Wall clock time and date at job start Tue Mar 31 2020 16:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50693 * 109.47268 * 2 1 4 4 C 1.38264 * 120.00337 * 269.97774 * 3 2 1 5 5 C 1.38212 * 120.00414 * 179.97438 * 4 3 2 6 6 C 1.38262 * 119.99702 * 359.79315 * 5 4 3 7 7 C 1.38220 * 120.00058 * 0.48318 * 6 5 4 8 8 C 1.50697 * 120.00016 * 179.76456 * 7 6 5 9 9 C 1.50697 * 109.47165 * 269.72794 * 8 7 6 10 10 O 1.21276 * 120.00170 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99503 * 179.97438 * 9 8 7 12 12 C 1.46504 * 119.99647 * 179.97438 * 11 9 8 13 13 H 1.09009 * 109.36556 * 35.25696 * 12 11 9 14 14 C 1.50886 * 109.36663 * 154.99787 * 12 11 9 15 15 C 1.52564 * 109.35752 * 211.95081 * 14 12 11 16 16 C 1.47090 * 114.32625 * 274.98673 * 15 14 12 17 17 C 1.54864 * 110.32406 * 62.80939 * 16 15 14 18 18 N 1.44579 * 109.59404 * 288.73229 * 17 16 15 19 19 C 1.36938 * 118.64373 * 270.69862 * 18 17 16 20 20 H 1.08002 * 119.99519 * 27.27247 * 19 18 17 21 21 C 1.38809 * 120.00184 * 207.27109 * 19 18 17 22 22 N 1.31615 * 120.00143 * 27.25115 * 21 19 18 23 23 Si 1.86804 * 119.99916 * 207.25277 * 21 19 18 24 24 H 1.48501 * 109.46965 * 179.97438 * 23 21 19 25 25 H 1.48493 * 109.47234 * 300.00044 * 23 21 19 26 26 H 1.48498 * 109.47141 * 60.00101 * 23 21 19 27 27 C 1.47608 * 122.71539 * 90.98581 * 18 17 16 28 28 C 1.38218 * 120.00232 * 89.99806 * 3 2 1 29 29 H 1.09004 * 109.47364 * 59.99891 * 1 2 3 30 30 H 1.08998 * 109.47393 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47370 * 300.00071 * 1 2 3 32 32 H 1.09001 * 109.47370 * 239.99929 * 2 1 3 33 33 H 1.09004 * 109.47364 * 120.00109 * 2 1 3 34 34 H 1.07999 * 119.99524 * 0.02562 * 4 3 2 35 35 H 1.07994 * 120.00207 * 180.02562 * 5 4 3 36 36 H 1.07999 * 120.00067 * 180.25432 * 6 5 4 37 37 H 1.08999 * 109.47270 * 149.72576 * 8 7 6 38 38 H 1.09005 * 109.46971 * 29.73373 * 8 7 6 39 39 H 0.96994 * 120.00630 * 359.97438 * 11 9 8 40 40 H 1.08998 * 109.48294 * 91.98673 * 14 12 11 41 41 H 1.08990 * 109.49110 * 331.91961 * 14 12 11 42 42 H 1.09003 * 108.50957 * 153.73610 * 15 14 12 43 43 H 1.08994 * 108.51753 * 36.24877 * 15 14 12 44 44 H 1.09003 * 109.33269 * 302.54435 * 16 15 14 45 45 H 1.09005 * 109.18892 * 182.97783 * 16 15 14 46 46 H 1.08997 * 109.45599 * 168.69048 * 17 16 15 47 47 H 1.08997 * 109.44957 * 48.76440 * 17 16 15 48 48 H 0.96998 * 120.00145 * 5.95088 * 22 21 19 49 49 H 1.09001 * 108.94679 * 78.29141 * 27 18 17 50 50 H 1.09002 * 108.94809 * 196.92041 * 27 18 17 51 51 H 1.07998 * 119.99756 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2632 2.0724 -1.1974 5 6 2.7234 3.3757 -1.1974 6 6 2.9488 4.0292 0.0000 7 6 2.7235 3.3758 1.1970 8 6 2.9742 4.0864 2.5021 9 6 4.3973 3.8496 2.9376 10 8 5.1354 3.1711 2.2552 11 7 4.8501 4.3927 4.0850 12 6 6.2334 4.1621 4.5087 13 1 6.8785 4.1226 3.6309 14 6 6.6771 5.2919 5.4051 15 6 8.1723 5.5295 5.2167 16 6 9.0317 4.6625 6.0371 17 6 8.8276 3.1779 5.6463 18 7 7.5297 2.7311 6.1003 19 6 7.4212 2.1998 7.3578 20 1 8.1138 2.4973 8.1312 21 6 6.4211 1.2790 7.6383 22 7 5.9380 0.5192 6.6783 23 14 5.7609 1.1181 9.3783 24 1 4.7064 0.0731 9.4130 25 1 6.8662 0.7374 10.2939 26 1 5.1846 2.4165 9.8111 27 6 6.3178 2.8183 5.2621 28 6 2.2626 2.0724 1.1970 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.0831 1.5633 -2.1326 35 1 2.9034 3.8848 -2.1326 36 1 3.3046 5.0489 0.0001 37 1 2.2932 3.7024 3.2616 38 1 2.8072 5.1556 2.3716 39 1 4.2601 4.9363 4.6303 40 1 6.4785 5.0307 6.4445 41 1 6.1294 6.1979 5.1464 42 1 8.3915 6.5682 5.4643 43 1 8.4189 5.3683 4.1673 44 1 8.7802 4.7965 7.0892 45 1 10.0744 4.9373 5.8776 46 1 9.6038 2.5701 6.1112 47 1 8.8878 3.0762 4.5628 48 1 6.3384 0.5404 5.7950 49 1 6.3284 2.0030 4.5387 50 1 5.4390 2.7133 5.8984 51 1 2.0822 1.5634 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034277059.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:30 Heat of formation + Delta-G solvation = -30.568530 kcal Electronic energy + Delta-G solvation = -28785.005915 eV Core-core repulsion = 25068.941687 eV Total energy + Delta-G solvation = -3716.064228 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.28159 -40.25074 -39.23937 -36.22657 -35.40618 -35.30555 -33.44950 -32.58884 -31.69241 -30.39294 -28.54637 -27.76654 -25.97097 -24.87433 -24.78295 -23.10702 -22.09617 -21.60118 -21.02106 -20.73091 -19.25788 -18.06751 -17.55673 -17.19027 -17.00858 -16.65214 -16.08669 -15.95784 -15.69267 -15.48598 -15.45450 -14.84103 -14.68138 -14.58841 -14.39825 -14.16186 -14.03363 -13.89814 -13.80670 -13.30589 -13.05557 -12.90400 -12.78420 -12.75055 -12.62350 -12.45352 -12.17019 -12.09395 -11.94120 -11.80286 -11.72815 -11.65604 -11.58615 -11.38573 -11.30617 -10.94208 -10.39904 -10.10044 -9.69746 -9.50587 -8.93273 -8.23997 -5.41486 0.41136 0.49698 1.56653 1.62410 1.66086 1.82947 2.19838 2.66281 2.88607 3.18776 3.52120 3.64930 3.79759 3.81656 3.95750 3.97056 4.06308 4.18096 4.20701 4.25249 4.28664 4.30559 4.37085 4.46920 4.50890 4.55521 4.57664 4.67458 4.70513 4.76458 4.82744 4.86310 4.97309 5.01275 5.05706 5.12127 5.18344 5.19870 5.21093 5.24268 5.34192 5.34803 5.35454 5.55525 5.57106 5.57899 5.65154 5.72167 5.88149 6.13501 6.34374 6.59882 7.08598 7.30710 7.80517 8.18500 8.95968 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012004 B = 0.003281 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.084978 B = 8530.667725 C =10090.258933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 C -0.093 4.093 4 C -0.128 4.128 5 C -0.122 4.122 6 C -0.124 4.124 7 C -0.075 4.075 8 C -0.094 4.094 9 C 0.508 3.492 10 O -0.583 6.583 11 N -0.713 5.713 12 C 0.144 3.856 13 H 0.058 0.942 14 C -0.106 4.106 15 C -0.101 4.101 16 C -0.130 4.130 17 C 0.147 3.853 18 N -0.605 5.605 19 C -0.359 4.359 20 H 0.054 0.946 21 C -0.073 4.073 22 N -0.940 5.940 23 Si 1.111 2.889 24 H -0.296 1.296 25 H -0.276 1.276 26 H -0.274 1.274 27 C 0.174 3.826 28 C -0.128 4.128 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.140 0.860 35 H 0.146 0.854 36 H 0.135 0.865 37 H 0.117 0.883 38 H 0.139 0.861 39 H 0.415 0.585 40 H 0.059 0.941 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.076 0.924 46 H 0.033 0.967 47 H 0.027 0.973 48 H 0.248 0.752 49 H -0.030 1.030 50 H 0.040 0.960 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.867 11.796 -12.224 19.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.125 4.125 3 C -0.093 4.093 4 C -0.146 4.146 5 C -0.140 4.140 6 C -0.142 4.142 7 C -0.075 4.075 8 C -0.133 4.133 9 C 0.296 3.704 10 O -0.462 6.462 11 N -0.365 5.365 12 C 0.038 3.962 13 H 0.076 0.924 14 C -0.144 4.144 15 C -0.139 4.139 16 C -0.170 4.170 17 C 0.021 3.979 18 N -0.328 5.328 19 C -0.488 4.488 20 H 0.072 0.928 21 C -0.270 4.270 22 N -0.581 5.581 23 Si 0.935 3.065 24 H -0.222 1.222 25 H -0.202 1.202 26 H -0.199 1.199 27 C 0.047 3.953 28 C -0.146 4.146 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.158 0.842 35 H 0.164 0.836 36 H 0.153 0.847 37 H 0.135 0.865 38 H 0.157 0.843 39 H 0.252 0.748 40 H 0.078 0.922 41 H 0.111 0.889 42 H 0.100 0.900 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.095 0.905 46 H 0.051 0.949 47 H 0.046 0.954 48 H 0.058 0.942 49 H -0.012 1.012 50 H 0.059 0.941 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.450 10.567 -11.777 18.962 hybrid contribution 1.307 0.132 -0.579 1.435 sum -9.143 10.699 -12.356 18.728 Atomic orbital electron populations 1.21695 0.93386 1.02449 1.02117 1.20592 0.97289 0.91778 1.02877 1.20119 0.99034 0.96957 0.93160 1.21287 1.00168 0.95343 0.97799 1.21416 0.98895 0.95074 0.98614 1.21231 1.00031 1.00898 0.91991 1.19479 0.98919 0.94449 0.94677 1.20734 0.91887 1.04563 0.96120 1.21258 0.90558 0.78231 0.80401 1.90706 1.59773 1.40055 1.55680 1.46060 1.13498 1.53185 1.23758 1.21205 0.82814 0.95616 0.96611 0.92352 1.21207 0.97326 0.96465 0.99407 1.20241 0.93615 1.00278 0.99720 1.21278 0.99703 0.95977 1.00006 1.20942 0.86536 0.94613 0.95848 1.43799 1.02631 1.71506 1.14904 1.20190 1.19090 1.21597 0.87951 0.92849 1.27202 0.99511 0.92115 1.08147 1.70916 1.46482 1.36321 1.04397 0.82929 0.76061 0.76368 0.71104 1.22187 1.20217 1.19944 1.21237 0.89367 0.93189 0.91507 1.21040 1.00825 0.94715 0.98015 0.91872 0.91229 0.93207 0.89988 0.92260 0.84175 0.83650 0.84699 0.86505 0.84292 0.74782 0.92241 0.88918 0.89991 0.93012 0.93199 0.90524 0.94861 0.95425 0.94248 1.01188 0.94113 0.87356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.89 71.98 0.71 -1.70 16 2 C -0.09 -1.89 6.06 29.84 0.18 -1.71 16 3 C -0.09 -2.37 5.13 -19.86 -0.10 -2.47 16 4 C -0.13 -2.86 9.70 22.27 0.22 -2.65 16 5 C -0.12 -2.65 10.05 22.27 0.22 -2.42 16 6 C -0.12 -2.95 9.70 22.27 0.22 -2.73 16 7 C -0.07 -2.01 4.37 -19.87 -0.09 -2.10 16 8 C -0.09 -2.17 5.83 29.10 0.17 -2.00 16 9 C 0.51 16.91 7.78 87.66 0.68 17.59 16 10 O -0.58 -25.73 15.70 -3.02 -0.05 -25.78 16 11 N -0.71 -22.06 4.98 -443.71 -2.21 -24.27 16 12 C 0.14 5.45 2.27 44.74 0.10 5.55 16 13 H 0.06 2.43 6.75 -2.38 -0.02 2.41 16 14 C -0.11 -3.31 5.06 29.76 0.15 -3.16 16 15 C -0.10 -2.94 5.15 28.61 0.15 -2.80 16 16 C -0.13 -4.39 5.74 29.39 0.17 -4.22 16 17 C 0.15 6.42 5.65 87.37 0.49 6.91 16 18 N -0.61 -31.05 2.12 -697.68 -1.48 -32.53 16 19 C -0.36 -20.19 9.30 84.03 0.78 -19.41 16 20 H 0.05 2.99 7.96 -2.91 -0.02 2.97 16 21 C -0.07 -4.23 4.52 84.86 0.38 -3.84 16 22 N -0.94 -59.57 12.56 21.65 0.27 -59.30 16 23 Si 1.11 51.08 30.00 68.60 2.06 53.14 16 24 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 25 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 27 C 0.17 8.71 4.15 86.61 0.36 9.07 16 28 C -0.13 -3.69 9.36 22.27 0.21 -3.48 16 29 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 1.53 8.09 -2.39 -0.02 1.52 16 33 H 0.06 1.42 8.09 -2.38 -0.02 1.40 16 34 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 35 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 36 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 37 H 0.12 2.36 8.09 -2.39 -0.02 2.34 16 38 H 0.14 2.08 8.08 -2.38 -0.02 2.06 16 39 H 0.42 9.56 8.54 -92.71 -0.79 8.77 16 40 H 0.06 2.18 7.49 -2.39 -0.02 2.16 16 41 H 0.09 2.19 7.94 -2.39 -0.02 2.17 16 42 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.05 1.52 7.36 -2.39 -0.02 1.50 16 44 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 46 H 0.03 1.50 7.99 -2.39 -0.02 1.48 16 47 H 0.03 1.20 8.06 -2.39 -0.02 1.18 16 48 H 0.25 16.57 6.49 -92.71 -0.60 15.97 16 49 H -0.03 -1.78 7.20 -2.39 -0.02 -1.79 16 50 H 0.04 2.24 6.68 -2.39 -0.02 2.22 16 51 H 0.11 3.23 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -78.04 402.31 3.88 -74.16 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.27 Total: 30.14 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: 5.01 Total: -15.56 kcal Atomic # 7 Polarization: -112.68 SS G_CDS: -3.41 Total: -116.10 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.05 Total: -25.78 kcal Atomic # 14 Polarization: 51.08 SS G_CDS: 2.06 Total: 53.14 kcal Total: -78.04 3.88 -74.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034277059.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.595 kcal (2) G-P(sol) polarization free energy of solvation -78.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds