Wall clock time and date at job start Tue Mar 31 2020 16:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.47133 * 2 1 4 4 C 1.38240 * 119.99627 * 90.00206 * 3 2 1 5 5 C 1.38231 * 119.99504 * 179.97438 * 4 3 2 6 6 C 1.38233 * 120.00399 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.00133 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.47450 * 90.00008 * 7 6 5 9 9 O 1.21275 * 119.99707 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99697 * 180.02562 * 8 7 6 11 11 C 1.46508 * 119.99278 * 179.97438 * 10 8 7 12 12 H 1.08993 * 109.37164 * 35.25135 * 11 10 8 13 13 C 1.50883 * 109.36120 * 154.99910 * 11 10 8 14 14 C 1.52567 * 109.35575 * 212.07144 * 13 11 10 15 15 C 1.47087 * 114.33093 * 274.99165 * 14 13 11 16 16 C 1.54871 * 110.32487 * 62.79788 * 15 14 13 17 17 N 1.44571 * 109.59928 * 288.73845 * 16 15 14 18 18 C 1.36940 * 118.64251 * 270.70417 * 17 16 15 19 19 H 1.08000 * 120.00444 * 145.31959 * 18 17 16 20 20 C 1.38816 * 119.99857 * 325.31545 * 18 17 16 21 21 N 1.31619 * 119.99734 * 330.03410 * 20 18 17 22 22 Si 1.86795 * 119.99913 * 150.03079 * 20 18 17 23 23 H 1.48494 * 109.47128 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.47157 * 300.00280 * 22 20 18 25 25 H 1.48499 * 109.47069 * 60.00357 * 22 20 18 26 26 C 1.47601 * 122.71689 * 90.98352 * 17 16 15 27 27 C 1.38236 * 119.99798 * 0.25201 * 6 5 4 28 28 C 1.38229 * 119.99918 * 359.47554 * 27 6 5 29 29 H 1.08997 * 109.47483 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47181 * 300.00150 * 1 2 3 31 31 H 1.08997 * 109.47076 * 59.99654 * 1 2 3 32 32 H 1.08998 * 109.46793 * 239.99669 * 2 1 3 33 33 H 1.08998 * 109.46557 * 120.00286 * 2 1 3 34 34 H 1.07993 * 120.00438 * 359.97266 * 4 3 2 35 35 H 1.08007 * 120.00072 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.47149 * 329.99296 * 7 6 5 37 37 H 1.09010 * 109.47130 * 209.99751 * 7 6 5 38 38 H 0.96994 * 120.00540 * 359.97438 * 10 8 7 39 39 H 1.09003 * 109.49115 * 92.11538 * 13 11 10 40 40 H 1.08999 * 109.51177 * 332.05012 * 13 11 10 41 41 H 1.08997 * 108.51444 * 153.73241 * 14 13 11 42 42 H 1.09001 * 108.39135 * 36.15657 * 14 13 11 43 43 H 1.08999 * 109.32984 * 302.53862 * 15 14 13 44 44 H 1.08999 * 109.18995 * 182.97443 * 15 14 13 45 45 H 1.09002 * 109.44705 * 168.69405 * 16 15 14 46 46 H 1.08996 * 109.44605 * 48.77483 * 16 15 14 47 47 H 0.97000 * 120.00320 * 355.10695 * 21 20 18 48 48 H 1.09000 * 108.95100 * 78.29056 * 26 17 16 49 49 H 1.09000 * 108.95211 * 196.92687 * 26 17 16 50 50 H 1.08003 * 120.00036 * 179.73111 * 27 6 5 51 51 H 1.08001 * 120.00227 * 180.29739 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7241 3.3755 1.1972 6 6 2.9544 4.0272 0.0001 7 6 3.4568 5.4479 0.0001 8 6 4.9638 5.4480 0.0001 9 8 5.5702 4.3978 0.0005 10 7 5.6375 6.6153 0.0006 11 6 7.1026 6.6153 0.0012 12 1 7.4643 5.7757 -0.5924 13 6 7.6031 7.9055 -0.5999 14 6 8.9217 7.6486 -1.3229 15 6 10.1084 7.6987 -0.4553 16 6 10.0369 6.5853 0.6188 17 7 9.0147 6.9113 1.5879 18 6 9.3619 7.6578 2.6822 19 1 8.6604 8.3664 3.0972 20 6 10.6154 7.5036 3.2583 21 7 11.2284 6.3404 3.1988 22 14 11.4323 8.9470 4.1176 23 1 12.7548 8.5252 4.6449 24 1 11.6160 10.0592 3.1509 25 1 10.5751 9.4040 5.2409 26 6 7.6138 6.4677 1.4496 27 6 2.7185 3.3775 -1.1971 28 6 2.2626 2.0725 -1.1971 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.0824 1.5634 2.1325 35 1 2.9037 3.8848 2.1326 36 1 3.0933 5.9618 0.8901 37 1 3.0934 5.9618 -0.8899 38 1 5.1526 7.4553 0.0007 39 1 7.7592 8.6389 0.1913 40 1 6.8678 8.2862 -1.3088 41 1 9.0363 8.3944 -2.1094 42 1 8.8734 6.6632 -1.7865 43 1 10.1557 8.6709 0.0355 44 1 11.0025 7.5574 -1.0625 45 1 11.0007 6.5034 1.1214 46 1 9.7949 5.6357 0.1416 47 1 10.7758 5.5726 2.8158 48 1 7.5424 5.4220 1.7489 49 1 6.9860 7.0666 2.1094 50 1 2.8944 3.8881 -2.1324 51 1 2.0829 1.5633 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034421697.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:37 Heat of formation + Delta-G solvation = -11.665522 kcal Electronic energy + Delta-G solvation = -28286.017013 eV Core-core repulsion = 24570.772481 eV Total energy + Delta-G solvation = -3715.244532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.13696 -39.17400 -37.73442 -34.91803 -34.56272 -33.44251 -31.68203 -30.98800 -30.84311 -29.83485 -27.31716 -25.79305 -24.45765 -23.63886 -22.82020 -22.71587 -20.94608 -20.38674 -19.81501 -19.20594 -17.20400 -16.90526 -16.46716 -15.98818 -15.78223 -15.20514 -15.05693 -14.52399 -14.32114 -13.95130 -13.85990 -13.73554 -13.65967 -13.41443 -13.39521 -13.02744 -12.97602 -12.49480 -12.27671 -12.20007 -12.11488 -11.84348 -11.71146 -11.39553 -11.14849 -10.97289 -10.94046 -10.74142 -10.62928 -10.40339 -10.15403 -10.01962 -9.97568 -9.80822 -9.68615 -9.30057 -8.95119 -8.83147 -8.57715 -8.24836 -6.74808 -6.02023 -3.29502 1.23793 1.37622 2.82841 3.30900 3.49844 3.53340 3.71350 3.78345 4.50117 4.61189 4.63235 4.68240 4.86649 4.92941 4.99143 5.10869 5.17342 5.18452 5.29873 5.30978 5.31858 5.37305 5.42795 5.51110 5.55731 5.60291 5.63484 5.72296 5.84833 5.88285 5.90907 5.99930 6.01438 6.08176 6.32073 6.33974 6.39643 6.48108 6.52686 6.53845 6.59666 6.71101 6.73053 6.81160 6.86983 6.94829 6.96395 7.18887 7.41514 7.72997 8.11778 8.44935 8.62678 9.21060 9.88464 10.29135 11.16749 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018922 B = 0.002406 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.415325 B =11634.108976 C =12312.745815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.116 4.116 5 C -0.101 4.101 6 C -0.066 4.066 7 C -0.103 4.103 8 C 0.510 3.490 9 O -0.529 6.529 10 N -0.724 5.724 11 C 0.132 3.868 12 H 0.078 0.922 13 C -0.113 4.113 14 C -0.098 4.098 15 C -0.142 4.142 16 C 0.143 3.857 17 N -0.587 5.587 18 C -0.357 4.357 19 H 0.049 0.951 20 C -0.019 4.019 21 N -0.899 5.899 22 Si 1.060 2.940 23 H -0.286 1.286 24 H -0.293 1.293 25 H -0.293 1.293 26 C 0.143 3.857 27 C -0.103 4.103 28 C -0.118 4.118 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.396 0.604 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.045 0.955 42 H 0.047 0.953 43 H 0.064 0.936 44 H 0.046 0.954 45 H 0.079 0.921 46 H 0.023 0.977 47 H 0.270 0.730 48 H 0.017 0.983 49 H 0.049 0.951 50 H 0.118 0.882 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.509 -4.130 -9.889 23.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.086 4.086 4 C -0.135 4.135 5 C -0.119 4.119 6 C -0.067 4.067 7 C -0.143 4.143 8 C 0.295 3.705 9 O -0.404 6.404 10 N -0.375 5.375 11 C 0.027 3.973 12 H 0.096 0.904 13 C -0.151 4.151 14 C -0.136 4.136 15 C -0.182 4.182 16 C 0.015 3.985 17 N -0.309 5.309 18 C -0.486 4.486 19 H 0.067 0.933 20 C -0.223 4.223 21 N -0.538 5.538 22 Si 0.889 3.111 23 H -0.212 1.212 24 H -0.220 1.220 25 H -0.220 1.220 26 C 0.016 3.984 27 C -0.121 4.121 28 C -0.136 4.136 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.230 0.770 39 H 0.098 0.902 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.097 0.903 46 H 0.042 0.958 47 H 0.081 0.919 48 H 0.035 0.965 49 H 0.067 0.933 50 H 0.136 0.864 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.682 -4.434 -9.106 21.251 hybrid contribution -1.642 0.040 -0.757 1.809 sum -20.324 -4.394 -9.863 23.014 Atomic orbital electron populations 1.21744 0.94833 1.01554 1.02154 1.20537 0.96036 0.92847 1.02849 1.19858 0.99381 0.96073 0.93266 1.20955 1.00259 0.94757 0.97480 1.20981 0.98500 0.94931 0.97467 1.19256 0.99015 0.94809 0.93578 1.20695 0.93029 0.95577 1.05012 1.20473 0.89407 0.84108 0.76496 1.90744 1.70108 1.31166 1.48424 1.46217 1.07799 1.08078 1.75455 1.21501 0.77731 0.98629 0.99465 0.90407 1.21248 0.96659 0.97409 0.99803 1.20260 0.95092 1.00381 0.97901 1.21371 0.95636 1.02967 0.98259 1.20930 0.95500 0.92786 0.89253 1.43570 1.02944 1.62083 1.22324 1.19846 1.03235 1.16936 1.08614 0.93328 1.25837 0.97265 1.00984 0.98208 1.70764 1.42696 0.99354 1.40964 0.83607 0.76336 0.75298 0.75832 1.21161 1.21999 1.22016 1.21579 0.87391 0.97237 0.92146 1.20928 0.98981 0.94918 0.97278 1.20923 1.00536 0.94735 0.97407 0.92516 0.92573 0.92629 0.91124 0.91065 0.86229 0.86179 0.88063 0.88236 0.77043 0.90159 0.92905 0.93657 0.93445 0.91751 0.93524 0.90321 0.95835 0.91937 0.96491 0.93259 0.86371 0.86330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.90 37.16 0.37 -0.64 16 2 C -0.09 -0.70 6.06 -27.88 -0.17 -0.87 16 3 C -0.09 -0.92 5.13 -104.62 -0.54 -1.46 16 4 C -0.12 -1.32 9.70 -39.58 -0.38 -1.70 16 5 C -0.10 -1.23 9.70 -39.59 -0.38 -1.61 16 6 C -0.07 -0.80 4.37 -104.63 -0.46 -1.26 16 7 C -0.10 -1.08 5.83 -29.03 -0.17 -1.25 16 8 C 0.51 7.59 7.78 -10.98 -0.09 7.50 16 9 O -0.53 -10.46 15.70 5.56 0.09 -10.37 16 10 N -0.72 -10.14 4.98 -54.17 -0.27 -10.41 16 11 C 0.13 2.33 2.27 -68.31 -0.15 2.18 16 12 H 0.08 1.55 6.75 -51.93 -0.35 1.20 16 13 C -0.11 -1.83 5.07 -28.02 -0.14 -1.97 16 14 C -0.10 -1.65 5.16 -29.79 -0.15 -1.81 16 15 C -0.14 -2.82 5.74 -28.58 -0.16 -2.99 16 16 C 0.14 3.37 4.89 -4.09 -0.02 3.35 16 17 N -0.59 -14.60 2.01 -171.87 -0.35 -14.94 16 18 C -0.36 -9.83 9.17 -15.06 -0.14 -9.97 16 19 H 0.05 1.36 7.97 -52.49 -0.42 0.94 16 20 C -0.02 -0.54 4.68 -17.43 -0.08 -0.63 16 21 N -0.90 -26.96 12.18 55.49 0.68 -26.29 16 22 Si 1.06 25.09 30.01 -169.99 -5.10 19.99 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 C 0.14 3.16 5.86 -2.76 -0.02 3.14 16 27 C -0.10 -1.19 9.70 -39.59 -0.38 -1.57 16 28 C -0.12 -1.28 9.70 -39.59 -0.38 -1.66 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 33 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 34 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 36 H 0.10 0.86 8.09 -51.93 -0.42 0.44 16 37 H 0.10 0.77 8.08 -51.92 -0.42 0.35 16 38 H 0.40 4.19 8.54 -40.82 -0.35 3.84 16 39 H 0.08 1.47 7.49 -51.93 -0.39 1.08 16 40 H 0.05 0.70 7.94 -51.93 -0.41 0.29 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.79 7.35 -51.93 -0.38 0.41 16 43 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.08 2.11 5.28 -51.93 -0.27 1.84 16 46 H 0.02 0.54 8.06 -51.93 -0.42 0.12 16 47 H 0.27 8.29 7.39 -40.82 -0.30 7.98 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.05 1.08 7.86 -51.93 -0.41 0.68 16 50 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 51 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 403.11 15.07 6.07 6.07 Total: -1.00 -33.15 403.11 -11.17 -44.32 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -8.83 Total: 4.85 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -3.46 Total: -13.22 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: 0.06 Total: -51.64 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.10 Total: 19.99 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.15 -11.17 -44.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034421697.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.649 kcal (2) G-P(sol) polarization free energy of solvation -33.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds