Wall clock time and date at job start Tue Mar 31 2020 16:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47402 * 2 1 4 4 C 1.38256 * 119.99625 * 89.99994 * 3 2 1 5 5 C 1.38219 * 120.00018 * 179.97438 * 4 3 2 6 6 C 1.38263 * 119.99536 * 0.02562 * 5 4 3 7 7 C 1.38204 * 120.00371 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00393 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.47275 * 89.99867 * 8 7 6 10 10 O 1.21288 * 119.99929 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00270 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00023 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.24892 * 324.65814 * 12 11 9 14 14 C 1.54836 * 109.36023 * 205.00276 * 12 11 9 15 15 C 1.50135 * 110.78009 * 200.90840 * 14 12 11 16 16 C 1.52525 * 105.42020 * 97.70031 * 15 14 12 17 17 C 1.46241 * 114.27670 * 270.60029 * 16 15 14 18 18 N 1.50166 * 107.53541 * 58.40613 * 17 16 15 19 19 C 1.36933 * 120.53936 * 109.56981 * 18 17 16 20 20 H 1.08002 * 120.00155 * 156.68964 * 19 18 17 21 21 C 1.38820 * 119.99867 * 336.68886 * 19 18 17 22 22 N 1.31622 * 119.99948 * 340.42042 * 21 19 18 23 23 Si 1.86797 * 119.99904 * 160.41987 * 21 19 18 24 24 H 1.48503 * 109.46892 * 60.00079 * 23 21 19 25 25 H 1.48497 * 109.46960 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47158 * 300.00299 * 23 21 19 27 27 C 1.43430 * 118.92191 * 289.58566 * 18 17 16 28 28 C 1.38213 * 120.00053 * 270.27896 * 3 2 1 29 29 H 1.09001 * 109.47268 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47170 * 299.99719 * 1 2 3 31 31 H 1.09003 * 109.47013 * 59.99699 * 1 2 3 32 32 H 1.09002 * 109.47060 * 240.00048 * 2 1 3 33 33 H 1.08999 * 109.47470 * 120.00227 * 2 1 3 34 34 H 1.07995 * 120.00189 * 0.02562 * 4 3 2 35 35 H 1.08000 * 120.00028 * 180.02562 * 5 4 3 36 36 H 1.08002 * 119.99140 * 179.97438 * 6 5 4 37 37 H 1.09006 * 109.46956 * 330.00664 * 8 7 6 38 38 H 1.08997 * 109.47826 * 209.99952 * 8 7 6 39 39 H 0.97001 * 119.99939 * 0.02562 * 11 9 8 40 40 H 1.08995 * 109.21363 * 80.58468 * 14 12 11 41 41 H 1.09010 * 109.20774 * 321.22150 * 14 12 11 42 42 H 1.08999 * 110.24519 * 216.67798 * 15 14 12 43 43 H 1.08998 * 110.24604 * 338.58326 * 15 14 12 44 44 H 1.09004 * 108.52345 * 31.83671 * 16 15 14 45 45 H 1.08997 * 108.52070 * 149.35378 * 16 15 14 46 46 H 1.09004 * 109.84048 * 177.91399 * 17 16 15 47 47 H 1.08999 * 109.84382 * 298.89460 * 17 16 15 48 48 H 0.96992 * 119.99546 * 179.97438 * 22 21 19 49 49 H 1.09003 * 108.16241 * 213.28404 * 27 18 17 50 50 H 1.09000 * 108.16624 * 330.06667 * 27 18 17 51 51 H 1.07997 * 120.00591 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1974 5 6 2.7241 3.3754 1.1975 6 6 2.9545 4.0271 0.0001 7 6 2.7232 3.3761 -1.1969 8 6 2.9738 4.0866 -2.5019 9 6 4.3967 3.8493 -2.9379 10 8 5.1346 3.1697 -2.2562 11 7 4.8495 4.3923 -4.0854 12 6 6.2328 4.1621 -4.5089 13 1 6.8763 4.1248 -3.6299 14 6 6.6877 5.3214 -5.4290 15 6 7.8567 4.9040 -6.2734 16 6 7.2624 4.5062 -7.6206 17 6 6.8786 3.0983 -7.7163 18 7 5.8768 2.8277 -6.6309 19 6 4.5625 2.5979 -6.9386 20 1 3.9347 2.0500 -6.2514 21 6 4.0368 3.0692 -8.1338 22 7 4.6458 4.0383 -8.7839 23 14 2.4653 2.3281 -8.8197 24 1 1.3621 2.5165 -7.8435 25 1 2.1164 3.0017 -10.0963 26 1 2.6676 0.8775 -9.0640 27 6 6.3190 2.8141 -5.2665 28 6 2.2572 2.0743 -1.1969 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0831 1.5632 2.1326 35 1 2.9045 3.8843 2.1328 36 1 3.3146 5.0454 0.0002 37 1 2.8075 5.1559 -2.3712 38 1 2.2924 3.7030 -3.2613 39 1 4.2595 4.9362 -4.6304 40 1 6.9754 6.1748 -4.8150 41 1 5.8609 5.6094 -6.0784 42 1 8.5489 5.7368 -6.3975 43 1 8.3668 4.0551 -5.8182 44 1 6.3798 5.1189 -7.8042 45 1 7.9953 4.7191 -8.3988 46 1 6.4307 2.9024 -8.6905 47 1 7.7551 2.4656 -7.5771 48 1 4.2787 4.3673 -9.6192 49 1 5.7233 2.0803 -4.7235 50 1 7.3579 2.4848 -5.2492 51 1 2.0726 1.5669 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034277060.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:34 Heat of formation + Delta-G solvation = -2.973688 kcal Electronic energy + Delta-G solvation = -29081.865242 eV Core-core repulsion = 25366.997616 eV Total energy + Delta-G solvation = -3714.867626 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.87037 -38.90863 -37.55647 -34.47047 -34.07527 -33.08041 -32.33382 -30.98695 -29.99725 -29.44201 -27.42570 -26.00865 -24.03448 -23.93933 -22.98004 -22.01729 -20.80915 -20.00092 -19.32774 -19.07108 -16.71821 -16.57672 -16.37375 -15.73656 -15.58269 -15.01767 -14.89395 -14.63164 -14.19453 -13.89255 -13.70850 -13.64380 -13.34935 -13.24047 -13.05858 -12.81395 -12.36348 -12.21508 -12.03827 -11.84794 -11.73643 -11.72381 -11.50265 -11.29179 -11.25742 -10.85373 -10.77400 -10.73878 -10.71306 -10.51303 -10.10387 -9.95452 -9.71253 -9.45674 -9.31382 -9.24618 -8.66997 -8.58358 -8.49184 -8.27528 -6.69382 -5.81424 -3.19435 1.43652 1.50553 3.17577 3.34483 3.41729 3.44576 3.66033 4.05890 4.48046 4.70676 4.74649 4.89802 5.10599 5.17830 5.27077 5.29632 5.35085 5.37648 5.41354 5.46580 5.52440 5.56499 5.65303 5.67248 5.68146 5.81998 5.85025 5.97047 6.05588 6.15599 6.16321 6.19527 6.25449 6.29230 6.46874 6.53393 6.54795 6.63674 6.66172 6.73349 6.88000 6.93477 6.99150 7.04937 7.10995 7.27329 7.28901 7.61103 7.72595 7.98046 8.16236 8.41307 8.82360 9.17853 9.85479 10.39286 11.25292 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012331 B = 0.003511 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.224849 B = 7973.670972 C = 9467.155864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.082 4.082 4 C -0.124 4.124 5 C -0.119 4.119 6 C -0.112 4.112 7 C -0.051 4.051 8 C -0.107 4.107 9 C 0.513 3.487 10 O -0.549 6.549 11 N -0.703 5.703 12 C 0.118 3.882 13 H 0.069 0.931 14 C -0.109 4.109 15 C -0.112 4.112 16 C -0.129 4.129 17 C 0.164 3.836 18 N -0.583 5.583 19 C -0.239 4.239 20 H 0.063 0.937 21 C 0.002 3.998 22 N -0.900 5.900 23 Si 0.896 3.104 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.286 1.286 27 C 0.152 3.848 28 C -0.101 4.101 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.400 0.600 40 H 0.037 0.963 41 H 0.080 0.920 42 H 0.048 0.952 43 H 0.057 0.943 44 H 0.100 0.900 45 H 0.024 0.976 46 H 0.089 0.911 47 H 0.004 0.996 48 H 0.252 0.748 49 H 0.037 0.963 50 H 0.034 0.966 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.759 0.856 14.038 14.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.142 4.142 5 C -0.137 4.137 6 C -0.130 4.130 7 C -0.052 4.052 8 C -0.147 4.147 9 C 0.298 3.702 10 O -0.427 6.427 11 N -0.352 5.352 12 C 0.011 3.989 13 H 0.087 0.913 14 C -0.147 4.147 15 C -0.150 4.150 16 C -0.168 4.168 17 C 0.041 3.959 18 N -0.304 5.304 19 C -0.369 4.369 20 H 0.080 0.920 21 C -0.195 4.195 22 N -0.546 5.546 23 Si 0.726 3.274 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.213 1.213 27 C 0.022 3.978 28 C -0.119 4.119 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.234 0.766 40 H 0.056 0.944 41 H 0.098 0.902 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.118 0.882 45 H 0.043 0.957 46 H 0.107 0.893 47 H 0.023 0.977 48 H 0.062 0.938 49 H 0.055 0.945 50 H 0.053 0.947 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.278 0.425 14.322 14.698 hybrid contribution -1.101 0.120 -0.729 1.326 sum -4.379 0.545 13.593 14.291 Atomic orbital electron populations 1.21742 0.94864 1.01539 1.02139 1.20535 0.96017 0.92861 1.02861 1.19809 0.99286 0.96020 0.93093 1.20930 1.01011 0.95041 0.97229 1.21015 0.99981 0.95009 0.97678 1.20928 1.00103 0.99947 0.92023 1.19298 0.97840 0.94286 0.93738 1.20713 0.95899 1.02007 0.96070 1.20269 0.88882 0.79927 0.81111 1.90675 1.58120 1.39116 1.54811 1.46005 1.14234 1.52304 1.22660 1.22758 0.81200 0.98572 0.96415 0.91280 1.21663 0.99345 0.95891 0.97849 1.20974 0.96398 0.99755 0.97911 1.20996 1.00754 1.01607 0.93447 1.20172 0.89074 0.92320 0.94354 1.44216 1.05418 1.81712 0.99044 1.19093 0.86744 1.27487 1.03566 0.91953 1.24845 0.97777 0.96913 0.99996 1.69954 1.40946 1.25936 1.17718 0.86476 0.83471 0.79101 0.78339 1.21201 1.21796 1.21310 1.20770 0.97140 0.93242 0.86664 1.20894 0.99341 0.94010 0.97674 0.92542 0.92727 0.92468 0.90921 0.91224 0.86580 0.86395 0.86498 0.88470 0.87929 0.76572 0.94395 0.90193 0.93334 0.92481 0.88152 0.95741 0.89310 0.97744 0.93771 0.94479 0.94744 0.86220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.89 37.15 0.37 -0.94 16 2 C -0.09 -0.89 6.06 -27.89 -0.17 -1.06 16 3 C -0.08 -1.04 5.13 -104.62 -0.54 -1.58 16 4 C -0.12 -1.47 9.70 -39.58 -0.38 -1.85 16 5 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 6 C -0.11 -1.47 9.70 -39.58 -0.38 -1.85 16 7 C -0.05 -0.73 4.37 -104.63 -0.46 -1.19 16 8 C -0.11 -1.47 5.83 -29.04 -0.17 -1.64 16 9 C 0.51 8.95 7.65 -10.98 -0.08 8.86 16 10 O -0.55 -11.48 15.70 5.55 0.09 -11.39 16 11 N -0.70 -12.29 5.09 -51.92 -0.26 -12.56 16 12 C 0.12 2.21 2.91 -65.98 -0.19 2.02 16 13 H 0.07 1.32 7.58 -51.93 -0.39 0.93 16 14 C -0.11 -1.94 5.23 -27.19 -0.14 -2.09 16 15 C -0.11 -1.99 5.75 -28.40 -0.16 -2.15 16 16 C -0.13 -2.65 5.02 -30.19 -0.15 -2.80 16 17 C 0.16 3.71 5.25 -5.20 -0.03 3.68 16 18 N -0.58 -13.65 2.60 -175.10 -0.46 -14.11 16 19 C -0.24 -6.08 9.63 -15.06 -0.14 -6.23 16 20 H 0.06 1.63 7.89 -52.49 -0.41 1.22 16 21 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 22 N -0.90 -23.42 9.42 55.49 0.52 -22.90 16 23 Si 0.90 20.71 29.60 -169.99 -5.03 15.68 16 24 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 C 0.15 3.23 4.79 -4.68 -0.02 3.21 16 28 C -0.10 -1.44 9.36 -39.58 -0.37 -1.81 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 33 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 34 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.10 1.08 8.09 -51.93 -0.42 0.66 16 38 H 0.10 1.34 8.08 -51.93 -0.42 0.92 16 39 H 0.40 6.68 8.44 -40.82 -0.34 6.34 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 1.61 6.59 -51.92 -0.34 1.27 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.06 1.01 6.29 -51.93 -0.33 0.68 16 44 H 0.10 2.34 5.29 -51.93 -0.27 2.06 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.09 2.24 6.05 -51.93 -0.31 1.93 16 47 H 0.00 0.10 8.12 -51.93 -0.42 -0.33 16 48 H 0.25 6.53 8.31 -40.82 -0.34 6.19 16 49 H 0.04 0.86 7.83 -51.93 -0.41 0.46 16 50 H 0.03 0.71 6.88 -51.93 -0.36 0.35 16 51 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 397.65 15.07 5.99 5.99 Total: -1.00 -28.64 397.65 -11.30 -39.94 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -8.64 Total: 8.60 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -3.51 Total: -9.24 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: -0.20 Total: -49.57 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -28.64 -11.30 -39.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034277060.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.963 kcal (2) G-P(sol) polarization free energy of solvation -28.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds