Wall clock time and date at job start Tue Mar 31 2020 16:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50693 * 109.47268 * 2 1 4 4 C 1.38264 * 120.00337 * 269.97774 * 3 2 1 5 5 C 1.38212 * 120.00414 * 179.97438 * 4 3 2 6 6 C 1.38262 * 119.99702 * 359.79315 * 5 4 3 7 7 C 1.38220 * 120.00058 * 0.48318 * 6 5 4 8 8 C 1.50697 * 120.00016 * 179.76456 * 7 6 5 9 9 C 1.50697 * 109.47165 * 269.72794 * 8 7 6 10 10 O 1.21276 * 120.00170 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99503 * 179.97438 * 9 8 7 12 12 C 1.46504 * 119.99647 * 179.97438 * 11 9 8 13 13 H 1.09009 * 109.36556 * 35.25696 * 12 11 9 14 14 C 1.50886 * 109.36663 * 154.99787 * 12 11 9 15 15 C 1.52564 * 109.35752 * 211.95081 * 14 12 11 16 16 C 1.47090 * 114.32625 * 274.98673 * 15 14 12 17 17 C 1.54864 * 110.32406 * 62.80939 * 16 15 14 18 18 N 1.44579 * 109.59404 * 288.73229 * 17 16 15 19 19 C 1.36938 * 118.64373 * 270.69862 * 18 17 16 20 20 H 1.08002 * 119.99519 * 27.27247 * 19 18 17 21 21 C 1.38809 * 120.00184 * 207.27109 * 19 18 17 22 22 N 1.31615 * 120.00143 * 27.25115 * 21 19 18 23 23 Si 1.86804 * 119.99916 * 207.25277 * 21 19 18 24 24 H 1.48501 * 109.46965 * 179.97438 * 23 21 19 25 25 H 1.48493 * 109.47234 * 300.00044 * 23 21 19 26 26 H 1.48498 * 109.47141 * 60.00101 * 23 21 19 27 27 C 1.47608 * 122.71539 * 90.98581 * 18 17 16 28 28 C 1.38218 * 120.00232 * 89.99806 * 3 2 1 29 29 H 1.09004 * 109.47364 * 59.99891 * 1 2 3 30 30 H 1.08998 * 109.47393 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47370 * 300.00071 * 1 2 3 32 32 H 1.09001 * 109.47370 * 239.99929 * 2 1 3 33 33 H 1.09004 * 109.47364 * 120.00109 * 2 1 3 34 34 H 1.07999 * 119.99524 * 0.02562 * 4 3 2 35 35 H 1.07994 * 120.00207 * 180.02562 * 5 4 3 36 36 H 1.07999 * 120.00067 * 180.25432 * 6 5 4 37 37 H 1.08999 * 109.47270 * 149.72576 * 8 7 6 38 38 H 1.09005 * 109.46971 * 29.73373 * 8 7 6 39 39 H 0.96994 * 120.00630 * 359.97438 * 11 9 8 40 40 H 1.08998 * 109.48294 * 91.98673 * 14 12 11 41 41 H 1.08990 * 109.49110 * 331.91961 * 14 12 11 42 42 H 1.09003 * 108.50957 * 153.73610 * 15 14 12 43 43 H 1.08994 * 108.51753 * 36.24877 * 15 14 12 44 44 H 1.09003 * 109.33269 * 302.54435 * 16 15 14 45 45 H 1.09005 * 109.18892 * 182.97783 * 16 15 14 46 46 H 1.08997 * 109.45599 * 168.69048 * 17 16 15 47 47 H 1.08997 * 109.44957 * 48.76440 * 17 16 15 48 48 H 0.96998 * 120.00145 * 5.95088 * 22 21 19 49 49 H 1.09001 * 108.94679 * 78.29141 * 27 18 17 50 50 H 1.09002 * 108.94809 * 196.92041 * 27 18 17 51 51 H 1.07998 * 119.99756 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2632 2.0724 -1.1974 5 6 2.7234 3.3757 -1.1974 6 6 2.9488 4.0292 0.0000 7 6 2.7235 3.3758 1.1970 8 6 2.9742 4.0864 2.5021 9 6 4.3973 3.8496 2.9376 10 8 5.1354 3.1711 2.2552 11 7 4.8501 4.3927 4.0850 12 6 6.2334 4.1621 4.5087 13 1 6.8785 4.1226 3.6309 14 6 6.6771 5.2919 5.4051 15 6 8.1723 5.5295 5.2167 16 6 9.0317 4.6625 6.0371 17 6 8.8276 3.1779 5.6463 18 7 7.5297 2.7311 6.1003 19 6 7.4212 2.1998 7.3578 20 1 8.1138 2.4973 8.1312 21 6 6.4211 1.2790 7.6383 22 7 5.9380 0.5192 6.6783 23 14 5.7609 1.1181 9.3783 24 1 4.7064 0.0731 9.4130 25 1 6.8662 0.7374 10.2939 26 1 5.1846 2.4165 9.8111 27 6 6.3178 2.8183 5.2621 28 6 2.2626 2.0724 1.1970 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.0831 1.5633 -2.1326 35 1 2.9034 3.8848 -2.1326 36 1 3.3046 5.0489 0.0001 37 1 2.2932 3.7024 3.2616 38 1 2.8072 5.1556 2.3716 39 1 4.2601 4.9363 4.6303 40 1 6.4785 5.0307 6.4445 41 1 6.1294 6.1979 5.1464 42 1 8.3915 6.5682 5.4643 43 1 8.4189 5.3683 4.1673 44 1 8.7802 4.7965 7.0892 45 1 10.0744 4.9373 5.8776 46 1 9.6038 2.5701 6.1112 47 1 8.8878 3.0762 4.5628 48 1 6.3384 0.5404 5.7950 49 1 6.3284 2.0030 4.5387 50 1 5.4390 2.7133 5.8984 51 1 2.0822 1.5634 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034277059.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:31 Heat of formation + Delta-G solvation = -12.140474 kcal Electronic energy + Delta-G solvation = -28784.206814 eV Core-core repulsion = 25068.941687 eV Total energy + Delta-G solvation = -3715.265127 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.02677 -39.07101 -37.69399 -34.60887 -34.34165 -33.72357 -32.44424 -30.68926 -30.17555 -29.48795 -27.44586 -25.86715 -24.31028 -23.98553 -23.06853 -22.04986 -20.85657 -20.25515 -19.59079 -19.23066 -17.22473 -16.79481 -16.49930 -15.85373 -15.78764 -15.22657 -14.99271 -14.47815 -14.19378 -13.93973 -13.80565 -13.61189 -13.58230 -13.36290 -13.19027 -12.91466 -12.85877 -12.50739 -12.14896 -12.09879 -11.95200 -11.76982 -11.54334 -11.32780 -11.09007 -10.95765 -10.85707 -10.78545 -10.66952 -10.48139 -10.18663 -10.07336 -9.97987 -9.81724 -9.57782 -9.35377 -8.72749 -8.57471 -8.55993 -8.26906 -6.83593 -6.02512 -3.20515 1.36960 1.45416 2.97108 3.43893 3.50267 3.51390 3.70400 3.89502 4.62293 4.63025 4.68372 4.83469 5.03714 5.08478 5.12352 5.21515 5.22395 5.28012 5.28863 5.38798 5.40893 5.45136 5.55987 5.58220 5.61574 5.62354 5.79350 5.81852 5.84589 5.90810 6.02440 6.09798 6.12625 6.15410 6.26745 6.37691 6.47899 6.49633 6.58420 6.59688 6.60386 6.66314 6.66809 6.84379 6.89685 6.97552 7.05258 7.12744 7.28906 7.86542 8.09547 8.57582 8.63110 9.20955 9.90165 10.29069 11.22468 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012004 B = 0.003281 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.084978 B = 8530.667725 C =10090.258933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 C -0.081 4.081 4 C -0.122 4.122 5 C -0.119 4.119 6 C -0.112 4.112 7 C -0.057 4.057 8 C -0.104 4.104 9 C 0.512 3.488 10 O -0.530 6.530 11 N -0.722 5.722 12 C 0.127 3.873 13 H 0.074 0.926 14 C -0.115 4.115 15 C -0.098 4.098 16 C -0.146 4.146 17 C 0.156 3.844 18 N -0.592 5.592 19 C -0.360 4.360 20 H 0.055 0.945 21 C -0.020 4.020 22 N -0.910 5.910 23 Si 1.058 2.942 24 H -0.286 1.286 25 H -0.293 1.293 26 H -0.294 1.294 27 C 0.154 3.846 28 C -0.100 4.100 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.396 0.604 40 H 0.082 0.918 41 H 0.052 0.948 42 H 0.045 0.955 43 H 0.048 0.952 44 H 0.062 0.938 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.030 0.970 48 H 0.271 0.729 49 H 0.023 0.977 50 H 0.069 0.931 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.252 8.789 -12.033 17.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.124 4.124 3 C -0.081 4.081 4 C -0.140 4.140 5 C -0.137 4.137 6 C -0.130 4.130 7 C -0.057 4.057 8 C -0.144 4.144 9 C 0.297 3.703 10 O -0.406 6.406 11 N -0.373 5.373 12 C 0.022 3.978 13 H 0.092 0.908 14 C -0.153 4.153 15 C -0.136 4.136 16 C -0.186 4.186 17 C 0.028 3.972 18 N -0.314 5.314 19 C -0.489 4.489 20 H 0.073 0.927 21 C -0.223 4.223 22 N -0.549 5.549 23 Si 0.888 3.112 24 H -0.212 1.212 25 H -0.220 1.220 26 H -0.222 1.222 27 C 0.027 3.973 28 C -0.118 4.118 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.229 0.771 40 H 0.100 0.900 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.048 0.952 48 H 0.082 0.918 49 H 0.041 0.959 50 H 0.088 0.912 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.842 7.498 -11.600 16.960 hybrid contribution 1.022 1.133 -0.562 1.626 sum -8.820 8.631 -12.163 17.327 Atomic orbital electron populations 1.21736 0.94826 1.01604 1.02046 1.20552 0.96029 0.92776 1.03073 1.19832 0.99093 0.96082 0.93057 1.20957 1.00701 0.95009 0.97309 1.21020 0.99948 0.95012 0.97701 1.20920 1.00136 0.99908 0.92035 1.19252 0.98502 0.94367 0.93605 1.20704 0.95291 1.02112 0.96323 1.20411 0.89151 0.79677 0.81040 1.90727 1.57964 1.37870 1.54048 1.46183 1.14305 1.53239 1.23613 1.21634 0.81088 0.97485 0.97586 0.90789 1.21259 0.96125 0.96219 1.01682 1.20221 0.94687 0.98772 0.99969 1.21461 0.97377 0.99176 1.00579 1.20727 0.88420 0.91898 0.96127 1.43600 1.01138 1.71255 1.15437 1.19936 1.19522 1.22411 0.87006 0.92680 1.25769 0.98804 0.92424 1.05268 1.70763 1.45341 1.33956 1.04839 0.83638 0.76468 0.75841 0.75288 1.21198 1.21984 1.22165 1.21558 0.90794 0.91680 0.93251 1.20903 0.99186 0.93911 0.97799 0.92761 0.92470 0.92511 0.91139 0.90756 0.86472 0.86318 0.86496 0.87972 0.88283 0.77084 0.89973 0.92891 0.93589 0.93311 0.91953 0.93410 0.93483 0.95205 0.91819 0.95902 0.91228 0.86134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.89 37.15 0.37 -0.92 16 2 C -0.09 -0.92 6.06 -27.89 -0.17 -1.09 16 3 C -0.08 -1.02 5.13 -104.62 -0.54 -1.55 16 4 C -0.12 -1.42 9.70 -39.58 -0.38 -1.81 16 5 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 6 C -0.11 -1.41 9.70 -39.58 -0.38 -1.79 16 7 C -0.06 -0.77 4.37 -104.62 -0.46 -1.23 16 8 C -0.10 -1.27 5.83 -29.04 -0.17 -1.44 16 9 C 0.51 8.49 7.78 -10.99 -0.09 8.40 16 10 O -0.53 -11.25 15.70 5.56 0.09 -11.16 16 11 N -0.72 -11.38 4.98 -54.18 -0.27 -11.65 16 12 C 0.13 2.40 2.27 -68.31 -0.16 2.24 16 13 H 0.07 1.52 6.75 -51.92 -0.35 1.17 16 14 C -0.11 -1.92 5.06 -28.02 -0.14 -2.06 16 15 C -0.10 -1.59 5.15 -29.79 -0.15 -1.74 16 16 C -0.15 -2.60 5.74 -28.58 -0.16 -2.76 16 17 C 0.16 3.35 5.65 -4.08 -0.02 3.33 16 18 N -0.59 -14.66 2.12 -171.87 -0.36 -15.02 16 19 C -0.36 -9.88 9.30 -15.06 -0.14 -10.02 16 20 H 0.06 1.53 7.96 -52.49 -0.42 1.11 16 21 C -0.02 -0.55 4.52 -17.43 -0.08 -0.63 16 22 N -0.91 -27.44 12.56 55.49 0.70 -26.74 16 23 Si 1.06 25.01 30.00 -169.99 -5.10 19.91 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 C 0.15 3.66 4.15 -2.76 -0.01 3.64 16 28 C -0.10 -1.39 9.36 -39.58 -0.37 -1.76 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 33 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 34 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.10 1.08 8.09 -51.93 -0.42 0.66 16 38 H 0.10 0.90 8.08 -51.93 -0.42 0.48 16 39 H 0.40 4.94 8.54 -40.82 -0.35 4.59 16 40 H 0.08 1.57 7.49 -51.93 -0.39 1.18 16 41 H 0.05 0.74 7.94 -51.93 -0.41 0.32 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.78 7.36 -51.93 -0.38 0.40 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.05 1.04 7.99 -51.93 -0.41 0.62 16 47 H 0.03 0.63 8.06 -51.93 -0.42 0.21 16 48 H 0.27 8.43 6.49 -40.82 -0.26 8.16 16 49 H 0.02 0.63 7.20 -51.93 -0.37 0.25 16 50 H 0.07 1.82 6.68 -51.93 -0.35 1.47 16 51 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 402.31 15.07 6.06 6.06 Total: -1.00 -33.25 402.31 -11.16 -44.42 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -8.82 Total: 7.13 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -3.46 Total: -12.95 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.06 Total: -53.41 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.10 Total: 19.91 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.25 -11.16 -44.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034277059.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.278 kcal (2) G-P(sol) polarization free energy of solvation -33.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds