Wall clock time and date at job start Tue Mar 31 2020 16:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.46966 * 2 1 4 4 C 1.38258 * 120.00028 * 265.20571 * 3 2 1 5 5 C 1.38212 * 119.99895 * 180.23116 * 4 3 2 6 6 C 1.38260 * 120.00082 * 359.81668 * 5 4 3 7 7 C 1.38215 * 119.99912 * 359.97270 * 6 5 4 8 8 C 1.38219 * 120.00003 * 85.00094 * 3 2 1 9 9 C 1.50699 * 119.99911 * 359.97438 * 8 3 2 10 10 C 1.50698 * 109.47159 * 84.73186 * 9 8 3 11 11 O 1.21282 * 120.00078 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99960 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00034 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.35805 * 324.71975 * 13 12 10 15 15 C 1.54845 * 109.35943 * 204.99615 * 13 12 10 16 16 C 1.50121 * 110.81445 * 201.06155 * 15 13 12 17 17 C 1.52527 * 105.41433 * 97.68551 * 16 15 13 18 18 C 1.46238 * 114.27438 * 270.58765 * 17 16 15 19 19 N 1.50164 * 107.53002 * 58.41187 * 18 17 16 20 20 C 1.36940 * 120.53765 * 109.56644 * 19 18 17 21 21 H 1.08004 * 120.00183 * 172.84646 * 20 19 18 22 22 C 1.38815 * 119.99854 * 352.84170 * 20 19 18 23 23 N 1.31620 * 119.99900 * 319.29777 * 22 20 19 24 24 Si 1.86797 * 119.99615 * 139.29920 * 22 20 19 25 25 H 1.48500 * 109.47013 * 269.99639 * 24 22 20 26 26 H 1.48495 * 109.47429 * 29.99922 * 24 22 20 27 27 H 1.48503 * 109.47030 * 150.00168 * 24 22 20 28 28 C 1.43430 * 118.92544 * 289.83407 * 19 18 17 29 29 H 1.09003 * 109.46935 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47480 * 300.00374 * 1 2 3 31 31 H 1.09001 * 109.46611 * 60.00312 * 1 2 3 32 32 H 1.08998 * 109.47674 * 239.99324 * 2 1 3 33 33 H 1.09000 * 109.47057 * 119.99395 * 2 1 3 34 34 H 1.08000 * 119.99996 * 0.06099 * 4 3 2 35 35 H 1.08002 * 119.99648 * 179.83359 * 5 4 3 36 36 H 1.07997 * 119.99764 * 180.02562 * 6 5 4 37 37 H 1.07999 * 119.99708 * 180.02562 * 7 6 5 38 38 H 1.09001 * 109.46901 * 324.72588 * 9 8 3 39 39 H 1.09005 * 109.46747 * 204.73326 * 9 8 3 40 40 H 0.97001 * 120.00173 * 359.97438 * 12 10 9 41 41 H 1.08995 * 109.20678 * 80.72016 * 15 13 12 42 42 H 1.09000 * 109.17081 * 321.38192 * 15 13 12 43 43 H 1.08998 * 110.25305 * 338.70962 * 16 15 13 44 44 H 1.09002 * 110.37182 * 216.71684 * 16 15 13 45 45 H 1.09004 * 108.51900 * 149.35009 * 17 16 15 46 46 H 1.08994 * 108.39931 * 31.74574 * 17 16 15 47 47 H 1.08996 * 109.85131 * 298.89823 * 18 17 16 48 48 H 1.09009 * 109.89776 * 177.94655 * 18 17 16 49 49 H 0.96994 * 120.00074 * 353.65763 * 23 22 20 50 50 H 1.09001 * 108.15893 * 213.03183 * 28 19 18 51 51 H 1.09000 * 108.16547 * 329.60142 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3571 2.0392 -1.1932 5 6 2.8223 3.3407 -1.1927 6 6 2.9593 4.0255 0.0005 7 6 2.6305 3.4087 1.1929 8 6 2.1643 2.1072 1.1925 9 6 1.8054 1.4348 2.4925 10 6 2.9820 0.6321 2.9845 11 8 4.0106 0.6078 2.3424 12 7 2.8909 -0.0598 4.1375 13 6 4.0350 -0.8398 4.6161 14 1 4.5638 -1.2659 3.7635 15 6 3.5304 -1.9829 5.5306 16 6 4.6295 -2.4726 6.4282 17 6 4.4153 -1.7578 7.7585 18 6 5.1007 -0.4706 7.8666 19 7 4.6060 0.4007 6.7481 20 6 3.7978 1.4751 7.0083 21 1 3.5411 2.1623 6.2157 22 6 3.3085 1.6809 8.2910 23 7 2.8914 0.6591 9.0080 24 14 3.2420 3.4082 8.9991 25 1 4.5146 3.7030 9.7052 26 1 3.0478 4.3870 7.8994 27 1 2.1106 3.5077 9.9559 28 6 4.9887 0.0858 5.4021 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 2.2498 1.5044 -2.1253 35 1 3.0785 3.8228 -2.1246 36 1 3.3224 5.0426 0.0008 37 1 2.7371 3.9438 2.1250 38 1 0.9536 0.7729 2.3362 39 1 1.5463 2.1913 3.2333 40 1 2.0681 -0.0407 4.6509 41 1 3.1782 -2.8082 4.9118 42 1 2.7057 -1.6152 6.1412 43 1 5.6020 -2.2105 6.0114 44 1 4.5564 -3.5516 6.5637 45 1 4.7678 -2.4063 8.5606 46 1 3.3462 -1.5933 7.8924 47 1 6.1771 -0.6155 7.7744 48 1 4.8707 -0.0072 8.8261 49 1 2.8393 -0.2238 8.6098 50 1 5.0811 1.0198 4.8479 51 1 5.9714 -0.3851 5.4296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034268768.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:28 Heat of formation + Delta-G solvation = 4.366831 kcal Electronic energy + Delta-G solvation = -29592.742356 eV Core-core repulsion = 25878.193039 eV Total energy + Delta-G solvation = -3714.549317 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.13375 -39.00597 -37.78273 -34.46002 -34.27939 -33.27619 -32.51480 -31.13028 -30.08860 -29.47840 -27.53419 -25.91674 -24.21825 -23.84812 -22.87412 -21.99349 -20.84559 -20.38789 -19.61738 -19.22913 -17.11214 -16.75164 -16.41132 -16.02479 -15.67988 -15.09100 -14.97387 -14.57073 -14.25666 -13.87815 -13.68027 -13.63716 -13.56905 -13.36365 -13.03906 -12.90549 -12.70326 -12.38225 -12.15052 -12.10162 -11.93296 -11.80071 -11.71608 -11.31186 -11.05429 -10.87172 -10.78631 -10.67610 -10.57157 -10.38245 -10.16613 -10.06792 -9.82238 -9.74884 -9.49724 -9.39918 -8.72155 -8.65412 -8.50147 -8.14225 -6.96209 -6.17835 -3.02921 1.40720 1.47644 3.08362 3.51878 3.56189 3.59659 3.71140 3.97833 4.60139 4.67836 4.75818 4.92736 4.99906 5.11875 5.14137 5.18642 5.24176 5.25401 5.30856 5.37176 5.41098 5.46249 5.53054 5.59557 5.67546 5.71281 5.81556 5.88540 5.94569 5.99508 6.01623 6.03752 6.14669 6.20818 6.24840 6.34812 6.39269 6.53546 6.57032 6.59554 6.68840 6.69766 6.73185 6.86001 6.91135 7.07964 7.13378 7.22863 7.24544 7.97146 8.06103 8.52122 8.71995 9.07413 9.84975 10.30099 11.12576 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012994 B = 0.003683 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.379209 B = 7599.939667 C = 8796.649091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.065 4.065 4 C -0.121 4.121 5 C -0.122 4.122 6 C -0.125 4.125 7 C -0.103 4.103 8 C -0.054 4.054 9 C -0.110 4.110 10 C 0.514 3.486 11 O -0.545 6.545 12 N -0.706 5.706 13 C 0.116 3.884 14 H 0.073 0.927 15 C -0.111 4.111 16 C -0.110 4.110 17 C -0.135 4.135 18 C 0.129 3.871 19 N -0.587 5.587 20 C -0.350 4.350 21 H 0.063 0.937 22 C -0.016 4.016 23 N -0.903 5.903 24 Si 1.037 2.963 25 H -0.295 1.295 26 H -0.294 1.294 27 H -0.294 1.294 28 C 0.154 3.846 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.399 0.601 41 H 0.044 0.956 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.054 0.946 45 H 0.039 0.961 46 H 0.071 0.929 47 H 0.023 0.977 48 H 0.094 0.906 49 H 0.273 0.727 50 H 0.040 0.960 51 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.906 -2.188 -15.288 15.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 C -0.065 4.065 4 C -0.139 4.139 5 C -0.140 4.140 6 C -0.143 4.143 7 C -0.121 4.121 8 C -0.054 4.054 9 C -0.150 4.150 10 C 0.300 3.700 11 O -0.423 6.423 12 N -0.355 5.355 13 C 0.008 3.992 14 H 0.091 0.909 15 C -0.149 4.149 16 C -0.148 4.148 17 C -0.174 4.174 18 C 0.005 3.995 19 N -0.308 5.308 20 C -0.478 4.478 21 H 0.081 0.919 22 C -0.218 4.218 23 N -0.545 5.545 24 Si 0.868 3.132 25 H -0.223 1.223 26 H -0.221 1.221 27 H -0.221 1.221 28 C 0.024 3.976 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.233 0.767 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.090 0.910 47 H 0.041 0.959 48 H 0.112 0.888 49 H 0.086 0.914 50 H 0.059 0.941 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.521 -1.295 -14.358 14.840 hybrid contribution -0.095 -0.771 -1.120 1.363 sum -3.616 -2.066 -15.478 16.029 Atomic orbital electron populations 1.21775 0.94820 1.01681 1.02160 1.20545 0.95834 0.93026 1.03030 1.19640 0.98661 0.95616 0.92630 1.20925 1.00586 0.95231 0.97177 1.21054 1.00213 0.94897 0.97881 1.21052 1.00777 0.99917 0.92542 1.21040 0.98215 0.94605 0.98279 1.19146 0.99226 0.93882 0.93153 1.20769 0.97966 1.00303 0.95921 1.20260 0.89086 0.79735 0.80916 1.90679 1.31138 1.63274 1.57221 1.45998 1.17323 1.49221 1.22963 1.22725 0.88059 0.92294 0.96131 0.90897 1.21661 0.99308 0.96192 0.97763 1.20940 0.98833 0.98329 0.96729 1.21092 1.03031 0.97818 0.95463 1.20593 0.94432 0.89856 0.94622 1.44366 1.56357 1.30863 0.99261 1.19907 1.29066 1.01305 0.97489 0.91888 1.25367 0.97365 1.04318 0.94767 1.70836 1.38895 1.02410 1.42377 0.83933 0.76425 0.76987 0.75871 1.22259 1.22063 1.22071 1.20603 0.94071 0.96523 0.86448 0.92403 0.92414 0.92573 0.91204 0.90951 0.86460 0.86451 0.86293 0.86078 0.88281 0.88016 0.76739 0.93758 0.91015 0.91798 0.92682 0.94236 0.91043 0.95872 0.88751 0.91363 0.94132 0.94643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.72 37.16 0.36 -1.00 16 2 C -0.09 -0.99 5.38 -27.88 -0.15 -1.14 16 3 C -0.07 -0.86 5.13 -104.62 -0.54 -1.40 16 4 C -0.12 -1.46 9.68 -39.58 -0.38 -1.84 16 5 C -0.12 -1.43 10.05 -39.58 -0.40 -1.82 16 6 C -0.12 -1.55 10.05 -39.58 -0.40 -1.95 16 7 C -0.10 -1.45 9.68 -39.58 -0.38 -1.83 16 8 C -0.05 -0.76 4.37 -104.62 -0.46 -1.22 16 9 C -0.11 -1.51 5.16 -29.04 -0.15 -1.66 16 10 C 0.51 8.80 6.81 -10.99 -0.07 8.73 16 11 O -0.55 -11.17 15.70 5.56 0.09 -11.09 16 12 N -0.71 -12.00 5.08 -52.15 -0.26 -12.26 16 13 C 0.12 2.09 2.91 -66.22 -0.19 1.90 16 14 H 0.07 1.34 7.58 -51.93 -0.39 0.95 16 15 C -0.11 -1.85 5.23 -27.19 -0.14 -1.99 16 16 C -0.11 -1.81 5.76 -28.41 -0.16 -1.98 16 17 C -0.13 -2.59 4.96 -30.19 -0.15 -2.74 16 18 C 0.13 2.85 5.22 -5.21 -0.03 2.82 16 19 N -0.59 -13.69 2.62 -175.40 -0.46 -14.15 16 20 C -0.35 -9.09 9.46 -15.06 -0.14 -9.23 16 21 H 0.06 1.71 8.05 -52.48 -0.42 1.28 16 22 C -0.02 -0.42 4.53 -17.43 -0.08 -0.50 16 23 N -0.90 -24.89 11.99 55.49 0.67 -24.22 16 24 Si 1.04 24.42 30.06 -169.99 -5.11 19.31 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 C 0.15 3.24 4.74 -4.93 -0.02 3.21 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.54 6.79 -51.93 -0.35 0.18 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.73 8.05 -51.93 -0.42 0.31 16 33 H 0.07 0.93 6.40 -51.93 -0.33 0.59 16 34 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.10 1.13 5.63 -51.93 -0.29 0.84 16 39 H 0.10 1.33 8.05 -51.93 -0.42 0.91 16 40 H 0.40 6.45 8.44 -40.82 -0.34 6.10 16 41 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 1.33 6.58 -51.93 -0.34 0.99 16 43 H 0.06 1.06 6.28 -51.93 -0.33 0.73 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 1.53 4.65 -51.93 -0.24 1.29 16 47 H 0.02 0.48 8.13 -51.93 -0.42 0.06 16 48 H 0.09 2.37 5.61 -51.92 -0.29 2.08 16 49 H 0.27 7.30 4.95 -40.82 -0.20 7.10 16 50 H 0.04 0.95 7.80 -51.93 -0.41 0.55 16 51 H 0.04 0.72 6.89 -51.93 -0.36 0.36 16 LS Contribution 388.44 15.07 5.85 5.85 Total: -1.00 -30.10 388.44 -10.88 -40.98 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -8.16 Total: 9.20 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -3.49 Total: -13.63 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.06 Total: -50.63 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 24.42 SS G_CDS: -5.11 Total: 19.31 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.10 -10.88 -40.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034268768.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.351 kcal (2) G-P(sol) polarization free energy of solvation -30.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds