Wall clock time and date at job start Tue Mar 31 2020 16:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50701 * 109.47481 * 2 1 4 4 C 1.38387 * 119.85519 * 264.98208 * 3 2 1 5 5 C 1.37924 * 120.14680 * 179.97438 * 4 3 2 6 6 C 1.39600 * 119.85423 * 0.02562 * 5 4 3 7 7 C 1.47846 * 120.14712 * 180.02562 * 6 5 4 8 8 O 1.21548 * 120.00036 * 140.92544 * 7 6 5 9 9 N 1.34780 * 119.99724 * 320.92763 * 7 6 5 10 10 C 1.46500 * 120.00022 * 4.90937 * 9 7 6 11 11 C 1.46502 * 119.99697 * 184.91458 * 9 7 6 12 12 H 1.08991 * 110.64448 * 1.68409 * 11 9 7 13 13 C 1.55160 * 110.71911 * 125.02403 * 11 9 7 14 14 C 1.54909 * 101.57990 * 153.86435 * 13 11 9 15 15 N 1.47426 * 104.83448 * 322.98783 * 14 13 11 16 16 C 1.36938 * 125.64920 * 204.09899 * 15 14 13 17 17 H 1.07994 * 119.99620 * 180.02562 * 16 15 14 18 18 C 1.38805 * 119.99882 * 0.03518 * 16 15 14 19 19 N 1.31623 * 120.00109 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99659 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46820 * 90.00563 * 20 18 16 22 22 H 1.48502 * 109.47152 * 209.99839 * 20 18 16 23 23 H 1.48492 * 109.47427 * 330.00092 * 20 18 16 24 24 C 1.47020 * 108.70099 * 24.13087 * 15 14 13 25 25 C 1.39560 * 119.70960 * 359.75419 * 6 5 4 26 26 C 1.37971 * 119.85159 * 0.49596 * 25 6 5 27 27 C 1.50706 * 119.92906 * 179.75422 * 26 25 6 28 28 C 1.53001 * 109.47032 * 264.72662 * 27 26 25 29 29 H 1.09001 * 109.47503 * 300.00183 * 1 2 3 30 30 H 1.09000 * 109.47215 * 60.00019 * 1 2 3 31 31 H 1.09001 * 109.47277 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47503 * 239.99817 * 2 1 3 33 33 H 1.09000 * 109.47215 * 119.99981 * 2 1 3 34 34 H 1.07998 * 119.92296 * 359.97438 * 4 3 2 35 35 H 1.08004 * 120.07879 * 180.02562 * 5 4 3 36 36 H 1.09005 * 109.46750 * 85.11731 * 10 9 7 37 37 H 1.09001 * 109.46943 * 205.11497 * 10 9 7 38 38 H 1.08996 * 109.47374 * 325.11441 * 10 9 7 39 39 H 1.09005 * 111.00256 * 271.93488 * 13 11 9 40 40 H 1.08995 * 111.00654 * 35.78438 * 13 11 9 41 41 H 1.09003 * 110.36361 * 204.14736 * 14 13 11 42 42 H 1.08998 * 110.46427 * 81.87607 * 14 13 11 43 43 H 0.97002 * 119.99478 * 180.02562 * 19 18 16 44 44 H 1.09006 * 109.88056 * 239.52675 * 24 15 14 45 45 H 1.08996 * 109.88477 * 118.35584 * 24 15 14 46 46 H 1.08000 * 120.07208 * 180.25058 * 25 6 5 47 47 H 1.09001 * 109.47151 * 144.73090 * 27 26 25 48 48 H 1.08994 * 109.46782 * 24.72633 * 27 26 25 49 49 H 1.09003 * 109.47467 * 300.00234 * 28 27 26 50 50 H 1.09008 * 109.46993 * 59.99560 * 28 27 26 51 51 H 1.08994 * 109.47144 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3610 2.0353 -1.1956 5 6 2.8209 3.3356 -1.2027 6 6 2.9551 4.0317 -0.0001 7 6 3.4469 5.4260 -0.0002 8 8 2.9587 6.2427 0.7562 9 7 4.4366 5.7914 -0.8389 10 6 4.9512 4.8373 -1.8244 11 6 4.9978 7.1426 -0.7651 12 1 4.5264 7.7112 0.0364 13 6 6.5365 7.0882 -0.5732 14 6 6.9746 8.4408 -1.1884 15 7 6.0777 8.6391 -2.3415 16 6 6.3488 9.4103 -3.4401 17 1 5.6224 9.4917 -4.2351 18 6 7.5572 10.0870 -3.5320 19 7 8.4428 9.9870 -2.5633 20 14 7.9267 11.1394 -5.0304 21 1 7.4528 12.5262 -4.7902 22 1 9.3910 11.1526 -5.2771 23 1 7.2302 10.5764 -6.2148 24 6 4.8436 7.8725 -2.1160 25 6 2.6175 3.4077 1.2017 26 6 2.1636 2.1049 1.1953 27 6 1.8038 1.4275 2.4926 28 6 3.0008 0.6168 2.9936 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2571 1.4954 -2.1252 35 1 3.0767 3.8142 -2.1364 36 1 4.3276 4.8660 -2.7179 37 1 5.9751 5.1031 -2.0872 38 1 4.9339 3.8329 -1.4012 39 1 6.7969 7.0373 0.4841 40 1 6.9693 6.2513 -1.1212 41 1 8.0119 8.3888 -1.5192 42 1 6.8476 9.2470 -0.4659 43 1 9.2871 10.4603 -2.6274 44 1 4.7074 7.1455 -2.9167 45 1 3.9893 8.5483 -2.0768 46 1 2.7152 3.9422 2.1351 47 1 0.9558 0.7618 2.3319 48 1 1.5390 2.1808 3.2344 49 1 3.2657 -0.1365 2.2516 50 1 3.8489 1.2826 3.1542 51 1 2.7408 0.1273 3.9321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033717126.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:38 Heat of formation + Delta-G solvation = -2.527965 kcal Electronic energy + Delta-G solvation = -28500.624389 eV Core-core repulsion = 24785.776091 eV Total energy + Delta-G solvation = -3714.848298 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.71916 -40.30288 -38.92554 -36.52470 -35.58119 -34.32665 -34.00163 -31.31046 -30.89174 -30.25881 -29.00525 -27.97628 -26.60253 -25.46854 -24.66255 -22.74122 -22.48439 -22.16474 -21.24029 -20.22802 -18.98500 -18.30015 -17.68995 -17.11553 -16.78087 -16.63939 -16.13935 -15.93501 -15.72632 -15.17024 -14.83290 -14.72458 -14.64189 -14.45612 -14.34545 -14.14671 -13.96128 -13.71774 -13.49624 -13.43388 -13.26422 -13.10622 -12.99809 -12.80525 -12.72804 -12.41662 -12.38134 -12.13913 -12.10519 -12.02964 -12.01994 -11.85452 -11.67695 -11.44142 -11.41343 -10.94231 -10.76817 -9.88203 -9.69053 -9.52386 -8.94583 -7.79578 -5.25674 -0.06648 0.39706 1.46892 1.49131 1.57733 1.62455 1.85491 2.49066 2.73616 3.30748 3.38595 3.67943 3.74831 3.81602 3.85368 3.91535 3.94696 4.13106 4.17177 4.18016 4.24699 4.41578 4.49399 4.51845 4.55888 4.56155 4.58935 4.60215 4.62449 4.78407 4.79767 4.86875 4.89557 4.97894 5.02485 5.03057 5.08147 5.11739 5.13463 5.23958 5.36084 5.36327 5.42989 5.44772 5.50827 5.51986 5.55824 5.69014 5.74515 5.97840 6.26064 6.31201 7.00379 7.07033 7.72461 8.36448 9.22372 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026832 B = 0.002340 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.262577 B =11962.169385 C =12410.199417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.056 4.056 4 C -0.120 4.120 5 C -0.095 4.095 6 C -0.145 4.145 7 C 0.553 3.447 8 O -0.586 6.586 9 N -0.592 5.592 10 C 0.067 3.933 11 C 0.140 3.860 12 H 0.083 0.917 13 C -0.133 4.133 14 C 0.157 3.843 15 N -0.621 5.621 16 C -0.240 4.240 17 H 0.081 0.919 18 C -0.065 4.065 19 N -0.949 5.949 20 Si 0.983 3.017 21 H -0.290 1.290 22 H -0.290 1.290 23 H -0.267 1.267 24 C 0.132 3.868 25 C -0.078 4.078 26 C -0.089 4.089 27 C -0.087 4.087 28 C -0.146 4.146 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.156 0.844 35 H 0.146 0.854 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.084 0.916 42 H -0.014 1.014 43 H 0.249 0.751 44 H 0.043 0.957 45 H 0.012 0.988 46 H 0.115 0.885 47 H 0.092 0.908 48 H 0.067 0.933 49 H 0.064 0.936 50 H 0.043 0.957 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.015 -26.798 5.717 30.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.056 4.056 4 C -0.137 4.137 5 C -0.113 4.113 6 C -0.148 4.148 7 C 0.344 3.656 8 O -0.468 6.468 9 N -0.322 5.322 10 C -0.074 4.074 11 C 0.035 3.965 12 H 0.101 0.899 13 C -0.172 4.172 14 C 0.032 3.968 15 N -0.348 5.348 16 C -0.369 4.369 17 H 0.099 0.901 18 C -0.257 4.257 19 N -0.598 5.598 20 Si 0.811 3.189 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.192 1.192 24 C 0.006 3.994 25 C -0.097 4.097 26 C -0.089 4.089 27 C -0.124 4.124 28 C -0.203 4.203 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.173 0.827 35 H 0.164 0.836 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.116 0.884 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.004 0.996 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.030 0.970 46 H 0.133 0.867 47 H 0.111 0.889 48 H 0.086 0.914 49 H 0.083 0.917 50 H 0.063 0.937 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.105 -26.256 5.999 29.951 hybrid contribution 0.435 1.680 -0.490 1.804 sum -12.670 -24.576 5.508 28.193 Atomic orbital electron populations 1.21765 0.94140 1.02655 1.01964 1.20722 0.96543 0.90880 1.04436 1.20286 0.96039 0.97285 0.92035 1.21302 0.99214 0.94252 0.98968 1.21777 0.97433 0.95047 0.97073 1.19695 1.06382 0.92576 0.96171 1.18972 0.78769 0.88635 0.79204 1.90729 1.58905 1.54288 1.42864 1.47747 1.35827 1.13017 1.35615 1.22356 1.00680 0.92838 0.91509 1.21841 0.94441 0.82721 0.97448 0.89881 1.23204 0.93573 0.99319 1.01092 1.21720 0.97254 0.91028 0.86836 1.44701 1.15151 1.55159 1.19753 1.19433 1.00598 1.20685 0.96184 0.90091 1.25656 0.96684 1.02059 1.01336 1.70023 1.08757 1.47157 1.33866 0.85008 0.76806 0.78208 0.78851 1.21671 1.21670 1.19200 1.21576 0.88917 0.93722 0.95221 1.21063 0.97074 0.94922 0.96608 1.19874 0.99643 0.92913 0.96471 1.20655 0.99676 0.99500 0.92594 1.21758 0.97044 0.99772 1.01710 0.92887 0.92916 0.90769 0.89394 0.89526 0.82674 0.83625 0.90617 0.90575 0.88425 0.90468 0.89856 0.89830 0.99634 0.94135 0.93882 0.96962 0.86741 0.88943 0.91381 0.91716 0.93738 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.72 71.98 0.70 -0.55 16 2 C -0.09 -0.79 5.37 29.85 0.16 -0.63 16 3 C -0.06 -0.83 5.14 -19.80 -0.10 -0.93 16 4 C -0.12 -1.79 9.66 22.23 0.21 -1.57 16 5 C -0.10 -1.86 7.57 22.52 0.17 -1.69 16 6 C -0.15 -3.79 5.24 -20.09 -0.11 -3.90 16 7 C 0.55 18.70 7.36 86.79 0.64 19.34 16 8 O -0.59 -24.69 16.29 -3.87 -0.06 -24.75 16 9 N -0.59 -18.94 2.88 -819.35 -2.36 -21.30 16 10 C 0.07 1.60 7.64 127.77 0.98 2.58 16 11 C 0.14 5.46 3.35 46.18 0.15 5.61 16 12 H 0.08 3.61 7.01 -2.39 -0.02 3.59 16 13 C -0.13 -5.18 6.59 31.99 0.21 -4.97 16 14 C 0.16 7.94 5.89 86.85 0.51 8.45 16 15 N -0.62 -32.81 3.39 -691.99 -2.35 -35.16 16 16 C -0.24 -13.61 10.27 84.03 0.86 -12.75 16 17 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 18 C -0.06 -3.68 5.49 84.86 0.47 -3.22 16 19 N -0.95 -56.55 10.09 21.65 0.22 -56.34 16 20 Si 0.98 45.66 29.55 68.60 2.03 47.68 16 21 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 22 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 24 C 0.13 5.81 6.88 86.73 0.60 6.41 16 25 C -0.08 -1.88 9.26 22.53 0.21 -1.67 16 26 C -0.09 -1.59 5.13 -19.90 -0.10 -1.69 16 27 C -0.09 -1.15 5.38 29.85 0.16 -0.99 16 28 C -0.15 -1.65 9.72 71.98 0.70 -0.95 16 29 H 0.05 0.51 6.79 -2.39 -0.02 0.49 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.09 0.57 8.05 -2.39 -0.02 0.55 16 33 H 0.09 0.64 5.59 -2.39 -0.01 0.63 16 34 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 35 H 0.15 2.51 5.27 -2.91 -0.02 2.49 16 36 H 0.08 1.55 6.78 -2.38 -0.02 1.54 16 37 H 0.08 1.94 6.12 -2.39 -0.01 1.92 16 38 H 0.10 1.86 5.84 -2.39 -0.01 1.85 16 39 H 0.08 2.77 8.14 -2.38 -0.02 2.75 16 40 H 0.08 2.98 6.14 -2.39 -0.01 2.96 16 41 H 0.08 4.70 5.87 -2.39 -0.01 4.68 16 42 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 43 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 44 H 0.04 1.77 7.05 -2.38 -0.02 1.75 16 45 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.11 2.99 8.05 -2.91 -0.02 2.97 16 47 H 0.09 0.92 5.60 -2.39 -0.01 0.91 16 48 H 0.07 0.96 8.05 -2.39 -0.02 0.94 16 49 H 0.06 0.64 6.79 -2.39 -0.02 0.62 16 50 H 0.04 0.62 8.14 -2.38 -0.02 0.61 16 51 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -72.32 389.39 4.82 -67.51 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.92 Total: 15.48 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 6.42 Total: 6.88 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -4.49 Total: -112.80 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.06 Total: -24.75 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -72.32 4.82 -67.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033717126.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.978 kcal (2) G-P(sol) polarization free energy of solvation -72.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds