Wall clock time and date at job start Tue Mar 31 2020 16:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47402 * 2 1 4 4 C 1.38256 * 119.99625 * 89.99994 * 3 2 1 5 5 C 1.38219 * 120.00018 * 179.97438 * 4 3 2 6 6 C 1.38263 * 119.99536 * 0.02562 * 5 4 3 7 7 C 1.38204 * 120.00371 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00393 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.47275 * 89.99867 * 8 7 6 10 10 O 1.21288 * 119.99929 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00270 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00023 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.24892 * 324.65814 * 12 11 9 14 14 C 1.54836 * 109.36023 * 205.00276 * 12 11 9 15 15 C 1.50135 * 110.78009 * 200.90840 * 14 12 11 16 16 C 1.52525 * 105.42020 * 97.70031 * 15 14 12 17 17 C 1.46241 * 114.27670 * 270.60029 * 16 15 14 18 18 N 1.50166 * 107.53541 * 58.40613 * 17 16 15 19 19 C 1.36933 * 120.53936 * 109.56981 * 18 17 16 20 20 H 1.08002 * 120.00155 * 156.68964 * 19 18 17 21 21 C 1.38820 * 119.99867 * 336.68886 * 19 18 17 22 22 N 1.31622 * 119.99948 * 340.42042 * 21 19 18 23 23 Si 1.86797 * 119.99904 * 160.41987 * 21 19 18 24 24 H 1.48503 * 109.46892 * 60.00079 * 23 21 19 25 25 H 1.48497 * 109.46960 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47158 * 300.00299 * 23 21 19 27 27 C 1.43430 * 118.92191 * 289.58566 * 18 17 16 28 28 C 1.38213 * 120.00053 * 270.27896 * 3 2 1 29 29 H 1.09001 * 109.47268 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47170 * 299.99719 * 1 2 3 31 31 H 1.09003 * 109.47013 * 59.99699 * 1 2 3 32 32 H 1.09002 * 109.47060 * 240.00048 * 2 1 3 33 33 H 1.08999 * 109.47470 * 120.00227 * 2 1 3 34 34 H 1.07995 * 120.00189 * 0.02562 * 4 3 2 35 35 H 1.08000 * 120.00028 * 180.02562 * 5 4 3 36 36 H 1.08002 * 119.99140 * 179.97438 * 6 5 4 37 37 H 1.09006 * 109.46956 * 330.00664 * 8 7 6 38 38 H 1.08997 * 109.47826 * 209.99952 * 8 7 6 39 39 H 0.97001 * 119.99939 * 0.02562 * 11 9 8 40 40 H 1.08995 * 109.21363 * 80.58468 * 14 12 11 41 41 H 1.09010 * 109.20774 * 321.22150 * 14 12 11 42 42 H 1.08999 * 110.24519 * 216.67798 * 15 14 12 43 43 H 1.08998 * 110.24604 * 338.58326 * 15 14 12 44 44 H 1.09004 * 108.52345 * 31.83671 * 16 15 14 45 45 H 1.08997 * 108.52070 * 149.35378 * 16 15 14 46 46 H 1.09004 * 109.84048 * 177.91399 * 17 16 15 47 47 H 1.08999 * 109.84382 * 298.89460 * 17 16 15 48 48 H 0.96992 * 119.99546 * 179.97438 * 22 21 19 49 49 H 1.09003 * 108.16241 * 213.28404 * 27 18 17 50 50 H 1.09000 * 108.16624 * 330.06667 * 27 18 17 51 51 H 1.07997 * 120.00591 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1974 5 6 2.7241 3.3754 1.1975 6 6 2.9545 4.0271 0.0001 7 6 2.7232 3.3761 -1.1969 8 6 2.9738 4.0866 -2.5019 9 6 4.3967 3.8493 -2.9379 10 8 5.1346 3.1697 -2.2562 11 7 4.8495 4.3923 -4.0854 12 6 6.2328 4.1621 -4.5089 13 1 6.8763 4.1248 -3.6299 14 6 6.6877 5.3214 -5.4290 15 6 7.8567 4.9040 -6.2734 16 6 7.2624 4.5062 -7.6206 17 6 6.8786 3.0983 -7.7163 18 7 5.8768 2.8277 -6.6309 19 6 4.5625 2.5979 -6.9386 20 1 3.9347 2.0500 -6.2514 21 6 4.0368 3.0692 -8.1338 22 7 4.6458 4.0383 -8.7839 23 14 2.4653 2.3281 -8.8197 24 1 1.3621 2.5165 -7.8435 25 1 2.1164 3.0017 -10.0963 26 1 2.6676 0.8775 -9.0640 27 6 6.3190 2.8141 -5.2665 28 6 2.2572 2.0743 -1.1969 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0831 1.5632 2.1326 35 1 2.9045 3.8843 2.1328 36 1 3.3146 5.0454 0.0002 37 1 2.8075 5.1559 -2.3712 38 1 2.2924 3.7030 -3.2613 39 1 4.2595 4.9362 -4.6304 40 1 6.9754 6.1748 -4.8150 41 1 5.8609 5.6094 -6.0784 42 1 8.5489 5.7368 -6.3975 43 1 8.3668 4.0551 -5.8182 44 1 6.3798 5.1189 -7.8042 45 1 7.9953 4.7191 -8.3988 46 1 6.4307 2.9024 -8.6905 47 1 7.7551 2.4656 -7.5771 48 1 4.2787 4.3673 -9.6192 49 1 5.7233 2.0803 -4.7235 50 1 7.3579 2.4848 -5.2492 51 1 2.0726 1.5669 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034277060.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:33 Heat of formation + Delta-G solvation = -16.154323 kcal Electronic energy + Delta-G solvation = -29082.436797 eV Core-core repulsion = 25366.997616 eV Total energy + Delta-G solvation = -3715.439181 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.11604 -40.14831 -39.11523 -35.81972 -35.29135 -34.73361 -33.38718 -32.83270 -31.52534 -30.36811 -28.61835 -27.77727 -25.57625 -24.81089 -24.72171 -23.06911 -22.07625 -21.38695 -20.78256 -20.56053 -18.54870 -17.95319 -17.45811 -17.00452 -16.88459 -16.65785 -16.15593 -15.93461 -15.68876 -15.42379 -15.03832 -14.82537 -14.60168 -14.46085 -14.06548 -14.03958 -13.78420 -13.74107 -13.40783 -13.25746 -13.19214 -12.94472 -12.81146 -12.63393 -12.59462 -12.36920 -12.31682 -12.12869 -11.88600 -11.79288 -11.68752 -11.62597 -11.29512 -11.13415 -10.91945 -10.77496 -10.43486 -9.89682 -9.66149 -9.47127 -8.57670 -7.78499 -5.17962 0.45354 0.52729 1.47026 1.52055 1.56273 1.79086 2.42952 2.55624 2.95435 3.34418 3.62499 3.71529 3.83138 3.95989 4.00544 4.13760 4.18749 4.23945 4.29025 4.38896 4.44841 4.49983 4.55137 4.58413 4.61755 4.64601 4.70346 4.70945 4.79019 4.85799 4.92270 5.02202 5.07291 5.07795 5.21316 5.22629 5.23273 5.32965 5.36734 5.37181 5.48681 5.58781 5.61416 5.69477 5.70512 5.75265 5.80247 5.81494 6.16560 6.23635 6.44754 6.76433 7.22178 7.42381 7.93926 8.45179 9.24987 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012331 B = 0.003511 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.224849 B = 7973.670972 C = 9467.155864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 C -0.090 4.090 4 C -0.128 4.128 5 C -0.121 4.121 6 C -0.125 4.125 7 C -0.070 4.070 8 C -0.099 4.099 9 C 0.512 3.488 10 O -0.585 6.585 11 N -0.702 5.702 12 C 0.126 3.874 13 H 0.070 0.930 14 C -0.099 4.099 15 C -0.105 4.105 16 C -0.121 4.121 17 C 0.166 3.834 18 N -0.592 5.592 19 C -0.246 4.246 20 H 0.048 0.952 21 C -0.030 4.030 22 N -0.910 5.910 23 Si 0.946 3.054 24 H -0.280 1.280 25 H -0.294 1.294 26 H -0.293 1.293 27 C 0.157 3.843 28 C -0.126 4.126 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.106 0.894 39 H 0.405 0.595 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.073 0.927 45 H 0.035 0.965 46 H 0.059 0.941 47 H 0.016 0.984 48 H 0.247 0.753 49 H 0.009 0.991 50 H 0.041 0.959 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.829 1.665 15.699 16.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 C -0.090 4.090 4 C -0.146 4.146 5 C -0.138 4.138 6 C -0.143 4.143 7 C -0.071 4.071 8 C -0.139 4.139 9 C 0.299 3.701 10 O -0.466 6.466 11 N -0.351 5.351 12 C 0.018 3.982 13 H 0.088 0.912 14 C -0.137 4.137 15 C -0.143 4.143 16 C -0.160 4.160 17 C 0.043 3.957 18 N -0.314 5.314 19 C -0.376 4.376 20 H 0.066 0.934 21 C -0.227 4.227 22 N -0.555 5.555 23 Si 0.776 3.224 24 H -0.207 1.207 25 H -0.220 1.220 26 H -0.220 1.220 27 C 0.027 3.973 28 C -0.145 4.145 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.160 0.840 35 H 0.163 0.837 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.124 0.876 39 H 0.240 0.760 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.053 0.947 46 H 0.077 0.923 47 H 0.034 0.966 48 H 0.057 0.943 49 H 0.027 0.973 50 H 0.059 0.941 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.356 1.246 15.987 16.383 hybrid contribution -1.048 -0.205 -1.214 1.617 sum -4.404 1.041 14.773 15.450 Atomic orbital electron populations 1.21709 0.93741 1.02422 1.01969 1.20581 0.96965 0.91663 1.03088 1.20108 0.98930 0.97020 0.92982 1.21285 1.00208 0.95229 0.97864 1.21397 0.98882 0.95153 0.98400 1.21191 1.00258 1.00771 0.92088 1.19440 0.98745 0.94558 0.94319 1.20703 0.93098 1.03910 0.96142 1.20886 0.90031 0.78750 0.80432 1.90648 1.59482 1.40631 1.55859 1.46004 1.13939 1.52286 1.22833 1.22524 0.82104 0.97420 0.96139 0.91209 1.21544 0.98559 0.96107 0.97452 1.20945 0.96630 1.00837 0.95895 1.20812 1.00040 0.99446 0.95664 1.20117 0.88858 0.94061 0.92673 1.44260 1.04942 1.82185 1.00004 1.19074 0.87559 1.27327 1.03632 0.93377 1.25299 0.99897 0.97290 1.00199 1.70083 1.41633 1.26337 1.17471 0.85691 0.81315 0.77831 0.77585 1.20653 1.22042 1.21996 1.20730 0.96738 0.94201 0.85624 1.21008 1.00845 0.94556 0.98060 0.91135 0.91999 0.93506 0.91925 0.89739 0.84020 0.83686 0.85152 0.85539 0.87598 0.76050 0.91794 0.92523 0.90542 0.92225 0.90860 0.94680 0.92289 0.96620 0.94314 0.97261 0.94094 0.87366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.89 71.98 0.71 -1.67 16 2 C -0.09 -1.72 6.06 29.85 0.18 -1.54 16 3 C -0.09 -2.24 5.13 -19.87 -0.10 -2.34 16 4 C -0.13 -2.79 9.70 22.27 0.22 -2.57 16 5 C -0.12 -2.63 10.05 22.27 0.22 -2.40 16 6 C -0.13 -3.12 9.70 22.27 0.22 -2.91 16 7 C -0.07 -1.98 4.37 -19.87 -0.09 -2.07 16 8 C -0.10 -2.68 5.83 29.10 0.17 -2.51 16 9 C 0.51 17.86 7.65 87.66 0.67 18.53 16 10 O -0.59 -24.73 15.70 -3.06 -0.05 -24.78 16 11 N -0.70 -24.40 5.09 -436.55 -2.22 -26.62 16 12 C 0.13 4.64 2.91 46.26 0.13 4.77 16 13 H 0.07 2.60 7.58 -2.39 -0.02 2.58 16 14 C -0.10 -3.34 5.23 30.30 0.16 -3.18 16 15 C -0.11 -3.49 5.75 29.51 0.17 -3.32 16 16 C -0.12 -4.85 5.02 28.36 0.14 -4.71 16 17 C 0.17 7.52 5.25 83.58 0.44 7.96 16 18 N -0.59 -28.07 2.60 -707.90 -1.84 -29.91 16 19 C -0.25 -12.73 9.63 84.04 0.81 -11.92 16 20 H 0.05 2.60 7.89 -2.91 -0.02 2.57 16 21 C -0.03 -1.56 4.91 84.86 0.42 -1.15 16 22 N -0.91 -47.87 9.42 21.65 0.20 -47.66 16 23 Si 0.95 43.02 29.60 68.60 2.03 45.05 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 25 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 26 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 27 C 0.16 6.71 4.79 87.59 0.42 7.13 16 28 C -0.13 -3.66 9.36 22.27 0.21 -3.45 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 1.36 8.09 -2.39 -0.02 1.34 16 33 H 0.08 1.42 8.09 -2.39 -0.02 1.40 16 34 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 35 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 36 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 37 H 0.13 2.61 8.09 -2.38 -0.02 2.60 16 38 H 0.11 2.77 8.08 -2.39 -0.02 2.75 16 39 H 0.40 13.40 8.44 -92.71 -0.78 12.62 16 40 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.06 2.23 6.59 -2.38 -0.02 2.21 16 42 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.06 1.97 6.29 -2.39 -0.02 1.95 16 44 H 0.07 3.40 5.29 -2.38 -0.01 3.39 16 45 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.06 3.03 6.05 -2.39 -0.01 3.01 16 47 H 0.02 0.67 8.12 -2.39 -0.02 0.65 16 48 H 0.25 12.93 8.31 -92.71 -0.77 12.16 16 49 H 0.01 0.44 7.83 -2.39 -0.02 0.42 16 50 H 0.04 1.67 6.88 -2.39 -0.02 1.66 16 51 H 0.11 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -62.17 397.65 3.35 -58.82 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 0.13 Total: 32.46 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: 5.10 Total: -7.35 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -3.86 Total: -104.20 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.05 Total: -24.78 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -62.17 3.35 -58.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034277060.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.663 kcal (2) G-P(sol) polarization free energy of solvation -62.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds