Wall clock time and date at job start Tue Mar 31 2020 16:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47593 * 2 1 4 4 C 1.38241 * 119.99933 * 269.73053 * 3 2 1 5 5 C 1.38234 * 119.99625 * 179.76461 * 4 3 2 6 6 C 1.38237 * 120.00203 * 0.50249 * 5 4 3 7 7 C 1.50695 * 119.99827 * 179.72822 * 6 5 4 8 8 C 1.50706 * 109.46997 * 270.02257 * 7 6 5 9 9 O 1.21282 * 119.99555 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00041 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99765 * 180.02562 * 10 8 7 12 12 H 1.09003 * 108.45866 * 327.28254 * 11 10 8 13 13 C 1.52529 * 108.51930 * 209.71646 * 11 10 8 14 14 C 1.50127 * 105.41960 * 149.35034 * 13 11 10 15 15 C 1.54846 * 110.81208 * 97.67881 * 14 13 11 16 16 C 1.54899 * 110.14308 * 321.13826 * 15 14 13 17 17 N 1.43432 * 116.08126 * 318.63764 * 16 15 14 18 18 C 1.36942 * 120.53451 * 271.59708 * 17 16 15 19 19 H 1.07990 * 120.00291 * 336.45362 * 18 17 16 20 20 C 1.38815 * 119.99831 * 156.46518 * 18 17 16 21 21 N 1.31619 * 119.99862 * 338.77211 * 20 18 17 22 22 Si 1.86800 * 120.00281 * 158.78003 * 20 18 17 23 23 H 1.48503 * 109.47272 * 89.99199 * 22 20 18 24 24 H 1.48499 * 109.47177 * 209.99423 * 22 20 18 25 25 H 1.48503 * 109.46690 * 329.99685 * 22 20 18 26 26 C 1.46234 * 108.52554 * 84.99793 * 11 10 8 27 27 C 1.38234 * 119.99978 * 359.75099 * 6 5 4 28 28 C 1.38230 * 120.00301 * 89.99621 * 3 2 1 29 29 H 1.09004 * 109.46979 * 59.99857 * 1 2 3 30 30 H 1.08993 * 109.47606 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47177 * 300.00392 * 1 2 3 32 32 H 1.09001 * 109.46960 * 240.00012 * 2 1 3 33 33 H 1.08994 * 109.47045 * 120.00258 * 2 1 3 34 34 H 1.08003 * 119.99976 * 359.97438 * 4 3 2 35 35 H 1.08002 * 119.99568 * 180.22784 * 5 4 3 36 36 H 1.09004 * 109.47725 * 30.01919 * 7 6 5 37 37 H 1.09001 * 109.47246 * 150.02379 * 7 6 5 38 38 H 0.97002 * 119.99857 * 359.97438 * 10 8 7 39 39 H 1.09003 * 110.24937 * 268.32693 * 13 11 10 40 40 H 1.09001 * 110.25015 * 30.38057 * 13 11 10 41 41 H 1.08997 * 109.20641 * 337.34491 * 14 13 11 42 42 H 1.08992 * 109.17829 * 218.00321 * 14 13 11 43 43 H 1.09001 * 109.36212 * 200.92685 * 15 14 13 44 44 H 1.09009 * 109.24443 * 81.26896 * 15 14 13 45 45 H 1.09001 * 108.16045 * 196.91935 * 16 15 14 46 46 H 1.09001 * 108.16178 * 80.34989 * 16 15 14 47 47 H 0.97001 * 120.00088 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.84265 * 299.14708 * 26 11 10 49 49 H 1.08990 * 109.84811 * 60.13798 * 26 11 10 50 50 H 1.07992 * 120.00232 * 179.97438 * 27 6 5 51 51 H 1.08001 * 119.99755 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0705 -1.1972 5 6 2.7244 3.3754 -1.1972 6 6 2.9548 4.0271 0.0000 7 6 3.4581 5.4475 0.0000 8 6 4.9651 5.4465 -0.0001 9 8 5.5708 4.3957 -0.0006 10 7 5.6398 6.6133 0.0004 11 6 7.1048 6.6122 -0.0003 12 1 7.4495 5.7417 0.5579 13 6 7.5904 7.8675 0.7173 14 6 8.8978 7.4858 1.3488 15 6 10.0875 7.9348 0.4653 16 6 9.7505 7.7219 -1.0316 17 7 9.0702 6.5019 -1.3574 18 6 9.7784 5.3647 -1.6410 19 1 10.7967 5.4364 -1.9931 20 6 9.1871 4.1196 -1.4761 21 7 8.1466 3.9853 -0.6813 22 14 9.8682 2.6347 -2.3819 23 1 10.9047 1.9774 -1.5459 24 1 8.7692 1.6739 -2.6541 25 1 10.4724 3.0726 -3.6659 26 6 7.5687 6.4919 -1.3818 27 6 2.7241 3.3755 1.1972 28 6 2.2628 2.0724 1.1971 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0927 1.5598 -2.1325 35 1 2.9051 3.8842 -2.1325 36 1 3.0951 5.9616 -0.8900 37 1 3.0951 5.9616 0.8900 38 1 5.1553 7.4536 0.0004 39 1 7.7388 8.6771 0.0026 40 1 6.8743 8.1652 1.4832 41 1 8.9329 6.4036 1.4744 42 1 8.9764 7.9628 2.3256 43 1 10.9704 7.3502 0.7236 44 1 10.2888 8.9912 0.6435 45 1 10.6818 7.7530 -1.5972 46 1 9.1306 8.5552 -1.3622 47 1 7.7336 3.1153 -0.5658 48 1 7.2119 5.5559 -1.8118 49 1 7.2026 7.3335 -1.9698 50 1 2.9045 3.8844 2.1324 51 1 2.0831 1.5632 2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034421701.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:39 Heat of formation + Delta-G solvation = -8.179407 kcal Electronic energy + Delta-G solvation = -29247.528179 eV Core-core repulsion = 25532.434816 eV Total energy + Delta-G solvation = -3715.093363 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.01861 -40.16991 -38.86861 -35.73281 -35.37549 -34.76917 -32.67586 -32.33435 -31.77631 -31.01162 -28.16785 -27.71141 -25.79435 -24.78712 -23.91130 -23.61322 -21.95662 -21.39588 -21.02347 -20.28809 -18.53519 -17.72908 -17.28622 -16.77830 -16.67655 -16.63182 -16.04066 -15.90223 -15.54449 -15.35376 -14.88637 -14.72931 -14.60141 -14.49235 -14.15512 -13.97577 -13.90062 -13.66427 -13.43787 -13.22141 -13.02142 -12.89401 -12.75085 -12.61553 -12.50669 -12.43129 -12.04960 -12.03656 -11.86042 -11.68340 -11.64925 -11.58855 -11.24931 -11.16192 -11.07539 -10.44384 -10.30216 -9.76072 -9.65931 -9.33785 -8.52917 -7.66834 -5.11286 0.45716 0.56363 1.41563 1.45785 1.53094 2.15401 2.51917 2.60508 3.00377 3.40606 3.79438 3.80006 3.91269 3.98319 4.06616 4.16772 4.22931 4.24312 4.31381 4.41624 4.51135 4.52447 4.61113 4.65263 4.65956 4.71904 4.76130 4.77297 4.80764 4.88391 4.96137 5.05484 5.07126 5.07664 5.21569 5.25340 5.30832 5.37874 5.39985 5.46180 5.49506 5.55158 5.67117 5.71612 5.74500 5.75107 5.80232 6.04664 6.07488 6.18535 6.49133 7.04700 7.26937 7.87611 8.00302 8.49544 9.30146 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013400 B = 0.003547 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.082015 B = 7892.141565 C = 9374.101404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.084 4.084 3 C -0.095 4.095 4 C -0.132 4.132 5 C -0.120 4.120 6 C -0.076 4.076 7 C -0.091 4.091 8 C 0.485 3.515 9 O -0.537 6.537 10 N -0.725 5.725 11 C 0.140 3.860 12 H 0.079 0.921 13 C -0.109 4.109 14 C -0.101 4.101 15 C -0.137 4.137 16 C 0.150 3.850 17 N -0.597 5.597 18 C -0.284 4.284 19 H 0.057 0.943 20 C -0.033 4.033 21 N -0.861 5.861 22 Si 0.935 3.065 23 H -0.290 1.290 24 H -0.305 1.305 25 H -0.276 1.276 26 C 0.168 3.832 27 C -0.116 4.116 28 C -0.129 4.129 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.129 0.871 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.124 0.876 38 H 0.404 0.596 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.024 0.976 42 H 0.064 0.936 43 H 0.032 0.968 44 H 0.081 0.919 45 H 0.025 0.975 46 H 0.049 0.951 47 H 0.244 0.756 48 H 0.047 0.953 49 H 0.020 0.980 50 H 0.128 0.872 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.334 4.564 4.100 17.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.122 4.122 3 C -0.095 4.095 4 C -0.150 4.150 5 C -0.138 4.138 6 C -0.077 4.077 7 C -0.131 4.131 8 C 0.270 3.730 9 O -0.411 6.411 10 N -0.380 5.380 11 C 0.035 3.965 12 H 0.097 0.903 13 C -0.147 4.147 14 C -0.139 4.139 15 C -0.178 4.178 16 C 0.023 3.977 17 N -0.319 5.319 18 C -0.414 4.414 19 H 0.075 0.925 20 C -0.233 4.233 21 N -0.502 5.502 22 Si 0.765 3.235 23 H -0.217 1.217 24 H -0.232 1.232 25 H -0.201 1.201 26 C 0.043 3.957 27 C -0.134 4.134 28 C -0.147 4.147 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.147 0.853 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.142 0.858 38 H 0.239 0.761 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.043 0.957 42 H 0.083 0.917 43 H 0.051 0.949 44 H 0.099 0.901 45 H 0.043 0.957 46 H 0.067 0.933 47 H 0.054 0.946 48 H 0.066 0.934 49 H 0.038 0.962 50 H 0.146 0.854 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.977 3.635 4.116 16.894 hybrid contribution 0.641 -0.925 -0.533 1.245 sum -15.336 2.710 3.583 15.981 Atomic orbital electron populations 1.21698 0.93467 1.02444 1.02049 1.20574 0.97149 0.91344 1.03103 1.20156 0.99195 0.97192 0.93005 1.21184 1.00652 0.94817 0.98338 1.21155 0.99249 0.95575 0.97810 1.19519 0.98565 0.96042 0.93536 1.20703 0.90748 0.94885 1.06769 1.21167 0.90496 0.84344 0.76997 1.90919 1.70565 1.32151 1.47499 1.46241 1.07402 1.08237 1.76072 1.20600 0.78292 0.99161 0.98473 0.90298 1.21278 0.97011 0.96700 0.99725 1.21215 0.95111 0.99360 0.98234 1.22823 0.96917 1.00120 0.97906 1.20565 0.95504 0.88261 0.93418 1.44163 1.01246 1.07317 1.79222 1.19099 0.97988 0.84937 1.39422 0.92545 1.25536 0.99437 0.98986 0.99344 1.70076 1.23104 1.22729 1.34320 0.85804 0.76793 0.81397 0.79532 1.21679 1.23189 1.20084 1.20258 0.82625 0.97843 0.94990 1.21176 0.99012 0.95482 0.97733 1.21206 1.00384 0.94832 0.98244 0.92836 0.91026 0.92543 0.91049 0.90635 0.85300 0.86281 0.86498 0.85814 0.76074 0.90485 0.89983 0.95706 0.91747 0.94919 0.90061 0.95707 0.93258 0.94617 0.93445 0.96182 0.85419 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.90 71.98 0.71 -1.50 16 2 C -0.08 -1.69 6.07 29.85 0.18 -1.51 16 3 C -0.10 -2.50 5.13 -19.87 -0.10 -2.60 16 4 C -0.13 -3.71 9.70 22.27 0.22 -3.49 16 5 C -0.12 -3.62 9.70 22.27 0.22 -3.40 16 6 C -0.08 -2.26 4.37 -19.87 -0.09 -2.34 16 7 C -0.09 -2.31 5.83 29.10 0.17 -2.14 16 8 C 0.48 17.72 7.74 87.66 0.68 18.40 16 9 O -0.54 -26.49 13.62 -3.04 -0.04 -26.53 16 10 N -0.73 -23.86 4.87 -453.30 -2.21 -26.07 16 11 C 0.14 5.73 1.84 42.75 0.08 5.81 16 12 H 0.08 4.19 4.55 -2.39 -0.01 4.18 16 13 C -0.11 -3.54 5.25 29.51 0.15 -3.38 16 14 C -0.10 -3.67 5.65 30.30 0.17 -3.50 16 15 C -0.14 -4.89 6.41 31.87 0.20 -4.69 16 16 C 0.15 6.11 5.17 87.60 0.45 6.57 16 17 N -0.60 -29.75 2.60 -707.86 -1.84 -31.59 16 18 C -0.28 -16.10 9.61 84.03 0.81 -15.29 16 19 H 0.06 3.21 7.90 -2.92 -0.02 3.19 16 20 C -0.03 -1.91 4.86 84.86 0.41 -1.49 16 21 N -0.86 -52.01 7.84 21.65 0.17 -51.84 16 22 Si 0.93 47.97 29.60 68.60 2.03 50.00 16 23 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 24 H -0.30 -16.17 7.11 99.48 0.71 -15.46 16 25 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 26 C 0.17 7.89 4.67 83.58 0.39 8.28 16 27 C -0.12 -3.29 9.70 22.27 0.22 -3.08 16 28 C -0.13 -3.42 9.70 22.27 0.22 -3.20 16 29 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 1.40 8.08 -2.39 -0.02 1.38 16 33 H 0.08 1.41 8.09 -2.39 -0.02 1.39 16 34 H 0.13 3.13 8.06 -2.91 -0.02 3.11 16 35 H 0.12 3.40 8.06 -2.91 -0.02 3.37 16 36 H 0.12 2.36 8.09 -2.38 -0.02 2.34 16 37 H 0.12 2.31 8.09 -2.39 -0.02 2.29 16 38 H 0.40 9.42 8.61 -92.71 -0.80 8.62 16 39 H 0.08 2.27 6.29 -2.39 -0.01 2.26 16 40 H 0.08 2.19 8.04 -2.39 -0.02 2.17 16 41 H 0.02 1.14 6.82 -2.39 -0.02 1.13 16 42 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.03 1.26 8.14 -2.39 -0.02 1.25 16 44 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 45 H 0.02 1.02 7.99 -2.39 -0.02 1.00 16 46 H 0.05 1.76 6.89 -2.39 -0.02 1.74 16 47 H 0.24 15.43 8.08 -92.71 -0.75 14.68 16 48 H 0.05 2.68 6.06 -2.39 -0.01 2.67 16 49 H 0.02 0.86 8.12 -2.39 -0.02 0.84 16 50 H 0.13 3.20 8.06 -2.91 -0.02 3.17 16 51 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -73.86 393.92 3.33 -70.53 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: 0.13 Total: 28.09 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 5.09 Total: -12.59 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -3.88 Total: -109.51 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.04 Total: -26.53 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Total: -73.86 3.33 -70.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034421701.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.347 kcal (2) G-P(sol) polarization free energy of solvation -73.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds