Wall clock time and date at job start Tue Mar 31 2020 16:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50704 * 109.46613 * 2 1 4 4 C 1.38380 * 119.85544 * 264.99613 * 3 2 1 5 5 C 1.37930 * 120.14915 * 179.97438 * 4 3 2 6 6 C 1.39598 * 119.85141 * 0.02828 * 5 4 3 7 7 C 1.47843 * 120.14759 * 179.97438 * 6 5 4 8 8 O 1.21554 * 120.00373 * 215.02362 * 7 6 5 9 9 N 1.34777 * 119.99935 * 35.01831 * 7 6 5 10 10 C 1.46507 * 119.99995 * 5.81770 * 9 7 6 11 11 C 1.46504 * 120.00397 * 185.82129 * 9 7 6 12 12 H 1.09001 * 110.88214 * 3.87776 * 11 9 7 13 13 C 1.55148 * 111.00205 * 240.00208 * 11 9 7 14 14 C 1.54328 * 102.94097 * 206.42209 * 13 11 9 15 15 N 1.47021 * 107.27024 * 22.18685 * 14 13 11 16 16 C 1.36938 * 125.64863 * 181.02391 * 15 14 13 17 17 H 1.07997 * 120.00209 * 174.92318 * 16 15 14 18 18 C 1.38818 * 119.99942 * 354.92289 * 16 15 14 19 19 N 1.31620 * 119.99962 * 214.20631 * 18 16 15 20 20 Si 1.86798 * 119.99666 * 34.48053 * 18 16 15 21 21 H 1.48498 * 109.46749 * 173.99014 * 20 18 16 22 22 H 1.48500 * 109.47279 * 293.98997 * 20 18 16 23 23 H 1.48502 * 109.47122 * 53.99404 * 20 18 16 24 24 C 1.47427 * 108.70220 * 1.29334 * 15 14 13 25 25 C 1.39560 * 119.71000 * 0.25141 * 6 5 4 26 26 C 1.37984 * 119.85104 * 359.44629 * 25 6 5 27 27 C 1.50695 * 119.92513 * 180.29654 * 26 25 6 28 28 C 1.52998 * 109.47528 * 265.27969 * 27 26 25 29 29 H 1.08993 * 109.47262 * 60.00250 * 1 2 3 30 30 H 1.08998 * 109.46616 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47178 * 299.99573 * 1 2 3 32 32 H 1.08996 * 109.47178 * 240.00426 * 2 1 3 33 33 H 1.08993 * 109.47262 * 119.99749 * 2 1 3 34 34 H 1.08003 * 119.92309 * 0.02562 * 4 3 2 35 35 H 1.07995 * 120.07829 * 180.02562 * 5 4 3 36 36 H 1.09003 * 109.46818 * 274.70531 * 10 9 7 37 37 H 1.09002 * 109.47046 * 34.70258 * 10 9 7 38 38 H 1.08997 * 109.46738 * 154.70088 * 10 9 7 39 39 H 1.09000 * 110.72708 * 88.05595 * 13 11 9 40 40 H 1.09004 * 110.87523 * 324.84985 * 13 11 9 41 41 H 1.09008 * 109.87957 * 262.77457 * 14 13 11 42 42 H 1.08999 * 109.88366 * 141.61049 * 14 13 11 43 43 H 0.97001 * 119.99783 * 5.28128 * 19 18 16 44 44 H 1.08998 * 110.36421 * 94.48206 * 24 15 14 45 45 H 1.08993 * 110.36245 * 216.79976 * 24 15 14 46 46 H 1.08002 * 120.07224 * 179.75569 * 25 6 5 47 47 H 1.09008 * 109.47407 * 25.28292 * 27 26 25 48 48 H 1.09006 * 109.46960 * 145.28078 * 27 26 25 49 49 H 1.08999 * 109.46865 * 300.00623 * 28 27 26 50 50 H 1.09006 * 109.46912 * 60.00079 * 28 27 26 51 51 H 1.08998 * 109.47266 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3605 2.0355 -1.1956 5 6 2.8203 3.3359 -1.2027 6 6 2.9547 4.0320 -0.0001 7 6 3.4474 5.4259 0.0000 8 8 4.1465 5.8234 0.9114 9 7 3.1214 6.2559 -1.0106 10 6 2.1773 5.8186 -2.0421 11 6 3.7112 7.5953 -1.0779 12 1 4.4398 7.7394 -0.2801 13 6 2.6124 8.6896 -1.0319 14 6 3.2721 9.8730 -1.7710 15 7 4.3348 9.3182 -2.6220 16 6 5.1727 10.0431 -3.4268 17 1 5.9769 9.5499 -3.9527 18 6 4.9885 11.4118 -3.5668 19 7 5.2502 11.9969 -4.7165 20 14 4.3767 12.4245 -2.1213 21 1 4.4029 13.8653 -2.4800 22 1 2.9864 12.0225 -1.7885 23 1 5.2543 12.1908 -0.9464 24 6 4.3448 7.8518 -2.4704 25 6 2.6274 3.4043 1.2027 26 6 2.1627 2.1051 1.1952 27 6 1.8025 1.4280 2.4924 28 6 2.9992 0.6175 2.9942 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.2557 1.4960 -2.1253 35 1 3.0757 3.8146 -2.1364 36 1 2.7128 5.2656 -2.8139 37 1 1.4207 5.1753 -1.5929 38 1 1.6961 6.6897 -2.4868 39 1 2.3798 8.9597 -0.0018 40 1 1.7144 8.3607 -1.5550 41 1 3.7004 10.5685 -1.0491 42 1 2.5323 10.3839 -2.3873 43 1 5.4979 11.4626 -5.4873 44 1 3.7471 7.3855 -3.2535 45 1 5.3671 7.4747 -2.4969 46 1 2.7329 3.9360 2.1368 47 1 1.5372 2.1814 3.2341 48 1 0.9546 0.7622 2.3315 49 1 3.2645 -0.1358 2.2525 50 1 3.8472 1.2834 3.1551 51 1 2.7388 0.1282 3.9327 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033717134.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:41 Heat of formation + Delta-G solvation = 1.330980 kcal Electronic energy + Delta-G solvation = -28549.575871 eV Core-core repulsion = 24834.894910 eV Total energy + Delta-G solvation = -3714.680961 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.73177 -40.35924 -39.11593 -36.59580 -35.61039 -34.35547 -34.33606 -31.55288 -30.89874 -30.37906 -29.41207 -28.07271 -26.19710 -25.37155 -24.62304 -22.94187 -22.51866 -22.45416 -21.32748 -20.31240 -19.56201 -18.35150 -17.83400 -17.09888 -17.08107 -16.69579 -16.20622 -15.89994 -15.59821 -15.25336 -15.13276 -14.82283 -14.67537 -14.57632 -14.39857 -14.19798 -14.10919 -14.05589 -13.83964 -13.49779 -13.35353 -13.11805 -13.01941 -12.98555 -12.71090 -12.50538 -12.41663 -12.36209 -12.11689 -12.03885 -11.88569 -11.70993 -11.57721 -11.43868 -11.07663 -10.94786 -10.48285 -9.89055 -9.75361 -9.53831 -9.19419 -8.71216 -5.39035 -0.10338 0.38786 1.42226 1.52031 1.63689 1.71562 1.80406 2.54517 2.73387 2.92287 3.34386 3.39988 3.70409 3.72481 3.77279 3.84450 3.92843 3.98983 4.13145 4.16224 4.21958 4.29766 4.36056 4.40924 4.48016 4.54274 4.55126 4.58504 4.60618 4.67885 4.77388 4.79230 4.81980 4.87596 4.89832 5.02240 5.04238 5.06801 5.10667 5.12729 5.13165 5.22569 5.33394 5.35038 5.41301 5.47774 5.51218 5.58373 5.67899 5.96424 6.06468 6.27589 6.78201 6.98856 7.43819 8.09749 8.77654 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.027358 B = 0.002439 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.239260 B =11476.406412 C =11921.030763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.055 4.055 4 C -0.121 4.121 5 C -0.092 4.092 6 C -0.146 4.146 7 C 0.554 3.446 8 O -0.585 6.585 9 N -0.593 5.593 10 C 0.067 3.933 11 C 0.134 3.866 12 H 0.084 0.916 13 C -0.124 4.124 14 C 0.115 3.885 15 N -0.628 5.628 16 C -0.336 4.336 17 H 0.049 0.951 18 C -0.061 4.061 19 N -0.935 5.935 20 Si 1.073 2.927 21 H -0.306 1.306 22 H -0.237 1.237 23 H -0.293 1.293 24 C 0.135 3.865 25 C -0.076 4.076 26 C -0.090 4.090 27 C -0.086 4.086 28 C -0.147 4.147 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.154 0.846 35 H 0.146 0.854 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.022 0.978 42 H 0.041 0.959 43 H 0.253 0.747 44 H 0.050 0.950 45 H 0.028 0.972 46 H 0.116 0.884 47 H 0.070 0.930 48 H 0.094 0.906 49 H 0.062 0.938 50 H 0.041 0.959 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.960 -29.604 11.510 35.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.055 4.055 4 C -0.139 4.139 5 C -0.111 4.111 6 C -0.149 4.149 7 C 0.345 3.655 8 O -0.466 6.466 9 N -0.323 5.323 10 C -0.074 4.074 11 C 0.029 3.971 12 H 0.102 0.898 13 C -0.163 4.163 14 C -0.010 4.010 15 N -0.356 5.356 16 C -0.464 4.464 17 H 0.067 0.933 18 C -0.257 4.257 19 N -0.577 5.577 20 Si 0.900 3.100 21 H -0.234 1.234 22 H -0.161 1.161 23 H -0.221 1.221 24 C 0.009 3.991 25 C -0.095 4.095 26 C -0.090 4.090 27 C -0.123 4.123 28 C -0.205 4.205 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.172 0.828 35 H 0.163 0.837 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.039 0.961 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.047 0.953 46 H 0.134 0.866 47 H 0.089 0.911 48 H 0.112 0.888 49 H 0.081 0.919 50 H 0.060 0.940 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.880 -27.830 12.390 33.904 hybrid contribution 1.413 -0.710 -0.852 1.796 sum -13.467 -28.540 11.538 33.601 Atomic orbital electron populations 1.21756 0.93806 1.02657 1.02162 1.20731 0.96831 0.90912 1.04243 1.20282 0.95983 0.97137 0.92086 1.21297 0.99485 0.94166 0.98929 1.21773 0.96960 0.95302 0.97025 1.19691 1.06522 0.92811 0.95911 1.18954 0.79444 0.86177 0.80901 1.90741 1.40696 1.77983 1.37203 1.47660 1.44780 1.13704 1.26189 1.22337 0.92435 1.01901 0.90690 1.22105 0.95629 0.81589 0.97756 0.89818 1.22894 0.98183 0.93676 1.01501 1.21993 0.90612 0.96077 0.92324 1.44814 1.37387 1.02063 1.51300 1.19818 1.11874 0.92867 1.21854 0.93259 1.26767 1.00530 0.95788 1.02641 1.71026 1.47704 1.39166 0.99774 0.83953 0.78801 0.73822 0.73459 1.23408 1.16108 1.22120 1.21897 0.98105 0.84391 0.94696 1.21093 0.96852 0.94975 0.96556 1.19879 0.99763 0.92983 0.96407 1.20650 0.99510 0.99541 0.92640 1.21769 0.97191 0.99775 1.01728 0.92621 0.90956 0.92677 0.89644 0.89727 0.82824 0.83654 0.90502 0.88850 0.89900 0.89370 0.88277 0.96067 0.94067 0.93836 0.93241 0.95348 0.86638 0.91126 0.88796 0.91920 0.94011 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.72 71.98 0.70 -0.32 16 2 C -0.09 -0.73 5.38 29.85 0.16 -0.57 16 3 C -0.05 -0.74 5.14 -19.81 -0.10 -0.85 16 4 C -0.12 -1.67 9.66 22.23 0.21 -1.46 16 5 C -0.09 -1.67 7.81 22.53 0.18 -1.49 16 6 C -0.15 -3.53 5.17 -20.09 -0.10 -3.64 16 7 C 0.55 17.32 7.37 86.79 0.64 17.96 16 8 O -0.59 -23.32 16.22 -3.89 -0.06 -23.38 16 9 N -0.59 -16.82 2.91 -817.80 -2.38 -19.20 16 10 C 0.07 1.32 7.45 127.77 0.95 2.27 16 11 C 0.13 4.71 3.45 46.45 0.16 4.87 16 12 H 0.08 3.40 7.05 -2.39 -0.02 3.39 16 13 C -0.12 -4.03 6.49 31.78 0.21 -3.83 16 14 C 0.11 4.89 4.58 86.73 0.40 5.29 16 15 N -0.63 -31.22 3.38 -691.55 -2.34 -33.56 16 16 C -0.34 -19.93 10.39 84.03 0.87 -19.05 16 17 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16 18 C -0.06 -3.66 5.42 84.86 0.46 -3.19 16 19 N -0.94 -60.06 13.70 21.65 0.30 -59.77 16 20 Si 1.07 53.37 25.17 68.60 1.73 55.10 16 21 H -0.31 -15.53 7.11 99.48 0.71 -14.82 16 22 H -0.24 -10.19 5.09 99.48 0.51 -9.68 16 23 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 24 C 0.14 5.50 6.79 86.93 0.59 6.09 16 25 C -0.08 -1.71 9.24 22.53 0.21 -1.50 16 26 C -0.09 -1.50 5.13 -19.90 -0.10 -1.60 16 27 C -0.09 -1.04 5.37 29.85 0.16 -0.88 16 28 C -0.15 -1.67 9.72 71.98 0.70 -0.97 16 29 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.05 0.42 6.79 -2.39 -0.02 0.41 16 32 H 0.08 0.53 8.05 -2.39 -0.02 0.51 16 33 H 0.08 0.60 5.59 -2.39 -0.01 0.59 16 34 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 35 H 0.15 2.28 5.23 -2.91 -0.02 2.27 16 36 H 0.08 1.27 6.39 -2.39 -0.02 1.26 16 37 H 0.09 1.46 6.50 -2.39 -0.02 1.45 16 38 H 0.08 1.60 6.38 -2.39 -0.02 1.59 16 39 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.10 2.69 6.47 -2.38 -0.02 2.67 16 41 H 0.02 0.96 4.72 -2.38 -0.01 0.95 16 42 H 0.04 1.80 6.84 -2.39 -0.02 1.79 16 43 H 0.25 16.23 8.73 -92.71 -0.81 15.42 16 44 H 0.05 1.84 6.97 -2.39 -0.02 1.82 16 45 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.12 2.83 8.00 -2.91 -0.02 2.80 16 47 H 0.07 0.88 8.05 -2.38 -0.02 0.86 16 48 H 0.09 0.81 5.59 -2.38 -0.01 0.80 16 49 H 0.06 0.64 6.79 -2.39 -0.02 0.62 16 50 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 51 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -76.81 384.05 4.22 -72.59 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.69 Total: 11.10 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 6.29 Total: -2.87 kcal Atomic # 7 Polarization: -108.11 SS G_CDS: -4.42 Total: -112.53 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.06 Total: -23.38 kcal Atomic # 14 Polarization: 53.37 SS G_CDS: 1.73 Total: 55.10 kcal Total: -76.81 4.22 -72.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033717134.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.923 kcal (2) G-P(sol) polarization free energy of solvation -76.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds