Wall clock time and date at job start Tue Mar 31 2020 16:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47225 * 2 1 4 4 C 1.38256 * 120.00191 * 270.02413 * 3 2 1 5 5 C 1.38207 * 120.00018 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.00174 * 359.81472 * 5 4 3 7 7 C 1.38213 * 119.99653 * 0.41370 * 6 5 4 8 8 C 1.50695 * 119.99963 * 179.81225 * 7 6 5 9 9 C 1.50703 * 109.47099 * 269.72993 * 8 7 6 10 10 O 1.21279 * 120.00177 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00040 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00074 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.46813 * 35.00305 * 12 11 9 14 14 C 1.53000 * 109.46840 * 155.00031 * 12 11 9 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.47127 * 300.00449 * 15 14 12 17 17 H 1.09001 * 109.47002 * 299.99574 * 16 15 14 18 18 N 1.46504 * 109.46883 * 180.02562 * 16 15 14 19 19 C 1.36932 * 120.00287 * 85.00233 * 18 16 15 20 20 H 1.08003 * 120.00064 * 359.97438 * 19 18 16 21 21 C 1.38811 * 120.00254 * 179.97438 * 19 18 16 22 22 N 1.31621 * 119.99809 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00161 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47617 * 89.99792 * 23 21 19 25 25 H 1.48505 * 109.47116 * 209.99875 * 23 21 19 26 26 H 1.48504 * 109.46948 * 329.99386 * 23 21 19 27 27 C 1.52997 * 109.47164 * 59.99836 * 16 15 14 28 28 C 1.52996 * 109.47185 * 275.00149 * 12 11 9 29 29 C 1.38217 * 119.99824 * 90.00073 * 3 2 1 30 30 H 1.09002 * 109.46690 * 300.00008 * 1 2 3 31 31 H 1.09005 * 109.46770 * 59.99999 * 1 2 3 32 32 H 1.08999 * 109.46707 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47159 * 240.00570 * 2 1 3 34 34 H 1.08995 * 109.47290 * 120.00089 * 2 1 3 35 35 H 1.08004 * 119.99819 * 359.97438 * 4 3 2 36 36 H 1.08005 * 119.99771 * 180.02562 * 5 4 3 37 37 H 1.07999 * 119.99834 * 180.23136 * 6 5 4 38 38 H 1.09002 * 109.47342 * 149.72920 * 8 7 6 39 39 H 1.09003 * 109.47335 * 29.72777 * 8 7 6 40 40 H 0.97002 * 119.99499 * 0.02562 * 11 9 8 41 41 H 1.09002 * 109.47398 * 300.00326 * 14 12 11 42 42 H 1.09001 * 109.47194 * 60.00507 * 14 12 11 43 43 H 1.08998 * 109.47533 * 59.99948 * 15 14 12 44 44 H 1.08996 * 109.47853 * 180.02562 * 15 14 12 45 45 H 0.97003 * 119.99624 * 264.99510 * 18 16 15 46 46 H 0.97001 * 119.99763 * 180.02562 * 22 21 19 47 47 H 1.09002 * 109.47045 * 180.02562 * 27 16 15 48 48 H 1.09001 * 109.47375 * 59.99966 * 27 16 15 49 49 H 1.08992 * 109.47554 * 299.99819 * 28 12 11 50 50 H 1.09004 * 109.47108 * 60.00069 * 28 12 11 51 51 H 1.07998 * 120.00057 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2624 2.0728 -1.1973 5 6 2.7226 3.3760 -1.1973 6 6 2.9494 4.0290 0.0001 7 6 2.7240 3.3757 1.1970 8 6 2.9751 4.0860 2.5021 9 6 4.3983 3.8488 2.9374 10 8 5.1358 3.1694 2.2552 11 7 4.8515 4.3917 4.0848 12 6 6.2348 4.1606 4.5082 13 1 6.8806 4.1161 3.6311 14 6 6.6877 5.3047 5.4175 15 6 8.1325 5.0638 5.8592 16 6 8.2185 3.7407 6.6228 17 1 7.5730 3.7849 7.5000 18 7 9.6020 3.5103 7.0462 19 6 10.0620 4.0618 8.2121 20 1 9.4052 4.6670 8.8193 21 6 11.3727 3.8431 8.6136 22 7 12.1731 3.1052 7.8738 23 14 12.0005 4.5960 10.2036 24 1 11.7616 3.6534 11.3259 25 1 13.4563 4.8638 10.0836 26 1 11.2829 5.8695 10.4654 27 6 7.7657 2.5967 5.7134 28 6 6.3202 2.8377 5.2720 29 6 2.2628 2.0723 1.1970 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.0824 1.5636 -2.1326 36 1 2.9018 3.8854 -2.1326 37 1 3.3054 5.0487 0.0001 38 1 2.2941 3.7022 3.2617 39 1 2.8085 5.1553 2.3718 40 1 4.2615 4.9348 4.6305 41 1 6.6268 6.2472 4.8733 42 1 6.0419 5.3492 6.2945 43 1 8.7781 5.0195 4.9820 44 1 8.4551 5.8786 6.5073 45 1 10.1920 2.9670 6.5007 46 1 13.0889 2.9520 8.1546 47 1 7.8265 1.6541 6.2576 48 1 8.4112 2.5525 4.8362 49 1 5.6745 2.8821 6.1489 50 1 5.9975 2.0226 4.6241 51 1 2.0824 1.5634 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034673511.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:46 Heat of formation + Delta-G solvation = -33.924883 kcal Electronic energy + Delta-G solvation = -27425.183313 eV Core-core repulsion = 23708.973543 eV Total energy + Delta-G solvation = -3716.209770 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.34493 -39.35938 -37.87956 -34.90586 -34.61257 -33.10415 -32.55626 -30.67155 -30.38328 -29.76453 -28.27146 -26.75999 -24.21140 -23.67505 -22.41902 -22.28550 -21.41430 -20.64444 -20.18852 -19.36004 -17.23132 -16.93259 -16.75475 -16.20174 -16.06215 -15.26652 -15.10677 -14.88635 -14.21484 -14.11097 -13.93766 -13.77749 -13.73187 -13.54252 -13.38615 -13.14776 -12.82997 -12.64162 -12.40439 -12.28586 -12.02215 -11.99630 -11.77085 -11.55870 -11.42472 -11.10479 -11.01432 -10.88370 -10.76835 -10.72309 -10.68409 -10.24609 -10.14389 -9.91689 -9.69767 -9.53242 -8.98168 -8.94769 -8.83652 -8.78884 -6.92730 -5.74071 -3.02631 1.13996 1.22544 2.60755 3.11101 3.44174 3.49022 3.50990 3.63928 4.35933 4.45107 4.60447 4.61132 4.76219 4.84435 4.89451 4.97736 4.99541 5.05364 5.09487 5.17611 5.19287 5.31013 5.32811 5.39270 5.55382 5.58499 5.59601 5.60477 5.67939 5.76859 5.80151 5.85769 5.88661 5.90467 5.92622 6.06472 6.27080 6.30187 6.31432 6.33005 6.36651 6.42553 6.47030 6.61031 6.67089 6.72209 6.82297 7.00072 7.14508 7.48575 7.71567 8.21643 8.44715 9.55490 10.14813 10.49343 11.48666 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026810 B = 0.001869 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.150803 B =14980.004527 C =15352.136224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.081 4.081 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.110 4.110 7 C -0.061 4.061 8 C -0.104 4.104 9 C 0.511 3.489 10 O -0.529 6.529 11 N -0.728 5.728 12 C 0.145 3.855 13 H 0.086 0.914 14 C -0.121 4.121 15 C -0.132 4.132 16 C 0.177 3.823 17 H 0.046 0.954 18 N -0.725 5.725 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.015 4.015 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.283 1.283 27 C -0.121 4.121 28 C -0.120 4.120 29 C -0.102 4.102 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.397 0.603 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.066 0.934 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.065 0.935 48 H 0.060 0.940 49 H 0.060 0.940 50 H 0.060 0.940 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.573 0.559 -16.087 31.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 C -0.081 4.081 4 C -0.138 4.138 5 C -0.134 4.134 6 C -0.128 4.128 7 C -0.061 4.061 8 C -0.144 4.144 9 C 0.297 3.703 10 O -0.405 6.405 11 N -0.379 5.379 12 C 0.042 3.958 13 H 0.104 0.896 14 C -0.160 4.160 15 C -0.173 4.173 16 C 0.067 3.933 17 H 0.064 0.936 18 N -0.366 5.366 19 C -0.368 4.368 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.581 5.581 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.160 4.160 28 C -0.159 4.159 29 C -0.120 4.120 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.231 0.769 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.083 0.917 48 H 0.079 0.921 49 H 0.079 0.921 50 H 0.079 0.921 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -25.980 0.143 -16.411 30.729 hybrid contribution 0.436 0.604 0.991 1.240 sum -25.544 0.747 -15.420 29.847 Atomic orbital electron populations 1.21744 0.94756 1.01666 1.02120 1.20549 0.96082 0.92731 1.02994 1.19832 0.99121 0.96102 0.93088 1.20991 1.00389 0.95005 0.97405 1.21064 0.99538 0.94974 0.97848 1.20950 0.99873 0.99993 0.92025 1.19235 0.98892 0.94376 0.93598 1.20702 0.94935 1.02445 0.96316 1.20489 0.89298 0.79681 0.80843 1.90747 1.57985 1.38004 1.53728 1.46198 1.14288 1.53499 1.23875 1.21095 0.81452 0.95383 0.97899 0.89566 1.21807 0.99001 0.96686 0.98485 1.22224 0.92975 1.01332 1.00754 1.20235 0.87877 0.91040 0.94104 0.93644 1.42443 1.07485 1.61102 1.25542 1.19241 0.94833 1.24635 0.98128 0.91234 1.24749 0.96640 1.00808 0.98927 1.69667 1.06540 1.43110 1.38812 0.86209 0.77990 0.78664 0.83436 1.21790 1.21822 1.20827 1.21770 0.94505 0.99795 0.99934 1.21838 0.97935 0.96728 0.99411 1.20826 0.99679 0.93913 0.97610 0.92568 0.92637 0.92425 0.91044 0.90962 0.86347 0.86145 0.86353 0.88053 0.88052 0.76922 0.92301 0.91869 0.92430 0.91575 0.78283 0.93553 0.91668 0.92091 0.92110 0.92122 0.86381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.90 37.16 0.37 -0.52 16 2 C -0.09 -0.64 6.06 -27.88 -0.17 -0.81 16 3 C -0.08 -0.77 5.13 -104.62 -0.54 -1.31 16 4 C -0.12 -1.09 9.70 -39.59 -0.38 -1.48 16 5 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 6 C -0.11 -1.09 9.70 -39.58 -0.38 -1.47 16 7 C -0.06 -0.61 4.37 -104.63 -0.46 -1.07 16 8 C -0.10 -0.84 5.83 -29.04 -0.17 -1.01 16 9 C 0.51 6.01 7.79 -10.98 -0.09 5.92 16 10 O -0.53 -8.72 15.70 5.56 0.09 -8.63 16 11 N -0.73 -7.55 5.08 -53.81 -0.27 -7.83 16 12 C 0.15 1.93 2.45 -67.93 -0.17 1.76 16 13 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 14 C -0.12 -1.58 5.39 -26.73 -0.14 -1.72 16 15 C -0.13 -2.29 5.50 -26.73 -0.15 -2.44 16 16 C 0.18 3.49 2.77 -67.93 -0.19 3.30 16 17 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 18 N -0.73 -18.27 5.12 -53.42 -0.27 -18.54 16 19 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 20 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 21 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 22 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 23 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 C -0.12 -2.09 5.39 -26.71 -0.14 -2.23 16 28 C -0.12 -1.71 5.50 -26.71 -0.15 -1.86 16 29 C -0.10 -1.03 9.36 -39.58 -0.37 -1.40 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 34 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 35 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 36 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 37 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.10 0.60 8.09 -51.93 -0.42 0.18 16 39 H 0.10 0.58 8.08 -51.93 -0.42 0.16 16 40 H 0.40 2.86 8.60 -40.82 -0.35 2.51 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.38 10.36 7.80 -40.82 -0.32 10.04 16 46 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 47 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 48 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 49 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 50 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 51 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 412.49 15.07 6.22 6.22 Total: -1.00 -33.58 412.49 -11.36 -44.94 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -9.05 Total: 9.18 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -3.77 Total: -15.06 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.18 Total: -54.08 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.09 Total: -8.63 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.58 -11.36 -44.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034673511.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.013 kcal (2) G-P(sol) polarization free energy of solvation -33.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds