Wall clock time and date at job start Tue Mar 31 2020 16:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 109.47049 * 2 1 4 4 C 1.38256 * 119.99730 * 264.99762 * 3 2 1 5 5 C 1.38214 * 120.00164 * 179.97438 * 4 3 2 6 6 C 1.38260 * 119.99662 * 359.97438 * 5 4 3 7 7 C 1.38212 * 120.00038 * 0.02562 * 6 5 4 8 8 C 1.38211 * 120.00152 * 84.72434 * 3 2 1 9 9 C 1.50698 * 119.99834 * 359.97438 * 8 3 2 10 10 C 1.50698 * 109.47251 * 85.00549 * 9 8 3 11 11 O 1.21287 * 120.00089 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00308 * 180.02562 * 10 9 8 13 13 C 1.46490 * 120.00068 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.47346 * 34.99949 * 13 12 10 15 15 C 1.52999 * 109.47128 * 154.99901 * 13 12 10 16 16 C 1.52998 * 109.47455 * 180.02562 * 15 13 12 17 17 C 1.53008 * 109.46992 * 299.99880 * 16 15 13 18 18 H 1.09000 * 109.47097 * 300.00120 * 17 16 15 19 19 N 1.46502 * 109.47018 * 179.97438 * 17 16 15 20 20 C 1.36937 * 119.99728 * 155.00383 * 19 17 16 21 21 H 1.08003 * 120.00159 * 359.97438 * 20 19 17 22 22 C 1.38813 * 119.99911 * 179.97438 * 20 19 17 23 23 N 1.31621 * 119.99874 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99944 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47222 * 90.00277 * 24 22 20 26 26 H 1.48502 * 109.47348 * 210.00200 * 24 22 20 27 27 H 1.48506 * 109.47304 * 330.00084 * 24 22 20 28 28 C 1.52999 * 109.46922 * 59.99793 * 17 16 15 29 29 C 1.53000 * 109.47284 * 274.99961 * 13 12 10 30 30 H 1.09002 * 109.47097 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47360 * 299.99872 * 1 2 3 32 32 H 1.08997 * 109.47379 * 60.00219 * 1 2 3 33 33 H 1.08998 * 109.47472 * 239.99873 * 2 1 3 34 34 H 1.09005 * 109.47189 * 119.99482 * 2 1 3 35 35 H 1.07999 * 120.00073 * 0.02562 * 4 3 2 36 36 H 1.07992 * 119.99988 * 180.02562 * 5 4 3 37 37 H 1.08001 * 119.99576 * 180.02562 * 6 5 4 38 38 H 1.07999 * 119.99937 * 180.02562 * 7 6 5 39 39 H 1.09004 * 109.46683 * 204.99819 * 9 8 3 40 40 H 1.09000 * 109.47263 * 324.99722 * 9 8 3 41 41 H 0.96999 * 119.99704 * 359.97438 * 12 10 9 42 42 H 1.09001 * 109.46996 * 299.99839 * 15 13 12 43 43 H 1.09003 * 109.47467 * 59.99739 * 15 13 12 44 44 H 1.09003 * 109.47110 * 59.99381 * 16 15 13 45 45 H 1.08999 * 109.47633 * 179.97438 * 16 15 13 46 46 H 0.96997 * 120.00010 * 334.99542 * 19 17 16 47 47 H 0.97003 * 120.00002 * 180.02562 * 23 22 20 48 48 H 1.09000 * 109.46968 * 60.00247 * 28 17 16 49 49 H 1.09001 * 109.46996 * 180.02562 * 28 17 16 50 50 H 1.09010 * 109.46943 * 299.99701 * 29 13 12 51 51 H 1.08997 * 109.47739 * 60.00061 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3611 2.0378 -1.1928 5 6 2.8213 3.3411 -1.1930 6 6 2.9523 4.0280 -0.0003 7 6 2.6236 3.4113 1.1922 8 6 2.1589 2.1091 1.1919 9 6 1.7940 1.4389 2.4914 10 6 2.9706 0.6423 2.9934 11 8 4.0037 0.6205 2.3583 12 7 2.8747 -0.0468 4.1478 13 6 4.0183 -0.8216 4.6355 14 1 4.9430 -0.3026 4.3830 15 6 3.9188 -0.9766 6.1543 16 6 5.1135 -1.7852 6.6639 17 6 5.1101 -3.1680 6.0088 18 1 4.1856 -3.6873 6.2612 19 7 6.2544 -3.9421 6.4962 20 6 6.2097 -5.3107 6.4854 21 1 5.3308 -5.8194 6.1178 22 6 7.2942 -6.0442 6.9467 23 7 8.3651 -5.4242 7.3951 24 14 7.2329 -7.9111 6.9325 25 1 7.7603 -8.4139 5.6385 26 1 8.0616 -8.4421 8.0445 27 1 5.8282 -8.3617 7.1032 28 6 5.2096 -3.0130 4.4899 29 6 4.0143 -2.2042 3.9804 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.2576 1.5016 -2.1246 36 1 3.0778 3.8230 -2.1247 37 1 3.3115 5.0465 -0.0004 38 1 2.7255 3.9480 2.1238 39 1 1.5271 2.1964 3.2284 40 1 0.9461 0.7730 2.3312 41 1 2.0485 -0.0297 4.6556 42 1 3.9218 0.0085 6.6210 43 1 2.9941 -1.4955 6.4069 44 1 6.0380 -1.2659 6.4113 45 1 5.0429 -1.8953 7.7460 46 1 7.0437 -3.4852 6.8266 47 1 9.1231 -5.9368 7.7171 48 1 6.1341 -2.4937 4.2375 49 1 5.2066 -3.9980 4.0233 50 1 3.0895 -2.7232 4.2329 51 1 4.0852 -2.0939 2.8983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034672310.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:44 Heat of formation + Delta-G solvation = -31.132553 kcal Electronic energy + Delta-G solvation = -28084.289459 eV Core-core repulsion = 24368.200773 eV Total energy + Delta-G solvation = -3716.088686 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.50752 -39.31895 -37.82974 -34.83495 -34.52970 -33.12841 -32.65728 -30.66068 -30.38525 -29.72937 -28.26825 -26.78298 -24.11337 -23.61130 -22.47338 -22.25103 -21.29010 -20.69027 -20.25907 -19.40148 -17.32241 -16.85593 -16.72475 -16.33648 -16.09147 -15.26162 -15.05389 -14.75790 -14.27667 -14.02961 -13.90016 -13.74365 -13.64603 -13.54753 -13.31875 -13.19621 -13.03748 -12.53921 -12.35223 -12.19962 -12.01676 -11.96994 -11.79391 -11.54159 -11.40193 -11.06589 -10.97991 -10.90571 -10.80873 -10.74580 -10.65067 -10.17027 -10.09131 -9.89004 -9.73937 -9.56739 -8.96875 -8.94048 -8.82902 -8.75380 -6.92216 -5.73826 -3.02214 1.15200 1.23722 2.61181 3.11896 3.44940 3.49894 3.51519 3.64760 4.37783 4.52027 4.60813 4.67013 4.73234 4.77936 4.92386 4.96779 4.98639 5.07039 5.10296 5.13884 5.27245 5.30471 5.34914 5.41474 5.53850 5.63157 5.64788 5.67884 5.70221 5.75282 5.80238 5.86969 5.89458 5.91255 6.00174 6.05034 6.25671 6.29189 6.29750 6.32625 6.33271 6.47034 6.50235 6.59094 6.68292 6.74626 6.83531 7.00961 7.17225 7.48530 7.72442 8.22358 8.45102 9.55920 10.14829 10.49313 11.48981 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020804 B = 0.002168 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.559840 B =12911.123522 C =13296.259318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.062 4.062 4 C -0.119 4.119 5 C -0.118 4.118 6 C -0.126 4.126 7 C -0.105 4.105 8 C -0.062 4.062 9 C -0.108 4.108 10 C 0.512 3.488 11 O -0.527 6.527 12 N -0.728 5.728 13 C 0.145 3.855 14 H 0.086 0.914 15 C -0.118 4.118 16 C -0.121 4.121 17 C 0.178 3.822 18 H 0.046 0.954 19 N -0.726 5.726 20 C -0.236 4.236 21 H 0.070 0.930 22 C -0.015 4.015 23 N -0.933 5.933 24 Si 0.905 3.095 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C -0.132 4.132 29 C -0.123 4.123 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.397 0.603 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.383 0.617 47 H 0.254 0.746 48 H 0.056 0.944 49 H 0.063 0.937 50 H 0.057 0.943 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.864 19.242 -12.798 29.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.062 4.062 4 C -0.137 4.137 5 C -0.136 4.136 6 C -0.144 4.144 7 C -0.123 4.123 8 C -0.063 4.063 9 C -0.148 4.148 10 C 0.297 3.703 11 O -0.402 6.402 12 N -0.379 5.379 13 C 0.042 3.958 14 H 0.104 0.896 15 C -0.157 4.157 16 C -0.160 4.160 17 C 0.068 3.932 18 H 0.064 0.936 19 N -0.366 5.366 20 C -0.367 4.367 21 H 0.087 0.913 22 C -0.211 4.211 23 N -0.582 5.582 24 Si 0.737 3.263 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.173 4.173 29 C -0.162 4.162 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.230 0.770 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.075 0.925 49 H 0.081 0.919 50 H 0.076 0.924 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.137 19.027 -13.241 29.433 hybrid contribution 0.018 -0.878 0.291 0.925 sum -18.119 18.148 -12.950 28.729 Atomic orbital electron populations 1.21773 0.94691 1.01887 1.02056 1.20579 0.95916 0.92856 1.03347 1.19673 0.98259 0.95672 0.92635 1.20986 1.00126 0.95196 0.97371 1.21104 0.99692 0.94818 0.98034 1.21058 1.00781 0.99955 0.92562 1.20960 0.98689 0.94500 0.98144 1.19095 1.00089 0.93999 0.93082 1.20770 0.97824 1.00158 0.96010 1.20460 0.89411 0.79502 0.80899 1.90755 1.30649 1.62694 1.56142 1.46188 1.17137 1.50366 1.24221 1.21091 0.89163 0.91941 0.93627 0.89569 1.21744 1.00029 1.00290 0.93610 1.21754 0.96994 0.96645 1.00560 1.20234 0.92088 0.90100 0.90803 0.93638 1.42435 1.15717 1.03150 1.75297 1.19239 1.00023 0.82662 1.34808 0.91251 1.24742 0.96531 0.97832 1.02019 1.69664 1.05787 1.34144 1.48611 0.86211 0.77130 0.85837 0.77148 1.21773 1.21822 1.20815 1.22232 0.96303 0.99295 0.99477 1.21896 0.99764 0.94711 0.99828 0.92195 0.92581 0.92491 0.90911 0.90915 0.86223 0.86261 0.86218 0.86296 0.88202 0.87849 0.76983 0.91953 0.91600 0.92007 0.91392 0.78313 0.93563 0.92534 0.91867 0.92380 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.72 37.16 0.36 -0.65 16 2 C -0.09 -0.82 5.38 -27.88 -0.15 -0.97 16 3 C -0.06 -0.64 5.13 -104.62 -0.54 -1.18 16 4 C -0.12 -1.16 9.68 -39.58 -0.38 -1.54 16 5 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 6 C -0.13 -1.16 10.05 -39.58 -0.40 -1.56 16 7 C -0.10 -1.04 9.68 -39.58 -0.38 -1.42 16 8 C -0.06 -0.64 4.37 -104.63 -0.46 -1.10 16 9 C -0.11 -0.90 5.16 -29.04 -0.15 -1.05 16 10 C 0.51 6.04 6.99 -10.98 -0.08 5.97 16 11 O -0.53 -8.71 15.70 5.55 0.09 -8.62 16 12 N -0.73 -7.51 5.08 -53.81 -0.27 -7.78 16 13 C 0.15 1.91 2.45 -67.94 -0.17 1.74 16 14 H 0.09 1.35 7.58 -51.93 -0.39 0.95 16 15 C -0.12 -1.44 5.39 -26.73 -0.14 -1.59 16 16 C -0.12 -1.93 5.39 -26.73 -0.14 -2.08 16 17 C 0.18 3.48 2.77 -67.93 -0.19 3.29 16 18 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 19 N -0.73 -18.24 5.12 -53.42 -0.27 -18.51 16 20 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 21 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 22 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 23 N -0.93 -28.46 13.06 55.49 0.72 -27.73 16 24 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 28 C -0.13 -2.43 5.50 -26.71 -0.15 -2.58 16 29 C -0.12 -1.82 5.50 -26.71 -0.15 -1.97 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.35 6.77 -51.93 -0.35 0.00 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 34 H 0.07 0.75 6.43 -51.93 -0.33 0.42 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 37 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.10 0.60 8.05 -51.93 -0.42 0.18 16 40 H 0.10 0.68 5.60 -51.93 -0.29 0.39 16 41 H 0.40 2.81 8.60 -40.82 -0.35 2.46 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.38 10.27 7.80 -40.82 -0.32 9.96 16 47 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 48 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 50 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 51 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 405.23 15.07 6.11 6.11 Total: -1.00 -33.68 405.23 -11.17 -44.85 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -8.76 Total: 9.58 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -3.75 Total: -15.43 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 0.18 Total: -54.03 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.09 Total: -8.62 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.68 -11.17 -44.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034672310.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.714 kcal (2) G-P(sol) polarization free energy of solvation -33.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds