Wall clock time and date at job start Tue Mar 31 2020 16:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47593 * 2 1 4 4 C 1.38241 * 119.99933 * 269.73053 * 3 2 1 5 5 C 1.38234 * 119.99625 * 179.76461 * 4 3 2 6 6 C 1.38237 * 120.00203 * 0.50249 * 5 4 3 7 7 C 1.50695 * 119.99827 * 179.72822 * 6 5 4 8 8 C 1.50706 * 109.46997 * 270.02257 * 7 6 5 9 9 O 1.21282 * 119.99555 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00041 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99765 * 180.02562 * 10 8 7 12 12 H 1.09003 * 108.45866 * 327.28254 * 11 10 8 13 13 C 1.52529 * 108.51930 * 209.71646 * 11 10 8 14 14 C 1.50127 * 105.41960 * 149.35034 * 13 11 10 15 15 C 1.54846 * 110.81208 * 97.67881 * 14 13 11 16 16 C 1.54899 * 110.14308 * 321.13826 * 15 14 13 17 17 N 1.43432 * 116.08126 * 318.63764 * 16 15 14 18 18 C 1.36942 * 120.53451 * 271.59708 * 17 16 15 19 19 H 1.07990 * 120.00291 * 336.45362 * 18 17 16 20 20 C 1.38815 * 119.99831 * 156.46518 * 18 17 16 21 21 N 1.31619 * 119.99862 * 338.77211 * 20 18 17 22 22 Si 1.86800 * 120.00281 * 158.78003 * 20 18 17 23 23 H 1.48503 * 109.47272 * 89.99199 * 22 20 18 24 24 H 1.48499 * 109.47177 * 209.99423 * 22 20 18 25 25 H 1.48503 * 109.46690 * 329.99685 * 22 20 18 26 26 C 1.46234 * 108.52554 * 84.99793 * 11 10 8 27 27 C 1.38234 * 119.99978 * 359.75099 * 6 5 4 28 28 C 1.38230 * 120.00301 * 89.99621 * 3 2 1 29 29 H 1.09004 * 109.46979 * 59.99857 * 1 2 3 30 30 H 1.08993 * 109.47606 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47177 * 300.00392 * 1 2 3 32 32 H 1.09001 * 109.46960 * 240.00012 * 2 1 3 33 33 H 1.08994 * 109.47045 * 120.00258 * 2 1 3 34 34 H 1.08003 * 119.99976 * 359.97438 * 4 3 2 35 35 H 1.08002 * 119.99568 * 180.22784 * 5 4 3 36 36 H 1.09004 * 109.47725 * 30.01919 * 7 6 5 37 37 H 1.09001 * 109.47246 * 150.02379 * 7 6 5 38 38 H 0.97002 * 119.99857 * 359.97438 * 10 8 7 39 39 H 1.09003 * 110.24937 * 268.32693 * 13 11 10 40 40 H 1.09001 * 110.25015 * 30.38057 * 13 11 10 41 41 H 1.08997 * 109.20641 * 337.34491 * 14 13 11 42 42 H 1.08992 * 109.17829 * 218.00321 * 14 13 11 43 43 H 1.09001 * 109.36212 * 200.92685 * 15 14 13 44 44 H 1.09009 * 109.24443 * 81.26896 * 15 14 13 45 45 H 1.09001 * 108.16045 * 196.91935 * 16 15 14 46 46 H 1.09001 * 108.16178 * 80.34989 * 16 15 14 47 47 H 0.97001 * 120.00088 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.84265 * 299.14708 * 26 11 10 49 49 H 1.08990 * 109.84811 * 60.13798 * 26 11 10 50 50 H 1.07992 * 120.00232 * 179.97438 * 27 6 5 51 51 H 1.08001 * 119.99755 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0705 -1.1972 5 6 2.7244 3.3754 -1.1972 6 6 2.9548 4.0271 0.0000 7 6 3.4581 5.4475 0.0000 8 6 4.9651 5.4465 -0.0001 9 8 5.5708 4.3957 -0.0006 10 7 5.6398 6.6133 0.0004 11 6 7.1048 6.6122 -0.0003 12 1 7.4495 5.7417 0.5579 13 6 7.5904 7.8675 0.7173 14 6 8.8978 7.4858 1.3488 15 6 10.0875 7.9348 0.4653 16 6 9.7505 7.7219 -1.0316 17 7 9.0702 6.5019 -1.3574 18 6 9.7784 5.3647 -1.6410 19 1 10.7967 5.4364 -1.9931 20 6 9.1871 4.1196 -1.4761 21 7 8.1466 3.9853 -0.6813 22 14 9.8682 2.6347 -2.3819 23 1 10.9047 1.9774 -1.5459 24 1 8.7692 1.6739 -2.6541 25 1 10.4724 3.0726 -3.6659 26 6 7.5687 6.4919 -1.3818 27 6 2.7241 3.3755 1.1972 28 6 2.2628 2.0724 1.1971 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0927 1.5598 -2.1325 35 1 2.9051 3.8842 -2.1325 36 1 3.0951 5.9616 -0.8900 37 1 3.0951 5.9616 0.8900 38 1 5.1553 7.4536 0.0004 39 1 7.7388 8.6771 0.0026 40 1 6.8743 8.1652 1.4832 41 1 8.9329 6.4036 1.4744 42 1 8.9764 7.9628 2.3256 43 1 10.9704 7.3502 0.7236 44 1 10.2888 8.9912 0.6435 45 1 10.6818 7.7530 -1.5972 46 1 9.1306 8.5552 -1.3622 47 1 7.7336 3.1153 -0.5658 48 1 7.2119 5.5559 -1.8118 49 1 7.2026 7.3335 -1.9698 50 1 2.9045 3.8844 2.1324 51 1 2.0831 1.5632 2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034421701.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:41 Heat of formation + Delta-G solvation = 8.882158 kcal Electronic energy + Delta-G solvation = -29246.788334 eV Core-core repulsion = 25532.434816 eV Total energy + Delta-G solvation = -3714.353518 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -39.71556 -38.86473 -37.31255 -34.53620 -33.85814 -33.05385 -31.31225 -30.72201 -30.63325 -29.56920 -26.96973 -25.95002 -24.13243 -23.44597 -22.55276 -22.53503 -20.68619 -19.90630 -19.59994 -18.69068 -16.62540 -16.30670 -16.07158 -15.64374 -15.37688 -14.86760 -14.76375 -14.30778 -14.06393 -13.74859 -13.67662 -13.54464 -13.27465 -13.20492 -13.00080 -12.71271 -12.47140 -12.20240 -11.89418 -11.80899 -11.66175 -11.58438 -11.23385 -11.19880 -11.13724 -10.77072 -10.69637 -10.63993 -10.58314 -10.16394 -10.08517 -9.73910 -9.69261 -9.48186 -9.32136 -8.86672 -8.68086 -8.39596 -8.24382 -8.02152 -6.56137 -5.54440 -2.98436 1.52557 1.64469 3.49508 3.54439 3.58343 3.59706 3.79138 4.20161 4.67690 4.76121 4.86180 4.99450 5.11881 5.17564 5.29408 5.44640 5.47137 5.49527 5.51358 5.61390 5.63267 5.66565 5.70891 5.75033 5.77136 5.81015 5.89725 5.94577 6.05617 6.17113 6.24583 6.27715 6.28606 6.37184 6.46700 6.57810 6.60860 6.66437 6.77705 6.83242 6.91432 7.00023 7.04570 7.16946 7.21788 7.24101 7.40839 7.69832 7.74173 8.00729 8.43549 8.60062 9.18137 9.39078 10.02621 10.54980 11.50008 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013400 B = 0.003547 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.082015 B = 7892.141565 C = 9374.101404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.090 4.090 4 C -0.117 4.117 5 C -0.100 4.100 6 C -0.057 4.057 7 C -0.106 4.106 8 C 0.491 3.509 9 O -0.476 6.476 10 N -0.738 5.738 11 C 0.129 3.871 12 H 0.129 0.871 13 C -0.122 4.122 14 C -0.105 4.105 15 C -0.144 4.144 16 C 0.158 3.842 17 N -0.581 5.581 18 C -0.279 4.279 19 H 0.064 0.936 20 C 0.012 3.988 21 N -0.857 5.857 22 Si 0.885 3.115 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.283 1.283 26 C 0.159 3.841 27 C -0.102 4.102 28 C -0.118 4.118 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.380 0.620 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.035 0.965 43 H 0.050 0.950 44 H 0.041 0.959 45 H 0.031 0.969 46 H 0.025 0.975 47 H 0.262 0.738 48 H 0.093 0.907 49 H 0.002 0.998 50 H 0.117 0.883 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.068 2.505 3.449 15.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.135 4.135 5 C -0.118 4.118 6 C -0.058 4.058 7 C -0.146 4.146 8 C 0.274 3.726 9 O -0.347 6.347 10 N -0.391 5.391 11 C 0.026 3.974 12 H 0.147 0.853 13 C -0.160 4.160 14 C -0.143 4.143 15 C -0.186 4.186 16 C 0.029 3.971 17 N -0.302 5.302 18 C -0.408 4.408 19 H 0.082 0.918 20 C -0.190 4.190 21 N -0.498 5.498 22 Si 0.715 3.285 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.209 1.209 26 C 0.035 3.965 27 C -0.120 4.120 28 C -0.136 4.136 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.211 0.789 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.054 0.946 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.049 0.951 46 H 0.043 0.957 47 H 0.073 0.927 48 H 0.111 0.889 49 H 0.020 0.980 50 H 0.135 0.865 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.699 1.507 3.466 15.177 hybrid contribution 0.216 -0.302 -0.306 0.481 sum -14.483 1.204 3.160 14.873 Atomic orbital electron populations 1.21738 0.95017 1.01355 1.02080 1.20515 0.95860 0.93067 1.02719 1.19793 0.99925 0.95923 0.93318 1.20911 1.00496 0.94799 0.97288 1.20938 0.98569 0.94839 0.97471 1.19286 0.98057 0.95064 0.93352 1.20752 0.94920 0.94906 1.04038 1.20306 0.88502 0.85116 0.78692 1.90933 1.68869 1.30013 1.44897 1.46465 1.08627 1.07145 1.76817 1.21134 0.76294 0.99294 1.00711 0.85347 1.21353 0.97364 0.98185 0.99119 1.21285 0.94179 1.02329 0.96487 1.22914 0.97724 0.98043 0.99883 1.20403 0.95593 0.89230 0.91894 1.44032 1.00581 1.07104 1.78470 1.18966 0.98091 0.83694 1.40038 0.91797 1.24979 0.98628 0.97067 0.98288 1.69837 1.22412 1.23952 1.33564 0.86595 0.77895 0.83829 0.80161 1.21755 1.21789 1.20879 1.20409 0.83164 0.99656 0.93313 1.20903 0.98924 0.94867 0.97348 1.20885 1.00671 0.94822 0.97232 0.92651 0.92683 0.92663 0.91210 0.91231 0.86540 0.86409 0.88994 0.89076 0.78851 0.92184 0.92960 0.90728 0.94594 0.93066 0.94032 0.95099 0.95699 0.92664 0.88852 0.97992 0.86506 0.86577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.90 37.16 0.37 -0.89 16 2 C -0.08 -0.88 6.07 -27.88 -0.17 -1.05 16 3 C -0.09 -1.18 5.13 -104.62 -0.54 -1.72 16 4 C -0.12 -1.62 9.70 -39.58 -0.38 -2.01 16 5 C -0.10 -1.49 9.70 -39.58 -0.38 -1.87 16 6 C -0.06 -0.85 4.37 -104.63 -0.46 -1.31 16 7 C -0.11 -1.42 5.83 -29.03 -0.17 -1.59 16 8 C 0.49 9.01 7.74 -10.98 -0.08 8.92 16 9 O -0.48 -11.29 13.62 5.56 0.08 -11.21 16 10 N -0.74 -12.61 4.87 -57.21 -0.28 -12.89 16 11 C 0.13 2.67 1.84 -71.39 -0.13 2.54 16 12 H 0.13 3.30 4.55 -51.93 -0.24 3.06 16 13 C -0.12 -2.16 5.25 -28.40 -0.15 -2.31 16 14 C -0.10 -2.00 5.65 -27.19 -0.15 -2.15 16 15 C -0.14 -2.74 6.41 -24.76 -0.16 -2.90 16 16 C 0.16 3.33 5.17 -4.66 -0.02 3.31 16 17 N -0.58 -14.38 2.60 -175.09 -0.46 -14.84 16 18 C -0.28 -7.70 9.61 -15.06 -0.14 -7.85 16 19 H 0.06 1.78 7.90 -52.49 -0.41 1.36 16 20 C 0.01 0.35 4.86 -17.43 -0.08 0.26 16 21 N -0.86 -24.63 7.84 55.49 0.43 -24.20 16 22 Si 0.89 22.49 29.60 -169.99 -5.03 17.45 16 23 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 24 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 25 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 26 C 0.16 3.73 4.67 -5.21 -0.02 3.71 16 27 C -0.10 -1.47 9.70 -39.58 -0.38 -1.85 16 28 C -0.12 -1.59 9.70 -39.59 -0.38 -1.97 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 33 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 34 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 35 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.09 1.04 8.09 -51.93 -0.42 0.62 16 37 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16 38 H 0.38 5.03 8.61 -40.82 -0.35 4.68 16 39 H 0.06 1.02 6.29 -51.93 -0.33 0.70 16 40 H 0.05 0.81 8.04 -51.93 -0.42 0.39 16 41 H 0.07 1.72 6.82 -51.93 -0.35 1.36 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 45 H 0.03 0.66 7.99 -51.93 -0.41 0.24 16 46 H 0.02 0.48 6.89 -51.93 -0.36 0.13 16 47 H 0.26 7.82 8.08 -40.82 -0.33 7.49 16 48 H 0.09 2.56 6.06 -51.93 -0.31 2.24 16 49 H 0.00 0.04 8.12 -51.93 -0.42 -0.38 16 50 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 51 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 393.92 15.07 5.94 5.94 Total: -1.00 -31.68 393.92 -11.42 -43.10 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -8.64 Total: 7.37 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -3.46 Total: -10.72 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: -0.30 Total: -51.93 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.08 Total: -11.21 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.03 Total: 17.45 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.68 -11.42 -43.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034421701.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.979 kcal (2) G-P(sol) polarization free energy of solvation -31.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds