Wall clock time and date at job start Tue Mar 31 2020 16:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 109.47049 * 2 1 4 4 C 1.38256 * 119.99730 * 264.99762 * 3 2 1 5 5 C 1.38214 * 120.00164 * 179.97438 * 4 3 2 6 6 C 1.38260 * 119.99662 * 359.97438 * 5 4 3 7 7 C 1.38212 * 120.00038 * 0.02562 * 6 5 4 8 8 C 1.38211 * 120.00152 * 84.72434 * 3 2 1 9 9 C 1.50698 * 119.99834 * 359.97438 * 8 3 2 10 10 C 1.50698 * 109.47251 * 85.00549 * 9 8 3 11 11 O 1.21287 * 120.00089 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00308 * 180.02562 * 10 9 8 13 13 C 1.46490 * 120.00068 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.47346 * 34.99949 * 13 12 10 15 15 C 1.52999 * 109.47128 * 154.99901 * 13 12 10 16 16 C 1.52998 * 109.47455 * 180.02562 * 15 13 12 17 17 C 1.53008 * 109.46992 * 299.99880 * 16 15 13 18 18 H 1.09000 * 109.47097 * 300.00120 * 17 16 15 19 19 N 1.46502 * 109.47018 * 179.97438 * 17 16 15 20 20 C 1.36937 * 119.99728 * 155.00383 * 19 17 16 21 21 H 1.08003 * 120.00159 * 359.97438 * 20 19 17 22 22 C 1.38813 * 119.99911 * 179.97438 * 20 19 17 23 23 N 1.31621 * 119.99874 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99944 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47222 * 90.00277 * 24 22 20 26 26 H 1.48502 * 109.47348 * 210.00200 * 24 22 20 27 27 H 1.48506 * 109.47304 * 330.00084 * 24 22 20 28 28 C 1.52999 * 109.46922 * 59.99793 * 17 16 15 29 29 C 1.53000 * 109.47284 * 274.99961 * 13 12 10 30 30 H 1.09002 * 109.47097 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47360 * 299.99872 * 1 2 3 32 32 H 1.08997 * 109.47379 * 60.00219 * 1 2 3 33 33 H 1.08998 * 109.47472 * 239.99873 * 2 1 3 34 34 H 1.09005 * 109.47189 * 119.99482 * 2 1 3 35 35 H 1.07999 * 120.00073 * 0.02562 * 4 3 2 36 36 H 1.07992 * 119.99988 * 180.02562 * 5 4 3 37 37 H 1.08001 * 119.99576 * 180.02562 * 6 5 4 38 38 H 1.07999 * 119.99937 * 180.02562 * 7 6 5 39 39 H 1.09004 * 109.46683 * 204.99819 * 9 8 3 40 40 H 1.09000 * 109.47263 * 324.99722 * 9 8 3 41 41 H 0.96999 * 119.99704 * 359.97438 * 12 10 9 42 42 H 1.09001 * 109.46996 * 299.99839 * 15 13 12 43 43 H 1.09003 * 109.47467 * 59.99739 * 15 13 12 44 44 H 1.09003 * 109.47110 * 59.99381 * 16 15 13 45 45 H 1.08999 * 109.47633 * 179.97438 * 16 15 13 46 46 H 0.96997 * 120.00010 * 334.99542 * 19 17 16 47 47 H 0.97003 * 120.00002 * 180.02562 * 23 22 20 48 48 H 1.09000 * 109.46968 * 60.00247 * 28 17 16 49 49 H 1.09001 * 109.46996 * 180.02562 * 28 17 16 50 50 H 1.09010 * 109.46943 * 299.99701 * 29 13 12 51 51 H 1.08997 * 109.47739 * 60.00061 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3611 2.0378 -1.1928 5 6 2.8213 3.3411 -1.1930 6 6 2.9523 4.0280 -0.0003 7 6 2.6236 3.4113 1.1922 8 6 2.1589 2.1091 1.1919 9 6 1.7940 1.4389 2.4914 10 6 2.9706 0.6423 2.9934 11 8 4.0037 0.6205 2.3583 12 7 2.8747 -0.0468 4.1478 13 6 4.0183 -0.8216 4.6355 14 1 4.9430 -0.3026 4.3830 15 6 3.9188 -0.9766 6.1543 16 6 5.1135 -1.7852 6.6639 17 6 5.1101 -3.1680 6.0088 18 1 4.1856 -3.6873 6.2612 19 7 6.2544 -3.9421 6.4962 20 6 6.2097 -5.3107 6.4854 21 1 5.3308 -5.8194 6.1178 22 6 7.2942 -6.0442 6.9467 23 7 8.3651 -5.4242 7.3951 24 14 7.2329 -7.9111 6.9325 25 1 7.7603 -8.4139 5.6385 26 1 8.0616 -8.4421 8.0445 27 1 5.8282 -8.3617 7.1032 28 6 5.2096 -3.0130 4.4899 29 6 4.0143 -2.2042 3.9804 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.2576 1.5016 -2.1246 36 1 3.0778 3.8230 -2.1247 37 1 3.3115 5.0465 -0.0004 38 1 2.7255 3.9480 2.1238 39 1 1.5271 2.1964 3.2284 40 1 0.9461 0.7730 2.3312 41 1 2.0485 -0.0297 4.6556 42 1 3.9218 0.0085 6.6210 43 1 2.9941 -1.4955 6.4069 44 1 6.0380 -1.2659 6.4113 45 1 5.0429 -1.8953 7.7460 46 1 7.0437 -3.4852 6.8266 47 1 9.1231 -5.9368 7.7171 48 1 6.1341 -2.4937 4.2375 49 1 5.2066 -3.9980 4.0233 50 1 3.0895 -2.7232 4.2329 51 1 4.0852 -2.0939 2.8983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034672310.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:43 Heat of formation + Delta-G solvation = -50.971591 kcal Electronic energy + Delta-G solvation = -28085.149744 eV Core-core repulsion = 24368.200773 eV Total energy + Delta-G solvation = -3716.948971 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.37150 -40.23160 -39.06814 -36.34239 -35.19832 -34.61828 -33.52250 -32.36903 -31.68410 -30.39626 -29.43489 -27.94988 -25.54839 -24.70972 -23.67211 -23.21641 -22.39695 -21.63173 -21.21574 -20.71221 -19.12633 -18.00515 -17.55326 -17.10838 -17.01252 -16.75527 -15.98968 -15.84379 -15.62682 -15.36550 -15.11813 -14.92371 -14.63693 -14.61710 -14.33401 -14.10123 -13.92243 -13.81657 -13.44921 -13.15788 -13.08999 -13.00778 -12.85362 -12.77373 -12.64664 -12.42851 -12.29965 -12.14740 -12.12149 -12.03207 -11.68937 -11.65878 -11.54327 -11.45380 -11.19848 -10.90290 -10.79733 -9.97778 -9.67149 -9.45621 -8.99671 -7.93572 -5.21759 0.44715 0.53348 1.46198 1.48203 1.56281 1.71536 2.24163 2.56544 2.92672 3.39209 3.68547 3.76547 3.82315 3.86799 3.91036 4.01148 4.11506 4.13247 4.29996 4.30971 4.37016 4.38344 4.41251 4.49915 4.55493 4.55958 4.60140 4.65623 4.67252 4.73705 4.77251 4.87649 5.00808 5.03864 5.08770 5.12620 5.14898 5.19361 5.25079 5.25626 5.28292 5.40451 5.48777 5.55105 5.58366 5.61118 5.64413 5.64756 5.76737 6.16713 6.29234 6.67048 7.34415 7.37636 8.12306 8.34501 9.30201 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020804 B = 0.002168 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.559840 B =12911.123522 C =13296.259318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 C -0.079 4.079 4 C -0.135 4.135 5 C -0.127 4.127 6 C -0.137 4.137 7 C -0.119 4.119 8 C -0.079 4.079 9 C -0.099 4.099 10 C 0.511 3.489 11 O -0.580 6.580 12 N -0.712 5.712 13 C 0.154 3.846 14 H 0.058 0.942 15 C -0.104 4.104 16 C -0.114 4.114 17 C 0.173 3.827 18 H 0.049 0.951 19 N -0.740 5.740 20 C -0.235 4.235 21 H 0.076 0.924 22 C -0.080 4.080 23 N -0.972 5.972 24 Si 0.971 3.029 25 H -0.291 1.291 26 H -0.296 1.296 27 H -0.267 1.267 28 C -0.123 4.123 29 C -0.110 4.110 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.130 0.870 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.124 0.876 41 H 0.418 0.582 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.049 0.951 45 H 0.067 0.933 46 H 0.371 0.629 47 H 0.250 0.750 48 H 0.035 0.965 49 H 0.039 0.961 50 H 0.077 0.923 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.858 20.145 -12.613 32.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 C -0.079 4.079 4 C -0.153 4.153 5 C -0.145 4.145 6 C -0.155 4.155 7 C -0.137 4.137 8 C -0.080 4.080 9 C -0.138 4.138 10 C 0.299 3.701 11 O -0.459 6.459 12 N -0.364 5.364 13 C 0.049 3.951 14 H 0.077 0.923 15 C -0.143 4.143 16 C -0.153 4.153 17 C 0.065 3.935 18 H 0.067 0.933 19 N -0.379 5.379 20 C -0.367 4.367 21 H 0.093 0.907 22 C -0.272 4.272 23 N -0.623 5.623 24 Si 0.800 3.200 25 H -0.218 1.218 26 H -0.222 1.222 27 H -0.192 1.192 28 C -0.164 4.164 29 C -0.150 4.150 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.148 0.852 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.255 0.745 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.068 0.932 45 H 0.086 0.914 46 H 0.202 0.798 47 H 0.058 0.942 48 H 0.054 0.946 49 H 0.058 0.942 50 H 0.096 0.904 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -21.225 19.949 -13.056 31.920 hybrid contribution 0.947 -1.102 0.157 1.462 sum -20.277 18.847 -12.899 30.541 Atomic orbital electron populations 1.21741 0.92884 1.02545 1.02665 1.20565 0.97454 0.92130 1.02389 1.19935 0.98636 0.96236 0.93119 1.21254 1.00417 0.95782 0.97870 1.21410 0.99304 0.94793 0.99000 1.21381 1.00599 1.00947 0.92540 1.21270 0.98631 0.94768 0.99034 1.19367 1.00426 0.94390 0.93810 1.20801 0.96528 1.00682 0.95819 1.21077 0.89578 0.79043 0.80406 1.90743 1.32960 1.64507 1.57678 1.45944 1.17116 1.49277 1.24043 1.20774 0.89362 0.90736 0.94275 0.92331 1.21643 0.98955 1.01217 0.92439 1.21647 0.98569 0.94788 1.00287 1.20489 0.90138 0.91555 0.91315 0.93286 1.42692 1.16862 1.02828 1.75534 1.19627 0.99856 0.84118 1.33102 0.90657 1.25566 0.96508 1.02334 1.02821 1.69825 1.06470 1.35577 1.50412 0.85170 0.77637 0.80541 0.76632 1.21803 1.22232 1.19168 1.22040 0.97253 0.98455 0.98654 1.21755 0.98619 0.95531 0.99048 0.91467 0.91594 0.92261 0.91403 0.92320 0.85209 0.84422 0.84408 0.84897 0.85139 0.85767 0.74474 0.89335 0.89205 0.93175 0.91415 0.79784 0.94152 0.94639 0.94226 0.90394 0.93688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.72 71.98 0.70 -0.99 16 2 C -0.09 -1.54 5.38 29.85 0.16 -1.38 16 3 C -0.08 -1.58 5.13 -19.86 -0.10 -1.68 16 4 C -0.14 -2.57 9.68 22.27 0.22 -2.35 16 5 C -0.13 -2.22 10.05 22.27 0.22 -2.00 16 6 C -0.14 -2.38 10.05 22.27 0.22 -2.16 16 7 C -0.12 -2.19 9.68 22.27 0.22 -1.97 16 8 C -0.08 -1.52 4.37 -19.87 -0.09 -1.61 16 9 C -0.10 -1.40 5.16 29.10 0.15 -1.25 16 10 C 0.51 11.18 6.99 87.66 0.61 11.79 16 11 O -0.58 -19.12 15.70 -3.05 -0.05 -19.17 16 12 N -0.71 -12.67 5.08 -442.55 -2.25 -14.91 16 13 C 0.15 3.77 2.45 44.99 0.11 3.88 16 14 H 0.06 1.82 7.58 -2.39 -0.02 1.80 16 15 C -0.10 -2.23 5.39 30.59 0.16 -2.06 16 16 C -0.11 -3.53 5.39 30.60 0.16 -3.37 16 17 C 0.17 6.74 2.77 44.99 0.12 6.86 16 18 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 19 N -0.74 -37.90 5.12 -322.92 -1.65 -39.55 16 20 C -0.24 -13.20 9.93 84.03 0.83 -12.37 16 21 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 22 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 23 N -0.97 -60.66 13.06 21.65 0.28 -60.38 16 24 Si 0.97 46.84 29.55 68.60 2.03 48.86 16 25 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 26 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 27 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 28 C -0.12 -4.61 5.50 30.61 0.17 -4.44 16 29 C -0.11 -3.17 5.50 30.61 0.17 -3.00 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.65 6.77 -2.38 -0.02 0.64 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 1.20 8.05 -2.39 -0.02 1.18 16 34 H 0.06 1.17 6.43 -2.38 -0.02 1.16 16 35 H 0.13 2.03 8.06 -2.91 -0.02 2.00 16 36 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 37 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 38 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 39 H 0.13 1.04 8.05 -2.39 -0.02 1.02 16 40 H 0.12 1.23 5.60 -2.39 -0.01 1.21 16 41 H 0.42 4.08 8.60 -92.71 -0.80 3.29 16 42 H 0.09 1.53 8.14 -2.39 -0.02 1.52 16 43 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.37 20.54 7.80 -92.71 -0.72 19.81 16 47 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 48 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 51 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -75.69 405.23 2.28 -73.42 By element: Atomic # 1 Polarization: 34.67 SS G_CDS: -0.60 Total: 34.06 kcal Atomic # 6 Polarization: -26.85 SS G_CDS: 4.52 Total: -22.34 kcal Atomic # 7 Polarization: -111.22 SS G_CDS: -3.62 Total: -114.84 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.05 Total: -19.17 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.86 kcal Total: -75.69 2.28 -73.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034672310.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.447 kcal (2) G-P(sol) polarization free energy of solvation -75.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds