Wall clock time and date at job start Tue Mar 31 2020 16:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.46966 * 2 1 4 4 C 1.38258 * 120.00028 * 265.20571 * 3 2 1 5 5 C 1.38212 * 119.99895 * 180.23116 * 4 3 2 6 6 C 1.38260 * 120.00082 * 359.81668 * 5 4 3 7 7 C 1.38215 * 119.99912 * 359.97270 * 6 5 4 8 8 C 1.38219 * 120.00003 * 85.00094 * 3 2 1 9 9 C 1.50699 * 119.99911 * 359.97438 * 8 3 2 10 10 C 1.50698 * 109.47159 * 84.73186 * 9 8 3 11 11 O 1.21282 * 120.00078 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99960 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00034 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.35805 * 324.71975 * 13 12 10 15 15 C 1.54845 * 109.35943 * 204.99615 * 13 12 10 16 16 C 1.50121 * 110.81445 * 201.06155 * 15 13 12 17 17 C 1.52527 * 105.41433 * 97.68551 * 16 15 13 18 18 C 1.46238 * 114.27438 * 270.58765 * 17 16 15 19 19 N 1.50164 * 107.53002 * 58.41187 * 18 17 16 20 20 C 1.36940 * 120.53765 * 109.56644 * 19 18 17 21 21 H 1.08004 * 120.00183 * 172.84646 * 20 19 18 22 22 C 1.38815 * 119.99854 * 352.84170 * 20 19 18 23 23 N 1.31620 * 119.99900 * 319.29777 * 22 20 19 24 24 Si 1.86797 * 119.99615 * 139.29920 * 22 20 19 25 25 H 1.48500 * 109.47013 * 269.99639 * 24 22 20 26 26 H 1.48495 * 109.47429 * 29.99922 * 24 22 20 27 27 H 1.48503 * 109.47030 * 150.00168 * 24 22 20 28 28 C 1.43430 * 118.92544 * 289.83407 * 19 18 17 29 29 H 1.09003 * 109.46935 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47480 * 300.00374 * 1 2 3 31 31 H 1.09001 * 109.46611 * 60.00312 * 1 2 3 32 32 H 1.08998 * 109.47674 * 239.99324 * 2 1 3 33 33 H 1.09000 * 109.47057 * 119.99395 * 2 1 3 34 34 H 1.08000 * 119.99996 * 0.06099 * 4 3 2 35 35 H 1.08002 * 119.99648 * 179.83359 * 5 4 3 36 36 H 1.07997 * 119.99764 * 180.02562 * 6 5 4 37 37 H 1.07999 * 119.99708 * 180.02562 * 7 6 5 38 38 H 1.09001 * 109.46901 * 324.72588 * 9 8 3 39 39 H 1.09005 * 109.46747 * 204.73326 * 9 8 3 40 40 H 0.97001 * 120.00173 * 359.97438 * 12 10 9 41 41 H 1.08995 * 109.20678 * 80.72016 * 15 13 12 42 42 H 1.09000 * 109.17081 * 321.38192 * 15 13 12 43 43 H 1.08998 * 110.25305 * 338.70962 * 16 15 13 44 44 H 1.09002 * 110.37182 * 216.71684 * 16 15 13 45 45 H 1.09004 * 108.51900 * 149.35009 * 17 16 15 46 46 H 1.08994 * 108.39931 * 31.74574 * 17 16 15 47 47 H 1.08996 * 109.85131 * 298.89823 * 18 17 16 48 48 H 1.09009 * 109.89776 * 177.94655 * 18 17 16 49 49 H 0.96994 * 120.00074 * 353.65763 * 23 22 20 50 50 H 1.09001 * 108.15893 * 213.03183 * 28 19 18 51 51 H 1.09000 * 108.16547 * 329.60142 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3571 2.0392 -1.1932 5 6 2.8223 3.3407 -1.1927 6 6 2.9593 4.0255 0.0005 7 6 2.6305 3.4087 1.1929 8 6 2.1643 2.1072 1.1925 9 6 1.8054 1.4348 2.4925 10 6 2.9820 0.6321 2.9845 11 8 4.0106 0.6078 2.3424 12 7 2.8909 -0.0598 4.1375 13 6 4.0350 -0.8398 4.6161 14 1 4.5638 -1.2659 3.7635 15 6 3.5304 -1.9829 5.5306 16 6 4.6295 -2.4726 6.4282 17 6 4.4153 -1.7578 7.7585 18 6 5.1007 -0.4706 7.8666 19 7 4.6060 0.4007 6.7481 20 6 3.7978 1.4751 7.0083 21 1 3.5411 2.1623 6.2157 22 6 3.3085 1.6809 8.2910 23 7 2.8914 0.6591 9.0080 24 14 3.2420 3.4082 8.9991 25 1 4.5146 3.7030 9.7052 26 1 3.0478 4.3870 7.8994 27 1 2.1106 3.5077 9.9559 28 6 4.9887 0.0858 5.4021 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 2.2498 1.5044 -2.1253 35 1 3.0785 3.8228 -2.1246 36 1 3.3224 5.0426 0.0008 37 1 2.7371 3.9438 2.1250 38 1 0.9536 0.7729 2.3362 39 1 1.5463 2.1913 3.2333 40 1 2.0681 -0.0407 4.6509 41 1 3.1782 -2.8082 4.9118 42 1 2.7057 -1.6152 6.1412 43 1 5.6020 -2.2105 6.0114 44 1 4.5564 -3.5516 6.5637 45 1 4.7678 -2.4063 8.5606 46 1 3.3462 -1.5933 7.8924 47 1 6.1771 -0.6155 7.7744 48 1 4.8707 -0.0072 8.8261 49 1 2.8393 -0.2238 8.6098 50 1 5.0811 1.0198 4.8479 51 1 5.9714 -0.3851 5.4296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034268768.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:27 Heat of formation + Delta-G solvation = -10.560892 kcal Electronic energy + Delta-G solvation = -29593.389670 eV Core-core repulsion = 25878.193039 eV Total energy + Delta-G solvation = -3715.196632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.35053 -40.30317 -39.26610 -36.06107 -35.21264 -34.88326 -33.60598 -32.93769 -31.62657 -30.38252 -28.70467 -27.64347 -25.71656 -24.80026 -24.55292 -23.09574 -22.22875 -21.62383 -20.97954 -20.74103 -19.00445 -18.07324 -17.54539 -17.10783 -17.01788 -16.52062 -16.27289 -16.06312 -15.69821 -15.56056 -15.06971 -14.97670 -14.64276 -14.36362 -14.33122 -14.11495 -13.92128 -13.80864 -13.74674 -13.47549 -13.05151 -12.85278 -12.75497 -12.66654 -12.52428 -12.43100 -12.18158 -12.13195 -11.93576 -11.75521 -11.69670 -11.57061 -11.54177 -11.28147 -11.17857 -10.84752 -10.34572 -9.95630 -9.69875 -9.47820 -8.84899 -8.25570 -5.06085 0.42855 0.50446 1.60859 1.63158 1.71699 1.82556 2.34903 2.67995 2.91547 3.15053 3.46484 3.66898 3.79807 3.84810 3.96752 4.00521 4.05255 4.09018 4.26795 4.28873 4.31427 4.40190 4.44676 4.48191 4.48812 4.51086 4.62463 4.68762 4.71484 4.74166 4.74855 4.92995 5.01695 5.06346 5.07012 5.12971 5.15133 5.16882 5.22307 5.31085 5.38603 5.39486 5.49187 5.58929 5.61516 5.61971 5.68688 5.75467 5.93334 6.14251 6.50645 6.66132 7.11347 7.34040 7.88247 8.33513 9.07315 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012994 B = 0.003683 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.379209 B = 7599.939667 C = 8796.649091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.077 4.077 4 C -0.128 4.128 5 C -0.123 4.123 6 C -0.134 4.134 7 C -0.127 4.127 8 C -0.075 4.075 9 C -0.101 4.101 10 C 0.514 3.486 11 O -0.580 6.580 12 N -0.705 5.705 13 C 0.124 3.876 14 H 0.075 0.925 15 C -0.102 4.102 16 C -0.102 4.102 17 C -0.127 4.127 18 C 0.131 3.869 19 N -0.598 5.598 20 C -0.347 4.347 21 H 0.045 0.955 22 C -0.054 4.054 23 N -0.926 5.926 24 Si 1.079 2.921 25 H -0.294 1.294 26 H -0.284 1.284 27 H -0.297 1.297 28 C 0.159 3.841 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.137 0.863 37 H 0.115 0.885 38 H 0.122 0.878 39 H 0.104 0.896 40 H 0.403 0.597 41 H 0.072 0.928 42 H 0.051 0.949 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.055 0.945 46 H 0.048 0.952 47 H 0.035 0.965 48 H 0.062 0.938 49 H 0.272 0.728 50 H 0.008 0.992 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.307 -3.112 -16.903 17.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 C -0.077 4.077 4 C -0.146 4.146 5 C -0.141 4.141 6 C -0.152 4.152 7 C -0.146 4.146 8 C -0.076 4.076 9 C -0.141 4.141 10 C 0.302 3.698 11 O -0.461 6.461 12 N -0.354 5.354 13 C 0.016 3.984 14 H 0.093 0.907 15 C -0.140 4.140 16 C -0.140 4.140 17 C -0.166 4.166 18 C 0.008 3.992 19 N -0.320 5.320 20 C -0.476 4.476 21 H 0.063 0.937 22 C -0.253 4.253 23 N -0.570 5.570 24 Si 0.908 3.092 25 H -0.222 1.222 26 H -0.210 1.210 27 H -0.224 1.224 28 C 0.029 3.971 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.159 0.841 35 H 0.164 0.836 36 H 0.155 0.845 37 H 0.133 0.867 38 H 0.140 0.860 39 H 0.122 0.878 40 H 0.238 0.762 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.105 0.895 45 H 0.074 0.926 46 H 0.066 0.934 47 H 0.053 0.947 48 H 0.080 0.920 49 H 0.084 0.916 50 H 0.026 0.974 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.929 -2.228 -15.982 16.608 hybrid contribution 0.110 -0.462 -0.676 0.826 sum -3.819 -2.690 -16.658 17.300 Atomic orbital electron populations 1.21745 0.93165 1.02625 1.02403 1.20552 0.97223 0.91883 1.02583 1.19929 0.98643 0.96442 0.92703 1.21288 0.99904 0.95621 0.97761 1.21434 0.99096 0.94859 0.98679 1.21340 1.00568 1.00912 0.92390 1.21207 0.99362 0.95096 0.98897 1.19276 1.00436 0.94237 0.93620 1.20741 0.97115 1.00204 0.96023 1.20816 0.89483 0.79168 0.80350 1.90650 1.32755 1.64467 1.58217 1.46008 1.17183 1.49124 1.23056 1.22490 0.87923 0.92109 0.95894 0.90742 1.21577 0.98697 0.96200 0.97492 1.20930 0.98636 0.99830 0.94629 1.20929 1.00970 0.96816 0.97918 1.20545 0.95292 0.90784 0.92614 1.44397 1.56021 1.31152 1.00438 1.19860 1.28845 1.01808 0.97062 0.93736 1.26172 0.97660 1.06199 0.95268 1.70873 1.40517 1.02772 1.42793 0.83325 0.76056 0.74385 0.75452 1.22211 1.21035 1.22399 1.20579 0.95396 0.95749 0.85379 0.91091 0.92701 0.91795 0.90248 0.92744 0.84091 0.83620 0.84515 0.86729 0.85976 0.87808 0.76231 0.90967 0.93021 0.91658 0.89518 0.92635 0.93402 0.94679 0.92013 0.91563 0.97403 0.93793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.72 71.98 0.70 -1.65 16 2 C -0.09 -1.82 5.38 29.85 0.16 -1.66 16 3 C -0.08 -1.95 5.13 -19.86 -0.10 -2.05 16 4 C -0.13 -2.84 9.68 22.27 0.22 -2.63 16 5 C -0.12 -2.63 10.05 22.27 0.22 -2.41 16 6 C -0.13 -3.24 10.05 22.27 0.22 -3.01 16 7 C -0.13 -3.62 9.68 22.27 0.22 -3.40 16 8 C -0.08 -2.13 4.37 -19.87 -0.09 -2.22 16 9 C -0.10 -2.80 5.16 29.10 0.15 -2.65 16 10 C 0.51 17.82 6.81 87.66 0.60 18.41 16 11 O -0.58 -24.21 15.70 -3.04 -0.05 -24.26 16 12 N -0.70 -24.04 5.08 -437.29 -2.22 -26.26 16 13 C 0.12 4.40 2.91 46.10 0.13 4.54 16 14 H 0.07 2.67 7.58 -2.39 -0.02 2.65 16 15 C -0.10 -3.20 5.23 30.30 0.16 -3.04 16 16 C -0.10 -3.11 5.76 29.51 0.17 -2.94 16 17 C -0.13 -4.75 4.96 28.36 0.14 -4.61 16 18 C 0.13 5.80 5.22 83.58 0.44 6.24 16 19 N -0.60 -28.22 2.62 -708.84 -1.86 -30.08 16 20 C -0.35 -18.40 9.46 84.03 0.80 -17.60 16 21 H 0.04 2.49 8.05 -2.91 -0.02 2.47 16 22 C -0.05 -2.90 4.53 84.86 0.38 -2.52 16 23 N -0.93 -51.80 11.99 21.65 0.26 -51.54 16 24 Si 1.08 50.15 30.06 68.60 2.06 52.21 16 25 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 26 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 27 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 28 C 0.16 6.72 4.74 87.43 0.41 7.13 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 0.93 6.79 -2.39 -0.02 0.91 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.08 1.51 8.05 -2.39 -0.02 1.49 16 33 H 0.05 1.35 6.40 -2.39 -0.02 1.34 16 34 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 35 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 36 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 37 H 0.11 3.24 8.06 -2.91 -0.02 3.21 16 38 H 0.12 2.72 5.63 -2.39 -0.01 2.71 16 39 H 0.10 2.78 8.05 -2.38 -0.02 2.76 16 40 H 0.40 13.09 8.44 -92.71 -0.78 12.31 16 41 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.05 1.87 6.58 -2.39 -0.02 1.86 16 43 H 0.06 2.00 6.28 -2.39 -0.02 1.98 16 44 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 46 H 0.05 2.04 4.65 -2.39 -0.01 2.03 16 47 H 0.04 1.44 8.13 -2.39 -0.02 1.42 16 48 H 0.06 3.16 5.61 -2.38 -0.01 3.14 16 49 H 0.27 14.79 4.95 -92.71 -0.46 14.33 16 50 H 0.01 0.37 7.80 -2.39 -0.02 0.35 16 51 H 0.04 1.76 6.89 -2.39 -0.02 1.74 16 Total: -1.00 -65.91 388.44 3.58 -62.33 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: 0.45 Total: 33.68 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: 4.93 Total: -16.07 kcal Atomic # 7 Polarization: -104.07 SS G_CDS: -3.82 Total: -107.89 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.05 Total: -24.26 kcal Atomic # 14 Polarization: 50.15 SS G_CDS: 2.06 Total: 52.21 kcal Total: -65.91 3.58 -62.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034268768.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.771 kcal (2) G-P(sol) polarization free energy of solvation -65.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds