 0.871 47 H 0.076 0.924 48 H 0.072 0.928 49 H 0.056 0.944 50 H 0.057 0.943 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.023 -23.424 6.947 27.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 C -0.063 4.063 4 C -0.141 4.141 5 C -0.113 4.113 6 C -0.127 4.127 7 C 0.344 3.656 8 O -0.418 6.418 9 N -0.325 5.325 10 C -0.073 4.073 11 C 0.023 3.977 12 H 0.122 0.878 13 C -0.192 4.192 14 C 0.028 3.972 15 N -0.329 5.329 16 C -0.350 4.350 17 H 0.095 0.905 18 C -0.207 4.207 19 N -0.571 5.571 20 Si 0.746 3.254 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.207 1.207 24 C 0.003 3.997 25 C -0.081 4.081 26 C -0.089 4.089 27 C -0.125 4.125 28 C -0.205 4.205 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.144 0.856 35 H 0.154 0.846 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.128 0.872 42 H 0.033 0.967 43 H 0.063 0.937 44 H 0.045 0.955 45 H 0.043 0.957 46 H 0.147 0.853 47 H 0.094 0.906 48 H 0.091 0.909 49 H 0.075 0.925 50 H 0.076 0.924 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.097 -22.839 7.243 26.841 hybrid contribution 0.205 0.698 -0.903 1.160 sum -11.892 -22.140 6.340 25.919 Atomic orbital electron populations 1.21764 0.94598 1.01740 1.02443 1.20641 0.96316 0.92657 1.03122 1.19899 0.97678 0.96088 0.92604 1.20959 1.00562 0.95007 0.97620 1.21673 0.97413 0.94386 0.97843 1.19907 1.03897 0.94252 0.94596 1.18379 0.79464 0.87493 0.80277 1.90764 1.57349 1.52683 1.41029 1.47757 1.35935 1.13922 1.34837 1.22121 1.00993 0.92562 0.91578 1.22290 0.94684 0.81138 0.99607 0.87840 1.23409 0.93615 1.01813 1.00361 1.21942 0.98531 0.89209 0.87507 1.44441 1.13590 1.54903 1.19957 1.19068 1.00314 1.20202 0.95399 0.90468 1.24794 0.96777 1.00651 0.98438 1.69785 1.08636 1.46499 1.32189 0.86056 0.77242 0.80260 0.81833 1.21603 1.21638 1.20706 1.21514 0.90899 0.93901 0.93367 1.21042 0.95912 0.93723 0.97389 1.19641 1.00482 0.93845 0.94887 1.20598 0.98760 0.99361 0.93746 1.21774 0.97984 1.00011 1.00779 0.92352 0.92427 0.92336 0.90956 0.90496 0.85578 0.84560 0.92361 0.89907 0.90883 0.92020 0.91574 0.87245 0.96680 0.93678 0.95475 0.95684 0.85300 0.90570 0.90912 0.92455 0.92384 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.72 37.15 0.36 -0.52 16 2 C -0.09 -0.58 5.37 -27.89 -0.15 -0.73 16 3 C -0.06 -0.55 5.14 -104.53 -0.54 -1.09 16 4 C -0.12 -1.13 9.66 -39.64 -0.38 -1.52 16 5 C -0.09 -1.04 7.57 -39.19 -0.30 -1.33 16 6 C -0.12 -1.65 5.24 -104.96 -0.55 -2.20 16 7 C 0.56 9.26 7.36 -12.33 -0.09 9.17 16 8 O -0.54 -10.89 16.29 5.32 0.09 -10.80 16 9 N -0.59 -9.60 2.88 -172.94 -0.50 -10.10 16 10 C 0.07 0.90 7.64 59.85 0.46 1.36 16 11 C 0.13 2.41 3.35 -66.09 -0.22 2.19 16 12 H 0.10 2.15 7.01 -51.93 -0.36 1.78 16 13 C -0.15 -2.96 6.59 -24.58 -0.16 -3.12 16 14 C 0.15 3.74 5.89 -2.53 -0.01 3.73 16 15 N -0.60 -15.56 3.39 -170.07 -0.58 -16.13 16 16 C -0.22 -6.19 10.27 -15.06 -0.15 -6.34 16 17 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 18 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 19 N -0.92 -26.81 10.09 55.49 0.56 -26.25 16 20 Si 0.92 22.05 29.55 -169.99 -5.02 17.03 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C 0.13 2.83 6.88 -3.06 -0.02 2.81 16 25 C -0.06 -0.75 9.26 -39.19 -0.36 -1.11 16 26 C -0.09 -0.86 5.13 -104.68 -0.54 -1.40 16 27 C -0.09 -0.65 5.38 -27.88 -0.15 -0.80 16 28 C -0.15 -0.99 9.72 37.16 0.36 -0.63 16 29 H 0.06 0.36 6.79 -51.93 -0.35 0.01 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.40 8.05 -51.93 -0.42 -0.01 16 33 H 0.08 0.44 5.59 -51.93 -0.29 0.15 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.14 1.37 5.27 -52.48 -0.28 1.09 16 36 H 0.06 0.67 6.78 -51.93 -0.35 0.32 16 37 H 0.08 1.14 6.12 -51.93 -0.32 0.82 16 38 H 0.07 0.79 5.84 -51.93 -0.30 0.49 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.07 1.21 6.14 -51.93 -0.32 0.89 16 41 H 0.11 2.96 5.87 -51.93 -0.30 2.66 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.03 0.57 7.05 -51.93 -0.37 0.20 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.13 1.58 8.05 -52.49 -0.42 1.16 16 47 H 0.08 0.49 5.60 -51.93 -0.29 0.19 16 48 H 0.07 0.54 8.05 -51.93 -0.42 0.12 16 49 H 0.06 0.36 6.79 -51.93 -0.35 0.01 16 50 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 51 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 389.39 15.07 5.87 5.87 Total: -1.00 -32.20 389.39 -10.21 -42.41 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -8.08 Total: -0.07 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -2.55 Total: -1.95 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.52 Total: -52.48 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.20 -10.21 -42.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033717126.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.639 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds