Wall clock time and date at job start Tue Mar 31 2020 16:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47225 * 2 1 4 4 C 1.38256 * 120.00191 * 270.02413 * 3 2 1 5 5 C 1.38207 * 120.00018 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.00174 * 359.81472 * 5 4 3 7 7 C 1.38213 * 119.99653 * 0.41370 * 6 5 4 8 8 C 1.50695 * 119.99963 * 179.81225 * 7 6 5 9 9 C 1.50703 * 109.47099 * 269.72993 * 8 7 6 10 10 O 1.21279 * 120.00177 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00040 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00074 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.46813 * 35.00305 * 12 11 9 14 14 C 1.53000 * 109.46840 * 155.00031 * 12 11 9 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.47127 * 300.00449 * 15 14 12 17 17 H 1.09001 * 109.47002 * 299.99574 * 16 15 14 18 18 N 1.46504 * 109.46883 * 180.02562 * 16 15 14 19 19 C 1.36932 * 120.00287 * 85.00233 * 18 16 15 20 20 H 1.08003 * 120.00064 * 359.97438 * 19 18 16 21 21 C 1.38811 * 120.00254 * 179.97438 * 19 18 16 22 22 N 1.31621 * 119.99809 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00161 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47617 * 89.99792 * 23 21 19 25 25 H 1.48505 * 109.47116 * 209.99875 * 23 21 19 26 26 H 1.48504 * 109.46948 * 329.99386 * 23 21 19 27 27 C 1.52997 * 109.47164 * 59.99836 * 16 15 14 28 28 C 1.52996 * 109.47185 * 275.00149 * 12 11 9 29 29 C 1.38217 * 119.99824 * 90.00073 * 3 2 1 30 30 H 1.09002 * 109.46690 * 300.00008 * 1 2 3 31 31 H 1.09005 * 109.46770 * 59.99999 * 1 2 3 32 32 H 1.08999 * 109.46707 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47159 * 240.00570 * 2 1 3 34 34 H 1.08995 * 109.47290 * 120.00089 * 2 1 3 35 35 H 1.08004 * 119.99819 * 359.97438 * 4 3 2 36 36 H 1.08005 * 119.99771 * 180.02562 * 5 4 3 37 37 H 1.07999 * 119.99834 * 180.23136 * 6 5 4 38 38 H 1.09002 * 109.47342 * 149.72920 * 8 7 6 39 39 H 1.09003 * 109.47335 * 29.72777 * 8 7 6 40 40 H 0.97002 * 119.99499 * 0.02562 * 11 9 8 41 41 H 1.09002 * 109.47398 * 300.00326 * 14 12 11 42 42 H 1.09001 * 109.47194 * 60.00507 * 14 12 11 43 43 H 1.08998 * 109.47533 * 59.99948 * 15 14 12 44 44 H 1.08996 * 109.47853 * 180.02562 * 15 14 12 45 45 H 0.97003 * 119.99624 * 264.99510 * 18 16 15 46 46 H 0.97001 * 119.99763 * 180.02562 * 22 21 19 47 47 H 1.09002 * 109.47045 * 180.02562 * 27 16 15 48 48 H 1.09001 * 109.47375 * 59.99966 * 27 16 15 49 49 H 1.08992 * 109.47554 * 299.99819 * 28 12 11 50 50 H 1.09004 * 109.47108 * 60.00069 * 28 12 11 51 51 H 1.07998 * 120.00057 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2624 2.0728 -1.1973 5 6 2.7226 3.3760 -1.1973 6 6 2.9494 4.0290 0.0001 7 6 2.7240 3.3757 1.1970 8 6 2.9751 4.0860 2.5021 9 6 4.3983 3.8488 2.9374 10 8 5.1358 3.1694 2.2552 11 7 4.8515 4.3917 4.0848 12 6 6.2348 4.1606 4.5082 13 1 6.8806 4.1161 3.6311 14 6 6.6877 5.3047 5.4175 15 6 8.1325 5.0638 5.8592 16 6 8.2185 3.7407 6.6228 17 1 7.5730 3.7849 7.5000 18 7 9.6020 3.5103 7.0462 19 6 10.0620 4.0618 8.2121 20 1 9.4052 4.6670 8.8193 21 6 11.3727 3.8431 8.6136 22 7 12.1731 3.1052 7.8738 23 14 12.0005 4.5960 10.2036 24 1 11.7616 3.6534 11.3259 25 1 13.4563 4.8638 10.0836 26 1 11.2829 5.8695 10.4654 27 6 7.7657 2.5967 5.7134 28 6 6.3202 2.8377 5.2720 29 6 2.2628 2.0723 1.1970 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.0824 1.5636 -2.1326 36 1 2.9018 3.8854 -2.1326 37 1 3.3054 5.0487 0.0001 38 1 2.2941 3.7022 3.2617 39 1 2.8085 5.1553 2.3718 40 1 4.2615 4.9348 4.6305 41 1 6.6268 6.2472 4.8733 42 1 6.0419 5.3492 6.2945 43 1 8.7781 5.0195 4.9820 44 1 8.4551 5.8786 6.5073 45 1 10.1920 2.9670 6.5007 46 1 13.0889 2.9520 8.1546 47 1 7.8265 1.6541 6.2576 48 1 8.4112 2.5525 4.8362 49 1 5.6745 2.8821 6.1489 50 1 5.9975 2.0226 4.6241 51 1 2.0824 1.5634 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034673511.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:46 Heat of formation + Delta-G solvation = -53.276648 kcal Electronic energy + Delta-G solvation = -27426.022469 eV Core-core repulsion = 23708.973543 eV Total energy + Delta-G solvation = -3717.048926 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.23619 -40.20654 -39.13074 -36.35558 -35.29797 -34.61947 -33.36744 -32.36051 -31.69139 -30.40812 -29.42912 -27.93050 -25.54446 -24.78689 -23.62486 -23.26022 -22.47815 -21.64052 -21.17423 -20.57716 -19.10497 -18.00236 -17.53056 -17.17521 -16.80879 -16.76177 -16.00131 -15.90408 -15.62564 -15.36819 -15.10862 -14.93500 -14.62691 -14.53750 -14.39614 -14.09589 -13.95232 -13.77852 -13.62379 -13.16253 -13.08731 -12.95026 -12.83662 -12.78127 -12.59278 -12.41297 -12.22380 -12.12803 -12.03600 -11.99898 -11.70169 -11.68982 -11.62120 -11.60517 -11.14614 -10.85349 -10.82849 -9.98218 -9.65916 -9.47407 -8.99145 -7.92452 -5.21086 0.44526 0.53214 1.47389 1.49389 1.57594 1.72137 2.24063 2.57455 2.92553 3.40474 3.69437 3.75374 3.83357 3.84484 3.89940 4.00746 4.12458 4.24846 4.26135 4.30724 4.38679 4.40999 4.41848 4.50975 4.54934 4.59470 4.59629 4.64470 4.67683 4.71056 4.80548 4.86450 5.00525 5.03140 5.09555 5.11969 5.14424 5.21421 5.23172 5.25160 5.29515 5.38627 5.48923 5.54899 5.58911 5.60163 5.65540 5.68357 5.75131 6.16545 6.29699 6.67181 7.34783 7.37473 8.12285 8.34933 9.31478 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026810 B = 0.001869 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.150803 B =14980.004527 C =15352.136224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 C -0.093 4.093 4 C -0.132 4.132 5 C -0.127 4.127 6 C -0.128 4.128 7 C -0.075 4.075 8 C -0.095 4.095 9 C 0.510 3.490 10 O -0.582 6.582 11 N -0.712 5.712 12 C 0.153 3.847 13 H 0.058 0.942 14 C -0.106 4.106 15 C -0.124 4.124 16 C 0.173 3.827 17 H 0.049 0.951 18 N -0.741 5.741 19 C -0.234 4.234 20 H 0.079 0.921 21 C -0.082 4.082 22 N -0.973 5.973 23 Si 0.973 3.027 24 H -0.288 1.288 25 H -0.299 1.299 26 H -0.267 1.267 27 C -0.113 4.113 28 C -0.109 4.109 29 C -0.120 4.120 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.418 0.582 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.040 0.960 44 H 0.052 0.948 45 H 0.369 0.631 46 H 0.249 0.751 47 H 0.054 0.946 48 H 0.045 0.955 49 H 0.080 0.920 50 H 0.053 0.947 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.383 1.986 -15.575 33.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 C -0.093 4.093 4 C -0.150 4.150 5 C -0.144 4.144 6 C -0.146 4.146 7 C -0.076 4.076 8 C -0.134 4.134 9 C 0.298 3.702 10 O -0.461 6.461 11 N -0.364 5.364 12 C 0.048 3.952 13 H 0.077 0.923 14 C -0.145 4.145 15 C -0.165 4.165 16 C 0.065 3.935 17 H 0.067 0.933 18 N -0.380 5.380 19 C -0.366 4.366 20 H 0.097 0.903 21 C -0.274 4.274 22 N -0.625 5.625 23 Si 0.802 3.198 24 H -0.215 1.215 25 H -0.225 1.225 26 H -0.191 1.191 27 C -0.152 4.152 28 C -0.148 4.148 29 C -0.139 4.139 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.255 0.745 41 H 0.098 0.902 42 H 0.105 0.895 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.200 0.800 46 H 0.058 0.942 47 H 0.073 0.927 48 H 0.064 0.936 49 H 0.099 0.901 50 H 0.072 0.928 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -28.881 1.618 -15.879 32.998 hybrid contribution 1.258 0.127 0.762 1.476 sum -27.622 1.745 -15.118 31.537 Atomic orbital electron populations 1.21709 0.93680 1.02374 1.02063 1.20584 0.96986 0.91691 1.03102 1.20134 0.98937 0.97008 0.93186 1.21269 1.00362 0.95258 0.98085 1.21373 0.99225 0.95252 0.98593 1.21228 1.00213 1.00762 0.92360 1.19523 0.98824 0.94625 0.94596 1.20740 0.92464 1.04205 0.95996 1.21146 0.90358 0.78434 0.80258 1.90737 1.59667 1.40414 1.55325 1.45956 1.13224 1.53347 1.23852 1.20772 0.82846 0.94874 0.96689 0.92340 1.21662 0.95992 0.97330 0.99497 1.22015 0.95981 0.99116 0.99384 1.20487 0.85164 0.93011 0.94861 0.93285 1.42706 1.09435 1.60896 1.24983 1.19658 0.94939 1.23464 0.98562 0.90288 1.25596 0.97191 1.02141 1.02460 1.69840 1.06545 1.45262 1.40806 0.85137 0.76852 0.78337 0.79439 1.21523 1.22545 1.19146 1.21646 0.96441 0.98456 0.98671 1.21726 0.95739 0.97227 1.00077 1.21060 1.00297 0.94350 0.98146 0.92760 0.92534 0.91322 0.90542 0.91240 0.84816 0.84503 0.85294 0.85340 0.85141 0.74467 0.90222 0.89463 0.94154 0.92923 0.79964 0.94216 0.92697 0.93606 0.90102 0.92847 0.85832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.90 71.98 0.71 -0.84 16 2 C -0.09 -1.22 6.06 29.85 0.18 -1.04 16 3 C -0.09 -1.69 5.13 -19.86 -0.10 -1.80 16 4 C -0.13 -2.31 9.70 22.27 0.22 -2.10 16 5 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 6 C -0.13 -2.38 9.70 22.27 0.22 -2.16 16 7 C -0.08 -1.41 4.37 -19.87 -0.09 -1.50 16 8 C -0.09 -1.25 5.83 29.10 0.17 -1.08 16 9 C 0.51 10.97 7.79 87.66 0.68 11.65 16 10 O -0.58 -18.99 15.70 -3.03 -0.05 -19.04 16 11 N -0.71 -12.65 5.08 -442.53 -2.25 -14.90 16 12 C 0.15 3.78 2.45 44.99 0.11 3.89 16 13 H 0.06 1.82 7.58 -2.39 -0.02 1.80 16 14 C -0.11 -2.47 5.39 30.59 0.16 -2.31 16 15 C -0.12 -4.22 5.50 30.60 0.17 -4.05 16 16 C 0.17 6.74 2.77 44.99 0.12 6.87 16 17 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 18 N -0.74 -38.01 5.12 -322.93 -1.65 -39.67 16 19 C -0.23 -13.03 9.93 84.03 0.83 -12.20 16 20 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 21 C -0.08 -4.77 5.50 84.86 0.47 -4.31 16 22 N -0.97 -60.87 13.06 21.65 0.28 -60.59 16 23 Si 0.97 46.44 29.55 68.60 2.03 48.47 16 24 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 25 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 27 C -0.11 -3.93 5.39 30.61 0.17 -3.77 16 28 C -0.11 -2.96 5.50 30.61 0.17 -2.79 16 29 C -0.12 -2.32 9.36 22.27 0.21 -2.12 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 34 H 0.07 1.00 8.08 -2.39 -0.02 0.98 16 35 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 37 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 38 H 0.13 1.02 8.09 -2.39 -0.02 1.00 16 39 H 0.13 0.98 8.08 -2.39 -0.02 0.96 16 40 H 0.42 4.15 8.60 -92.71 -0.80 3.35 16 41 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.37 20.73 7.80 -92.71 -0.72 20.00 16 46 H 0.25 15.14 8.31 -92.71 -0.77 14.36 16 47 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 49 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 51 H 0.12 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -75.00 412.49 2.37 -72.63 By element: Atomic # 1 Polarization: 35.34 SS G_CDS: -0.62 Total: 34.73 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: 4.62 Total: -21.64 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -3.62 Total: -115.15 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.05 Total: -19.04 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -75.00 2.37 -72.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034673511.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.353 kcal (2) G-P(sol) polarization free energy of solvation -75.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds