Wall clock time and date at job start Tue Mar 31 2020 16:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47101 * 2 1 4 4 C 1.38261 * 120.00012 * 265.24847 * 3 2 1 5 5 C 1.38205 * 120.00265 * 180.29445 * 4 3 2 6 6 C 1.38263 * 120.00102 * 359.70792 * 5 4 3 7 7 C 1.38213 * 119.99529 * 0.02562 * 6 5 4 8 8 C 1.38212 * 120.00341 * 84.99676 * 3 2 1 9 9 C 1.50701 * 119.99865 * 0.02562 * 8 3 2 10 10 C 1.50701 * 109.47087 * 84.72545 * 9 8 3 11 11 O 1.21277 * 120.00365 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99992 * 180.02562 * 10 9 8 13 13 C 1.46493 * 120.00441 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.18411 * 34.55847 * 13 12 10 15 15 C 1.47089 * 109.33307 * 154.12845 * 13 12 10 16 16 C 1.52565 * 114.32525 * 183.06026 * 15 13 12 17 17 C 1.50887 * 109.36473 * 274.98993 * 16 15 13 18 18 C 1.53947 * 110.09355 * 91.88556 * 17 16 15 19 19 N 1.47583 * 112.12229 * 319.45195 * 18 17 16 20 20 C 1.36936 * 118.62322 * 137.87312 * 19 18 17 21 21 H 1.07998 * 119.99825 * 206.49894 * 20 19 18 22 22 C 1.38816 * 120.00147 * 26.50043 * 20 19 18 23 23 N 1.31620 * 120.00010 * 15.71271 * 22 20 19 24 24 Si 1.86801 * 120.00173 * 195.70570 * 22 20 19 25 25 H 1.48498 * 109.46655 * 90.00102 * 24 22 20 26 26 H 1.48493 * 109.47402 * 210.00226 * 24 22 20 27 27 H 1.48497 * 109.46980 * 330.00537 * 24 22 20 28 28 C 1.44576 * 122.73176 * 317.82452 * 19 18 17 29 29 H 1.09001 * 109.47198 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47196 * 300.00365 * 1 2 3 31 31 H 1.08999 * 109.47159 * 60.00191 * 1 2 3 32 32 H 1.09000 * 109.47893 * 239.99671 * 2 1 3 33 33 H 1.09008 * 109.47153 * 119.99571 * 2 1 3 34 34 H 1.07997 * 119.99982 * 0.02616 * 4 3 2 35 35 H 1.08002 * 120.00361 * 179.73232 * 5 4 3 36 36 H 1.08001 * 120.00688 * 179.97438 * 6 5 4 37 37 H 1.08010 * 119.99957 * 179.97438 * 7 6 5 38 38 H 1.08994 * 109.46815 * 324.72744 * 9 8 3 39 39 H 1.09000 * 109.47068 * 204.72495 * 9 8 3 40 40 H 0.97006 * 119.99442 * 359.97438 * 12 10 9 41 41 H 1.08996 * 108.51420 * 304.31820 * 15 13 12 42 42 H 1.08999 * 108.50739 * 61.81154 * 15 13 12 43 43 H 1.09002 * 109.49257 * 34.95830 * 16 15 13 44 44 H 1.09004 * 109.49194 * 155.00137 * 16 15 13 45 45 H 1.08996 * 109.36929 * 212.07878 * 17 16 15 46 46 H 1.08996 * 109.36299 * 331.82342 * 17 16 15 47 47 H 1.09004 * 108.94812 * 80.12255 * 18 17 16 48 48 H 1.08993 * 108.94943 * 198.75573 * 18 17 16 49 49 H 0.97000 * 120.00099 * 179.97438 * 23 22 20 50 50 H 1.08998 * 109.44873 * 330.73458 * 28 19 18 51 51 H 1.09000 * 109.44670 * 210.79313 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3562 2.0395 -1.1933 5 6 2.8227 3.3405 -1.1928 6 6 2.9597 4.0254 0.0004 7 6 2.6306 3.4087 1.1928 8 6 2.1642 2.1072 1.1924 9 6 1.8063 1.4346 2.4926 10 6 2.9837 0.6325 2.9840 11 8 4.0124 0.6097 2.3420 12 7 2.8936 -0.0595 4.1371 13 6 4.0383 -0.8387 4.6151 14 1 4.9600 -0.3215 4.3487 15 6 3.9599 -0.9718 6.0779 16 6 5.1412 -1.7047 6.7064 17 6 4.8938 -3.1921 6.6516 18 6 5.4975 -3.7816 5.3640 19 7 5.2789 -2.9062 4.1962 20 6 6.3083 -2.7226 3.3120 21 1 6.3612 -1.8175 2.7252 22 6 7.2839 -3.6998 3.1701 23 7 7.0723 -4.9133 3.6337 24 14 8.8971 -3.2927 2.3207 25 1 9.8780 -2.8110 3.3262 26 1 9.4273 -4.5098 1.6555 27 1 8.6684 -2.2334 1.3055 28 6 4.0228 -2.2354 3.9463 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.2489 1.5047 -2.1254 35 1 3.0798 3.8223 -2.1246 36 1 3.3246 5.0419 0.0009 37 1 2.7380 3.9436 2.1250 38 1 0.9551 0.7720 2.3365 39 1 1.5471 2.1908 3.2335 40 1 2.0709 -0.0409 4.6507 41 1 3.8999 0.0255 6.5134 42 1 3.0459 -1.5104 6.3279 43 1 6.0514 -1.4669 6.1558 44 1 5.2524 -1.3922 7.7448 45 1 5.3546 -3.6674 7.5175 46 1 3.8203 -3.3806 6.6645 47 1 6.5693 -3.9201 5.5068 48 1 5.0397 -4.7516 5.1703 49 1 7.7539 -5.5963 3.5342 50 1 3.2066 -2.8272 4.3607 51 1 3.8795 -2.1218 2.8718 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034268767.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:25 Heat of formation + Delta-G solvation = -4.798037 kcal Electronic energy + Delta-G solvation = -29341.006092 eV Core-core repulsion = 25626.059356 eV Total energy + Delta-G solvation = -3714.946735 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.20049 -39.01556 -37.50709 -34.51166 -34.28407 -33.17813 -32.56335 -30.88691 -30.14703 -29.47180 -27.49862 -25.87299 -24.23743 -23.82945 -23.07783 -22.01908 -20.75509 -20.16854 -19.76500 -19.12569 -16.83426 -16.56040 -16.46143 -16.08356 -15.83056 -15.06456 -14.93552 -14.45492 -14.17431 -13.91385 -13.72018 -13.55895 -13.46146 -13.18341 -13.07536 -12.90297 -12.55995 -12.50168 -12.13906 -12.07324 -11.94700 -11.78113 -11.47125 -11.29802 -11.01390 -10.88835 -10.78391 -10.73263 -10.67113 -10.52749 -10.08160 -10.07692 -9.69645 -9.61417 -9.53642 -9.47646 -8.74688 -8.73346 -8.52290 -8.27048 -6.58852 -5.70148 -3.13431 1.37685 1.45344 3.00544 3.44863 3.45930 3.51610 3.56645 3.89733 4.60109 4.63060 4.74971 4.90602 4.96138 5.12719 5.14242 5.21094 5.28075 5.33402 5.36396 5.40030 5.48471 5.49010 5.56770 5.57425 5.64158 5.79027 5.86996 5.91459 6.01015 6.04012 6.07178 6.13154 6.17704 6.25224 6.34191 6.41984 6.50743 6.53489 6.62416 6.65822 6.70426 6.78068 6.79748 6.87704 6.96618 7.05447 7.16118 7.48768 7.76360 7.88825 7.97072 8.56406 8.64571 9.33317 9.98462 10.41932 11.37480 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011755 B = 0.003648 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.381869 B = 7672.753943 C = 8731.184497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.059 4.059 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.127 4.127 7 C -0.106 4.106 8 C -0.060 4.060 9 C -0.107 4.107 10 C 0.507 3.493 11 O -0.518 6.518 12 N -0.727 5.727 13 C 0.114 3.886 14 H 0.086 0.914 15 C -0.111 4.111 16 C -0.101 4.101 17 C -0.143 4.143 18 C 0.177 3.823 19 N -0.584 5.584 20 C -0.253 4.253 21 H 0.069 0.931 22 C 0.005 3.995 23 N -0.907 5.907 24 Si 0.898 3.102 25 H -0.288 1.288 26 H -0.292 1.292 27 H -0.278 1.278 28 C 0.160 3.840 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.390 0.610 41 H 0.046 0.954 42 H 0.052 0.948 43 H 0.076 0.924 44 H 0.047 0.953 45 H 0.052 0.948 46 H 0.044 0.956 47 H 0.075 0.925 48 H 0.024 0.976 49 H 0.252 0.748 50 H 0.029 0.971 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.177 13.688 -0.702 20.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 C -0.060 4.060 4 C -0.137 4.137 5 C -0.138 4.138 6 C -0.145 4.145 7 C -0.124 4.124 8 C -0.060 4.060 9 C -0.147 4.147 10 C 0.292 3.708 11 O -0.393 6.393 12 N -0.378 5.378 13 C 0.008 3.992 14 H 0.104 0.896 15 C -0.149 4.149 16 C -0.139 4.139 17 C -0.182 4.182 18 C 0.052 3.948 19 N -0.305 5.305 20 C -0.383 4.383 21 H 0.087 0.913 22 C -0.193 4.193 23 N -0.552 5.552 24 Si 0.728 3.272 25 H -0.215 1.215 26 H -0.219 1.219 27 H -0.203 1.203 28 C 0.030 3.970 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.119 0.881 39 H 0.114 0.886 40 H 0.223 0.777 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.095 0.905 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.093 0.907 48 H 0.042 0.958 49 H 0.062 0.938 50 H 0.048 0.952 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.305 13.481 -1.183 19.692 hybrid contribution 0.549 0.205 -0.102 0.595 sum -13.756 13.686 -1.285 19.447 Atomic orbital electron populations 1.21761 0.94849 1.01790 1.01850 1.20590 0.95723 0.92844 1.03686 1.19678 0.98068 0.95621 0.92585 1.20980 1.00156 0.95148 0.97406 1.21073 0.99875 0.94909 0.97944 1.21025 1.00974 0.99898 0.92607 1.20940 0.98831 0.94582 0.98032 1.19115 0.99818 0.93886 0.93182 1.20769 0.98108 0.99990 0.95840 1.20363 0.89319 0.79900 0.81215 1.90793 1.30757 1.62399 1.55325 1.46197 1.17261 1.50173 1.24185 1.21230 0.88710 0.95369 0.93900 0.89567 1.20564 0.99348 0.99703 0.95250 1.20830 0.98885 0.95652 0.98533 1.22079 1.00024 0.95677 1.00440 1.21044 1.00494 0.90889 0.82416 1.43580 1.08931 1.53975 1.24000 1.19327 1.01470 1.00327 1.17187 0.91310 1.24995 0.99976 0.94651 0.99711 1.70079 1.33401 1.01154 1.50541 0.86333 0.84236 0.77253 0.79343 1.21512 1.21857 1.20319 1.20896 0.88667 0.89736 0.97731 0.92237 0.92671 0.92650 0.90872 0.90603 0.86275 0.86389 0.86372 0.86415 0.88062 0.88557 0.77711 0.93539 0.92916 0.90502 0.93473 0.92948 0.93732 0.90661 0.95794 0.93832 0.95227 0.93440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.72 37.15 0.36 -1.00 16 2 C -0.09 -1.11 5.38 -27.89 -0.15 -1.26 16 3 C -0.06 -0.78 5.13 -104.62 -0.54 -1.32 16 4 C -0.12 -1.47 9.68 -39.59 -0.38 -1.85 16 5 C -0.12 -1.39 10.05 -39.58 -0.40 -1.78 16 6 C -0.13 -1.47 10.05 -39.58 -0.40 -1.87 16 7 C -0.11 -1.31 9.68 -39.58 -0.38 -1.69 16 8 C -0.06 -0.78 4.37 -104.62 -0.46 -1.23 16 9 C -0.11 -1.21 5.16 -29.03 -0.15 -1.36 16 10 C 0.51 7.90 6.97 -10.98 -0.08 7.83 16 11 O -0.52 -10.89 15.68 5.56 0.09 -10.80 16 12 N -0.73 -10.31 5.05 -55.63 -0.28 -10.59 16 13 C 0.11 2.05 2.35 -69.79 -0.16 1.89 16 14 H 0.09 1.89 7.55 -51.93 -0.39 1.50 16 15 C -0.11 -1.71 4.55 -29.79 -0.14 -1.84 16 16 C -0.10 -1.73 5.51 -28.01 -0.15 -1.88 16 17 C -0.14 -2.63 5.71 -27.30 -0.16 -2.79 16 18 C 0.18 4.19 4.67 -2.96 -0.01 4.17 16 19 N -0.58 -14.61 2.27 -172.11 -0.39 -15.00 16 20 C -0.25 -7.17 9.44 -15.06 -0.14 -7.31 16 21 H 0.07 2.03 7.88 -52.49 -0.41 1.62 16 22 C 0.00 0.13 4.87 -17.43 -0.08 0.05 16 23 N -0.91 -26.63 11.01 55.49 0.61 -26.02 16 24 Si 0.90 22.73 29.58 -169.99 -5.03 17.70 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 28 C 0.16 3.41 5.24 -4.09 -0.02 3.39 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.47 6.80 -51.93 -0.35 0.12 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.89 8.05 -51.93 -0.42 0.47 16 33 H 0.08 1.06 6.40 -51.92 -0.33 0.73 16 34 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 38 H 0.10 0.95 5.63 -51.93 -0.29 0.66 16 39 H 0.10 0.83 8.05 -51.93 -0.42 0.41 16 40 H 0.39 4.06 8.58 -40.82 -0.35 3.71 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.74 7.36 -51.93 -0.38 0.36 16 43 H 0.08 1.56 7.48 -51.93 -0.39 1.17 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.04 0.76 7.32 -51.93 -0.38 0.38 16 47 H 0.08 2.00 6.33 -51.93 -0.33 1.67 16 48 H 0.02 0.62 8.03 -51.93 -0.42 0.20 16 49 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 50 H 0.03 0.59 8.07 -51.93 -0.42 0.17 16 51 H 0.05 1.13 7.98 -51.93 -0.41 0.71 16 LS Contribution 396.21 15.07 5.97 5.97 Total: -1.00 -33.18 396.21 -11.11 -44.29 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -8.64 Total: 4.31 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -3.44 Total: -9.86 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: -0.06 Total: -51.61 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.03 Total: 17.70 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.18 -11.11 -44.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034268767.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.493 kcal (2) G-P(sol) polarization free energy of solvation -33.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds