Wall clock time and date at job start Tue Mar 31 2020 16:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47101 * 2 1 4 4 C 1.38261 * 120.00012 * 265.24847 * 3 2 1 5 5 C 1.38205 * 120.00265 * 180.29445 * 4 3 2 6 6 C 1.38263 * 120.00102 * 359.70792 * 5 4 3 7 7 C 1.38213 * 119.99529 * 0.02562 * 6 5 4 8 8 C 1.38212 * 120.00341 * 84.99676 * 3 2 1 9 9 C 1.50701 * 119.99865 * 0.02562 * 8 3 2 10 10 C 1.50701 * 109.47087 * 84.72545 * 9 8 3 11 11 O 1.21277 * 120.00365 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99992 * 180.02562 * 10 9 8 13 13 C 1.46493 * 120.00441 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.18411 * 34.55847 * 13 12 10 15 15 C 1.47089 * 109.33307 * 154.12845 * 13 12 10 16 16 C 1.52565 * 114.32525 * 183.06026 * 15 13 12 17 17 C 1.50887 * 109.36473 * 274.98993 * 16 15 13 18 18 C 1.53947 * 110.09355 * 91.88556 * 17 16 15 19 19 N 1.47583 * 112.12229 * 319.45195 * 18 17 16 20 20 C 1.36936 * 118.62322 * 137.87312 * 19 18 17 21 21 H 1.07998 * 119.99825 * 206.49894 * 20 19 18 22 22 C 1.38816 * 120.00147 * 26.50043 * 20 19 18 23 23 N 1.31620 * 120.00010 * 15.71271 * 22 20 19 24 24 Si 1.86801 * 120.00173 * 195.70570 * 22 20 19 25 25 H 1.48498 * 109.46655 * 90.00102 * 24 22 20 26 26 H 1.48493 * 109.47402 * 210.00226 * 24 22 20 27 27 H 1.48497 * 109.46980 * 330.00537 * 24 22 20 28 28 C 1.44576 * 122.73176 * 317.82452 * 19 18 17 29 29 H 1.09001 * 109.47198 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47196 * 300.00365 * 1 2 3 31 31 H 1.08999 * 109.47159 * 60.00191 * 1 2 3 32 32 H 1.09000 * 109.47893 * 239.99671 * 2 1 3 33 33 H 1.09008 * 109.47153 * 119.99571 * 2 1 3 34 34 H 1.07997 * 119.99982 * 0.02616 * 4 3 2 35 35 H 1.08002 * 120.00361 * 179.73232 * 5 4 3 36 36 H 1.08001 * 120.00688 * 179.97438 * 6 5 4 37 37 H 1.08010 * 119.99957 * 179.97438 * 7 6 5 38 38 H 1.08994 * 109.46815 * 324.72744 * 9 8 3 39 39 H 1.09000 * 109.47068 * 204.72495 * 9 8 3 40 40 H 0.97006 * 119.99442 * 359.97438 * 12 10 9 41 41 H 1.08996 * 108.51420 * 304.31820 * 15 13 12 42 42 H 1.08999 * 108.50739 * 61.81154 * 15 13 12 43 43 H 1.09002 * 109.49257 * 34.95830 * 16 15 13 44 44 H 1.09004 * 109.49194 * 155.00137 * 16 15 13 45 45 H 1.08996 * 109.36929 * 212.07878 * 17 16 15 46 46 H 1.08996 * 109.36299 * 331.82342 * 17 16 15 47 47 H 1.09004 * 108.94812 * 80.12255 * 18 17 16 48 48 H 1.08993 * 108.94943 * 198.75573 * 18 17 16 49 49 H 0.97000 * 120.00099 * 179.97438 * 23 22 20 50 50 H 1.08998 * 109.44873 * 330.73458 * 28 19 18 51 51 H 1.09000 * 109.44670 * 210.79313 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3562 2.0395 -1.1933 5 6 2.8227 3.3405 -1.1928 6 6 2.9597 4.0254 0.0004 7 6 2.6306 3.4087 1.1928 8 6 2.1642 2.1072 1.1924 9 6 1.8063 1.4346 2.4926 10 6 2.9837 0.6325 2.9840 11 8 4.0124 0.6097 2.3420 12 7 2.8936 -0.0595 4.1371 13 6 4.0383 -0.8387 4.6151 14 1 4.9600 -0.3215 4.3487 15 6 3.9599 -0.9718 6.0779 16 6 5.1412 -1.7047 6.7064 17 6 4.8938 -3.1921 6.6516 18 6 5.4975 -3.7816 5.3640 19 7 5.2789 -2.9062 4.1962 20 6 6.3083 -2.7226 3.3120 21 1 6.3612 -1.8175 2.7252 22 6 7.2839 -3.6998 3.1701 23 7 7.0723 -4.9133 3.6337 24 14 8.8971 -3.2927 2.3207 25 1 9.8780 -2.8110 3.3262 26 1 9.4273 -4.5098 1.6555 27 1 8.6684 -2.2334 1.3055 28 6 4.0228 -2.2354 3.9463 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.2489 1.5047 -2.1254 35 1 3.0798 3.8223 -2.1246 36 1 3.3246 5.0419 0.0009 37 1 2.7380 3.9436 2.1250 38 1 0.9551 0.7720 2.3365 39 1 1.5471 2.1908 3.2335 40 1 2.0709 -0.0409 4.6507 41 1 3.8999 0.0255 6.5134 42 1 3.0459 -1.5104 6.3279 43 1 6.0514 -1.4669 6.1558 44 1 5.2524 -1.3922 7.7448 45 1 5.3546 -3.6674 7.5175 46 1 3.8203 -3.3806 6.6645 47 1 6.5693 -3.9201 5.5068 48 1 5.0397 -4.7516 5.1703 49 1 7.7539 -5.5963 3.5342 50 1 3.2066 -2.8272 4.3607 51 1 3.8795 -2.1218 2.8718 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034268767.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:24 Heat of formation + Delta-G solvation = -23.846177 kcal Electronic energy + Delta-G solvation = -29341.832081 eV Core-core repulsion = 25626.059356 eV Total energy + Delta-G solvation = -3715.772725 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.34191 -40.21067 -39.01058 -36.18640 -35.19799 -34.79462 -33.56307 -32.86954 -31.60828 -30.35199 -28.57682 -27.76227 -25.81398 -24.93884 -24.64139 -23.04158 -21.82979 -21.59291 -21.06509 -20.72091 -18.61024 -18.01989 -17.61491 -17.20004 -16.98023 -16.57036 -16.34949 -15.91814 -15.69116 -15.22765 -15.17316 -14.74423 -14.61893 -14.40643 -14.27575 -14.11136 -13.92819 -13.80551 -13.78173 -13.16152 -13.02685 -12.99086 -12.86118 -12.77233 -12.64662 -12.46722 -12.32509 -12.14791 -12.05554 -11.70464 -11.63719 -11.55009 -11.46357 -11.37877 -11.13438 -10.83011 -10.51427 -10.06679 -9.67149 -9.45248 -8.64066 -7.89249 -5.34584 0.44938 0.53259 1.38994 1.39700 1.50032 1.78143 2.27819 2.49747 2.93240 3.23151 3.69356 3.72568 3.86255 3.92956 4.00229 4.09512 4.10724 4.14113 4.29782 4.30261 4.37208 4.44860 4.50024 4.52920 4.54880 4.65978 4.73124 4.73766 4.76600 4.77851 5.00210 5.02840 5.05968 5.08696 5.13798 5.17463 5.24173 5.24617 5.30328 5.37082 5.39676 5.46582 5.60457 5.62055 5.63615 5.69891 5.72411 5.77356 5.82762 6.16814 6.39286 6.73729 7.17193 7.47273 7.94234 8.28208 9.14763 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011755 B = 0.003648 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.381869 B = 7672.753943 C = 8731.184497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 C -0.079 4.079 4 C -0.137 4.137 5 C -0.127 4.127 6 C -0.136 4.136 7 C -0.119 4.119 8 C -0.079 4.079 9 C -0.095 4.095 10 C 0.505 3.495 11 O -0.580 6.580 12 N -0.711 5.711 13 C 0.135 3.865 14 H 0.039 0.961 15 C -0.108 4.108 16 C -0.099 4.099 17 C -0.130 4.130 18 C 0.184 3.816 19 N -0.597 5.597 20 C -0.259 4.259 21 H 0.044 0.956 22 C -0.040 4.040 23 N -0.929 5.929 24 Si 0.954 3.046 25 H -0.280 1.280 26 H -0.287 1.287 27 H -0.283 1.283 28 C 0.161 3.839 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.129 0.871 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.135 0.865 38 H 0.123 0.877 39 H 0.133 0.867 40 H 0.415 0.585 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.036 0.964 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.038 0.962 48 H -0.005 1.005 49 H 0.250 0.750 50 H 0.049 0.951 51 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.369 15.480 0.992 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.127 4.127 3 C -0.079 4.079 4 C -0.155 4.155 5 C -0.145 4.145 6 C -0.154 4.154 7 C -0.137 4.137 8 C -0.080 4.080 9 C -0.134 4.134 10 C 0.293 3.707 11 O -0.459 6.459 12 N -0.364 5.364 13 C 0.028 3.972 14 H 0.058 0.942 15 C -0.145 4.145 16 C -0.137 4.137 17 C -0.169 4.169 18 C 0.060 3.940 19 N -0.319 5.319 20 C -0.390 4.390 21 H 0.062 0.938 22 C -0.236 4.236 23 N -0.576 5.576 24 Si 0.783 3.217 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.209 1.209 28 C 0.032 3.968 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.147 0.853 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.152 0.848 38 H 0.141 0.859 39 H 0.151 0.849 40 H 0.253 0.747 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.055 0.945 44 H 0.101 0.899 45 H 0.089 0.911 46 H 0.085 0.915 47 H 0.057 0.943 48 H 0.013 0.987 49 H 0.059 0.941 50 H 0.067 0.933 51 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -16.566 15.294 0.549 22.553 hybrid contribution 1.218 -0.338 -0.705 1.447 sum -15.348 14.956 -0.156 21.431 Atomic orbital electron populations 1.21717 0.92413 1.02530 1.02814 1.20563 0.97836 0.92299 1.02038 1.19921 0.98696 0.95988 0.93298 1.21248 1.00553 0.95907 0.97765 1.21410 0.99233 0.94703 0.99112 1.21387 1.00546 1.01027 0.92431 1.21273 0.98570 0.94671 0.99137 1.19377 1.00426 0.94453 0.93725 1.20781 0.96273 1.00466 0.95911 1.21180 0.89653 0.79376 0.80518 1.90777 1.33553 1.64504 1.57062 1.45954 1.17247 1.49005 1.24161 1.20633 0.88359 0.92626 0.95603 0.94224 1.20505 0.99731 1.01649 0.92648 1.20814 0.97835 0.94836 1.00211 1.21938 1.00999 0.96468 0.97475 1.20861 0.98493 0.90089 0.84578 1.43715 1.09415 1.54550 1.24235 1.19298 1.02927 0.99301 1.17472 0.93806 1.25584 1.02520 0.94605 1.00894 1.70202 1.34027 1.01646 1.51685 0.85471 0.81058 0.76822 0.78378 1.20698 1.21319 1.20900 1.20979 0.87735 0.91850 0.96204 0.91570 0.91405 0.91952 0.91810 0.92955 0.85306 0.84213 0.84123 0.84756 0.85910 0.84921 0.74746 0.90648 0.89988 0.94536 0.89899 0.91114 0.91459 0.94295 0.98692 0.94064 0.93264 0.97021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.72 71.98 0.70 -1.70 16 2 C -0.09 -2.23 5.38 29.85 0.16 -2.07 16 3 C -0.08 -2.08 5.13 -19.87 -0.10 -2.19 16 4 C -0.14 -3.37 9.68 22.27 0.22 -3.16 16 5 C -0.13 -2.82 10.05 22.27 0.22 -2.59 16 6 C -0.14 -2.98 10.05 22.27 0.22 -2.75 16 7 C -0.12 -2.77 9.68 22.27 0.22 -2.56 16 8 C -0.08 -2.00 4.37 -19.87 -0.09 -2.08 16 9 C -0.10 -1.95 5.16 29.10 0.15 -1.80 16 10 C 0.51 15.50 6.97 87.66 0.61 16.11 16 11 O -0.58 -25.39 15.68 -3.02 -0.05 -25.44 16 12 N -0.71 -18.95 5.05 -448.29 -2.27 -21.21 16 13 C 0.14 4.79 2.35 43.79 0.10 4.89 16 14 H 0.04 1.80 7.55 -2.39 -0.02 1.78 16 15 C -0.11 -2.97 4.55 28.61 0.13 -2.84 16 16 C -0.10 -3.16 5.51 29.76 0.16 -3.00 16 17 C -0.13 -4.53 5.71 30.23 0.17 -4.35 16 18 C 0.18 8.97 4.67 86.49 0.40 9.37 16 19 N -0.60 -31.05 2.27 -698.44 -1.58 -32.64 16 20 C -0.26 -15.46 9.44 84.03 0.79 -14.67 16 21 H 0.04 2.79 7.88 -2.91 -0.02 2.77 16 22 C -0.04 -2.39 4.87 84.86 0.41 -1.98 16 23 N -0.93 -56.62 11.01 21.65 0.24 -56.38 16 24 Si 0.95 48.49 29.58 68.60 2.03 50.52 16 25 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 26 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 27 H -0.28 -14.52 7.11 99.48 0.71 -13.81 16 28 C 0.16 7.02 5.24 87.37 0.46 7.48 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.00 6.80 -2.38 -0.02 0.98 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 1.63 8.05 -2.39 -0.02 1.61 16 33 H 0.05 1.52 6.40 -2.38 -0.02 1.51 16 34 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 35 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 37 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.12 1.98 5.63 -2.39 -0.01 1.97 16 39 H 0.13 1.75 8.05 -2.39 -0.02 1.74 16 40 H 0.42 7.05 8.58 -92.70 -0.80 6.26 16 41 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.08 1.86 7.36 -2.39 -0.02 1.85 16 43 H 0.04 1.47 7.48 -2.39 -0.02 1.46 16 44 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.07 2.06 7.32 -2.39 -0.02 2.04 16 47 H 0.04 2.15 6.33 -2.38 -0.02 2.13 16 48 H -0.01 -0.27 8.03 -2.39 -0.02 -0.29 16 49 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 50 H 0.05 1.93 8.07 -2.39 -0.02 1.91 16 51 H 0.01 0.57 7.98 -2.39 -0.02 0.55 16 Total: -1.00 -78.87 396.21 3.43 -75.43 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.11 Total: 19.61 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 4.95 Total: -9.89 kcal Atomic # 7 Polarization: -106.62 SS G_CDS: -3.61 Total: -110.24 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.05 Total: -25.44 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 2.03 Total: 50.52 kcal Total: -78.87 3.43 -75.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034268767.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.587 kcal (2) G-P(sol) polarization free energy of solvation -78.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds