Wall clock time and date at job start Tue Mar 31 2020 16:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50704 * 109.46613 * 2 1 4 4 C 1.38380 * 119.85544 * 264.99613 * 3 2 1 5 5 C 1.37930 * 120.14915 * 179.97438 * 4 3 2 6 6 C 1.39598 * 119.85141 * 0.02828 * 5 4 3 7 7 C 1.47843 * 120.14759 * 179.97438 * 6 5 4 8 8 O 1.21554 * 120.00373 * 215.02362 * 7 6 5 9 9 N 1.34777 * 119.99935 * 35.01831 * 7 6 5 10 10 C 1.46507 * 119.99995 * 5.81770 * 9 7 6 11 11 C 1.46504 * 120.00397 * 185.82129 * 9 7 6 12 12 H 1.09001 * 110.88214 * 3.87776 * 11 9 7 13 13 C 1.55148 * 111.00205 * 240.00208 * 11 9 7 14 14 C 1.54328 * 102.94097 * 206.42209 * 13 11 9 15 15 N 1.47021 * 107.27024 * 22.18685 * 14 13 11 16 16 C 1.36938 * 125.64863 * 181.02391 * 15 14 13 17 17 H 1.07997 * 120.00209 * 174.92318 * 16 15 14 18 18 C 1.38818 * 119.99942 * 354.92289 * 16 15 14 19 19 N 1.31620 * 119.99962 * 214.20631 * 18 16 15 20 20 Si 1.86798 * 119.99666 * 34.48053 * 18 16 15 21 21 H 1.48498 * 109.46749 * 173.99014 * 20 18 16 22 22 H 1.48500 * 109.47279 * 293.98997 * 20 18 16 23 23 H 1.48502 * 109.47122 * 53.99404 * 20 18 16 24 24 C 1.47427 * 108.70220 * 1.29334 * 15 14 13 25 25 C 1.39560 * 119.71000 * 0.25141 * 6 5 4 26 26 C 1.37984 * 119.85104 * 359.44629 * 25 6 5 27 27 C 1.50695 * 119.92513 * 180.29654 * 26 25 6 28 28 C 1.52998 * 109.47528 * 265.27969 * 27 26 25 29 29 H 1.08993 * 109.47262 * 60.00250 * 1 2 3 30 30 H 1.08998 * 109.46616 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47178 * 299.99573 * 1 2 3 32 32 H 1.08996 * 109.47178 * 240.00426 * 2 1 3 33 33 H 1.08993 * 109.47262 * 119.99749 * 2 1 3 34 34 H 1.08003 * 119.92309 * 0.02562 * 4 3 2 35 35 H 1.07995 * 120.07829 * 180.02562 * 5 4 3 36 36 H 1.09003 * 109.46818 * 274.70531 * 10 9 7 37 37 H 1.09002 * 109.47046 * 34.70258 * 10 9 7 38 38 H 1.08997 * 109.46738 * 154.70088 * 10 9 7 39 39 H 1.09000 * 110.72708 * 88.05595 * 13 11 9 40 40 H 1.09004 * 110.87523 * 324.84985 * 13 11 9 41 41 H 1.09008 * 109.87957 * 262.77457 * 14 13 11 42 42 H 1.08999 * 109.88366 * 141.61049 * 14 13 11 43 43 H 0.97001 * 119.99783 * 5.28128 * 19 18 16 44 44 H 1.08998 * 110.36421 * 94.48206 * 24 15 14 45 45 H 1.08993 * 110.36245 * 216.79976 * 24 15 14 46 46 H 1.08002 * 120.07224 * 179.75569 * 25 6 5 47 47 H 1.09008 * 109.47407 * 25.28292 * 27 26 25 48 48 H 1.09006 * 109.46960 * 145.28078 * 27 26 25 49 49 H 1.08999 * 109.46865 * 300.00623 * 28 27 26 50 50 H 1.09006 * 109.46912 * 60.00079 * 28 27 26 51 51 H 1.08998 * 109.47266 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3605 2.0355 -1.1956 5 6 2.8203 3.3359 -1.2027 6 6 2.9547 4.0320 -0.0001 7 6 3.4474 5.4259 0.0000 8 8 4.1465 5.8234 0.9114 9 7 3.1214 6.2559 -1.0106 10 6 2.1773 5.8186 -2.0421 11 6 3.7112 7.5953 -1.0779 12 1 4.4398 7.7394 -0.2801 13 6 2.6124 8.6896 -1.0319 14 6 3.2721 9.8730 -1.7710 15 7 4.3348 9.3182 -2.6220 16 6 5.1727 10.0431 -3.4268 17 1 5.9769 9.5499 -3.9527 18 6 4.9885 11.4118 -3.5668 19 7 5.2502 11.9969 -4.7165 20 14 4.3767 12.4245 -2.1213 21 1 4.4029 13.8653 -2.4800 22 1 2.9864 12.0225 -1.7885 23 1 5.2543 12.1908 -0.9464 24 6 4.3448 7.8518 -2.4704 25 6 2.6274 3.4043 1.2027 26 6 2.1627 2.1051 1.1952 27 6 1.8025 1.4280 2.4924 28 6 2.9992 0.6175 2.9942 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.2557 1.4960 -2.1253 35 1 3.0757 3.8146 -2.1364 36 1 2.7128 5.2656 -2.8139 37 1 1.4207 5.1753 -1.5929 38 1 1.6961 6.6897 -2.4868 39 1 2.3798 8.9597 -0.0018 40 1 1.7144 8.3607 -1.5550 41 1 3.7004 10.5685 -1.0491 42 1 2.5323 10.3839 -2.3873 43 1 5.4979 11.4626 -5.4873 44 1 3.7471 7.3855 -3.2535 45 1 5.3671 7.4747 -2.4969 46 1 2.7329 3.9360 2.1368 47 1 1.5372 2.1814 3.2341 48 1 0.9546 0.7622 2.3315 49 1 3.2645 -0.1358 2.2525 50 1 3.8472 1.2834 3.1551 51 1 2.7388 0.1282 3.9327 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033717134.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:42 Heat of formation + Delta-G solvation = 21.298047 kcal Electronic energy + Delta-G solvation = -28548.710034 eV Core-core repulsion = 24834.894910 eV Total energy + Delta-G solvation = -3713.815124 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.71343 -39.35267 -37.59125 -35.37799 -34.63995 -33.76866 -32.36259 -30.28299 -29.95074 -29.18140 -28.04964 -27.00163 -25.07173 -24.27266 -23.53152 -21.96751 -21.79654 -20.76248 -20.13374 -19.11120 -17.46418 -17.24275 -16.75587 -16.22511 -15.98483 -15.24689 -15.11978 -14.81725 -14.30301 -14.17055 -14.03948 -13.84749 -13.56955 -13.46862 -13.33856 -13.22604 -13.01869 -12.80428 -12.67538 -12.54368 -12.30906 -12.04405 -12.00112 -11.76035 -11.63603 -11.48064 -11.33804 -11.09195 -11.04222 -10.99935 -10.85397 -10.54605 -10.00113 -9.82944 -9.68901 -9.09097 -9.06755 -8.82884 -8.50020 -8.31493 -7.12289 -6.38369 -3.13353 0.72490 1.12383 2.71098 2.97878 3.45720 3.55389 3.58079 3.74907 4.30283 4.38156 4.46471 4.57373 4.66263 4.67062 4.86144 4.93627 4.94538 4.98319 5.05101 5.09028 5.13105 5.15787 5.22572 5.27192 5.31181 5.38306 5.40232 5.47521 5.49721 5.52614 5.57053 5.60190 5.67734 5.73305 5.78880 5.82532 5.89227 5.90597 5.96657 6.11332 6.16296 6.21437 6.34182 6.41550 6.49196 6.57444 6.65481 6.77413 6.80780 7.44021 7.69861 8.17991 8.33141 9.01458 9.59005 10.25360 11.09561 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.027358 B = 0.002439 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.239260 B =11476.406412 C =11921.030763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.060 4.060 4 C -0.124 4.124 5 C -0.093 4.093 6 C -0.126 4.126 7 C 0.557 3.443 8 O -0.537 6.537 9 N -0.596 5.596 10 C 0.073 3.927 11 C 0.121 3.879 12 H 0.109 0.891 13 C -0.140 4.140 14 C 0.123 3.877 15 N -0.607 5.607 16 C -0.342 4.342 17 H 0.080 0.920 18 C -0.008 4.008 19 N -0.902 5.902 20 Si 1.032 2.968 21 H -0.298 1.298 22 H -0.277 1.277 23 H -0.296 1.296 24 C 0.135 3.865 25 C -0.061 4.061 26 C -0.089 4.089 27 C -0.087 4.087 28 C -0.149 4.149 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.127 0.873 35 H 0.137 0.863 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.029 0.971 42 H 0.046 0.954 43 H 0.265 0.735 44 H 0.030 0.970 45 H 0.045 0.955 46 H 0.130 0.870 47 H 0.072 0.928 48 H 0.076 0.924 49 H 0.056 0.944 50 H 0.058 0.942 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.108 -26.622 10.718 31.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.128 4.128 3 C -0.061 4.061 4 C -0.142 4.142 5 C -0.111 4.111 6 C -0.129 4.129 7 C 0.346 3.654 8 O -0.415 6.415 9 N -0.328 5.328 10 C -0.069 4.069 11 C 0.017 3.983 12 H 0.127 0.873 13 C -0.178 4.178 14 C -0.002 4.002 15 N -0.335 5.335 16 C -0.468 4.468 17 H 0.098 0.902 18 C -0.211 4.211 19 N -0.541 5.541 20 Si 0.864 3.136 21 H -0.226 1.226 22 H -0.204 1.204 23 H -0.224 1.224 24 C 0.008 3.992 25 C -0.079 4.079 26 C -0.089 4.089 27 C -0.124 4.124 28 C -0.206 4.206 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.145 0.855 35 H 0.155 0.845 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.046 0.954 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.048 0.952 45 H 0.063 0.937 46 H 0.148 0.852 47 H 0.091 0.909 48 H 0.094 0.906 49 H 0.075 0.925 50 H 0.077 0.923 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.983 -24.788 11.602 29.877 hybrid contribution 0.474 -1.449 -0.565 1.626 sum -11.510 -26.237 11.036 30.702 Atomic orbital electron populations 1.21763 0.94527 1.01807 1.02415 1.20655 0.96361 0.92625 1.03177 1.19915 0.97518 0.96027 0.92605 1.20969 1.00699 0.94834 0.97656 1.21676 0.97107 0.94635 0.97722 1.19886 1.04171 0.94380 0.94477 1.18393 0.80344 0.85003 0.81677 1.90774 1.38510 1.76882 1.35304 1.47673 1.44634 1.15076 1.25407 1.22059 0.92516 1.01211 0.91150 1.22586 0.95739 0.79398 1.00547 0.87265 1.22958 0.98031 0.96099 1.00746 1.21864 0.91458 0.94173 0.92702 1.44773 1.37350 1.00255 1.51090 1.19943 1.12329 0.92451 1.22055 0.90216 1.25584 0.99750 0.94357 1.01369 1.70931 1.44786 1.39101 0.99240 0.84479 0.76813 0.75795 0.76552 1.22556 1.20440 1.22361 1.21802 0.98330 0.86654 0.92451 1.21071 0.95722 0.93855 0.97300 1.19656 1.00493 0.93853 0.94915 1.20596 0.98789 0.99360 0.93687 1.21778 0.98020 1.00041 1.00780 0.92394 0.92310 0.92358 0.90929 0.90466 0.85540 0.84534 0.92151 0.91025 0.90194 0.91158 0.91075 0.95380 0.93667 0.92550 0.95246 0.93696 0.85234 0.90938 0.90554 0.92466 0.92306 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.72 37.16 0.36 -0.42 16 2 C -0.09 -0.54 5.38 -27.88 -0.15 -0.69 16 3 C -0.06 -0.50 5.14 -104.53 -0.54 -1.04 16 4 C -0.12 -1.06 9.66 -39.64 -0.38 -1.44 16 5 C -0.09 -0.95 7.81 -39.19 -0.31 -1.26 16 6 C -0.13 -1.58 5.17 -104.97 -0.54 -2.12 16 7 C 0.56 8.74 7.37 -12.33 -0.09 8.65 16 8 O -0.54 -10.37 16.22 5.32 0.09 -10.29 16 9 N -0.60 -8.85 2.91 -172.46 -0.50 -9.35 16 10 C 0.07 0.82 7.45 59.85 0.45 1.27 16 11 C 0.12 2.17 3.45 -65.67 -0.23 1.95 16 12 H 0.11 2.19 7.05 -51.93 -0.37 1.82 16 13 C -0.14 -2.44 6.49 -24.90 -0.16 -2.60 16 14 C 0.12 2.73 4.58 -3.06 -0.01 2.72 16 15 N -0.61 -15.10 3.38 -169.93 -0.57 -15.67 16 16 C -0.34 -9.87 10.39 -15.06 -0.16 -10.02 16 17 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 18 C -0.01 -0.25 5.42 -17.43 -0.09 -0.34 16 19 N -0.90 -28.14 13.70 55.49 0.76 -27.38 16 20 Si 1.03 26.30 25.17 -169.99 -4.28 22.02 16 21 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 22 H -0.28 -6.41 5.09 56.52 0.29 -6.12 16 23 H -0.30 -7.45 7.11 56.52 0.40 -7.04 16 24 C 0.13 2.76 6.79 -2.41 -0.02 2.74 16 25 C -0.06 -0.69 9.24 -39.18 -0.36 -1.06 16 26 C -0.09 -0.82 5.13 -104.68 -0.54 -1.35 16 27 C -0.09 -0.61 5.37 -27.89 -0.15 -0.76 16 28 C -0.15 -0.98 9.72 37.16 0.36 -0.62 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.32 6.79 -51.93 -0.35 -0.03 16 32 H 0.07 0.38 8.05 -51.93 -0.42 -0.04 16 33 H 0.08 0.42 5.59 -51.93 -0.29 0.13 16 34 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 35 H 0.14 1.27 5.23 -52.49 -0.27 0.99 16 36 H 0.06 0.59 6.39 -51.93 -0.33 0.26 16 37 H 0.07 0.68 6.50 -51.93 -0.34 0.34 16 38 H 0.08 0.91 6.38 -51.93 -0.33 0.58 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.07 1.10 6.47 -51.93 -0.34 0.76 16 41 H 0.03 0.66 4.72 -51.92 -0.25 0.41 16 42 H 0.05 1.04 6.84 -51.93 -0.36 0.69 16 43 H 0.26 8.14 8.73 -40.82 -0.36 7.79 16 44 H 0.03 0.57 6.97 -51.93 -0.36 0.21 16 45 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.13 1.51 8.00 -52.49 -0.42 1.09 16 47 H 0.07 0.49 8.05 -51.92 -0.42 0.08 16 48 H 0.08 0.44 5.59 -51.93 -0.29 0.15 16 49 H 0.06 0.36 6.79 -51.93 -0.35 0.01 16 50 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 384.05 15.07 5.79 5.79 Total: -1.00 -33.86 384.05 -9.41 -43.26 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -8.13 Total: -1.98 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -2.56 Total: -6.40 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -0.32 Total: -52.41 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 26.30 SS G_CDS: -4.28 Total: 22.02 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.86 -9.41 -43.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033717134.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.562 kcal (2) G-P(sol) polarization free energy of solvation -33.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds