Wall clock time and date at job start Tue Mar 31 2020 16:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.47247 * 2 1 4 4 C 1.38241 * 119.99727 * 89.99839 * 3 2 1 5 5 C 1.38235 * 119.99811 * 180.02562 * 4 3 2 6 6 C 1.38234 * 120.00124 * 359.95907 * 5 4 3 7 7 C 1.50697 * 119.99921 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.47408 * 89.99583 * 7 6 5 9 9 O 1.21286 * 119.99942 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99992 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99807 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.47173 * 35.00688 * 11 10 8 13 13 C 1.53006 * 109.46770 * 155.00441 * 11 10 8 14 14 C 1.53000 * 109.46849 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47146 * 299.99722 * 14 13 11 16 16 H 1.09001 * 109.47274 * 300.00414 * 15 14 13 17 17 N 1.46504 * 109.47114 * 179.97438 * 15 14 13 18 18 C 1.36943 * 119.99781 * 155.00305 * 17 15 14 19 19 H 1.08002 * 119.99788 * 359.97438 * 18 17 15 20 20 C 1.38811 * 119.99622 * 180.27904 * 18 17 15 21 21 N 1.31614 * 120.00467 * 359.72375 * 20 18 17 22 22 Si 1.86801 * 119.99700 * 179.72266 * 20 18 17 23 23 H 1.48501 * 109.46896 * 89.99850 * 22 20 18 24 24 H 1.48499 * 109.47039 * 210.00011 * 22 20 18 25 25 H 1.48501 * 109.47275 * 329.99811 * 22 20 18 26 26 C 1.53006 * 109.47020 * 60.00383 * 15 14 13 27 27 C 1.53000 * 109.46849 * 299.99799 * 26 15 14 28 28 C 1.38235 * 119.99651 * 0.27424 * 6 5 4 29 29 C 1.38226 * 120.00205 * 270.01799 * 3 2 1 30 30 H 1.09003 * 109.47209 * 60.00094 * 1 2 3 31 31 H 1.09008 * 109.47053 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47541 * 300.00046 * 1 2 3 33 33 H 1.09002 * 109.47633 * 240.00041 * 2 1 3 34 34 H 1.09010 * 109.47080 * 120.00265 * 2 1 3 35 35 H 1.07998 * 119.99830 * 0.02562 * 4 3 2 36 36 H 1.08004 * 119.99438 * 179.97438 * 5 4 3 37 37 H 1.09003 * 109.47070 * 329.98930 * 7 6 5 38 38 H 1.09004 * 109.46983 * 210.00206 * 7 6 5 39 39 H 0.96996 * 120.00130 * 0.02562 * 10 8 7 40 40 H 1.09002 * 109.47199 * 60.00723 * 13 11 10 41 41 H 1.08996 * 109.47059 * 300.00120 * 13 11 10 42 42 H 1.09000 * 109.47253 * 180.02562 * 14 13 11 43 43 H 1.09001 * 109.47372 * 60.00076 * 14 13 11 44 44 H 0.97000 * 120.00410 * 335.00630 * 17 15 14 45 45 H 0.96995 * 120.00147 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.47072 * 59.99907 * 26 15 14 47 47 H 1.08996 * 109.47059 * 179.97438 * 26 15 14 48 48 H 1.08993 * 109.47255 * 300.00205 * 27 26 15 49 49 H 1.08998 * 109.46814 * 179.97438 * 27 26 15 50 50 H 1.08002 * 119.99713 * 179.73401 * 28 6 5 51 51 H 1.08000 * 120.00072 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7230 3.3759 1.1973 6 6 2.9537 4.0274 0.0001 7 6 3.4561 5.4482 0.0002 8 6 4.9630 5.4482 0.0008 9 8 5.5695 4.3979 0.0006 10 7 5.6369 6.6155 0.0004 11 6 7.1019 6.6155 0.0015 12 1 7.4656 5.7733 -0.5872 13 6 7.6123 7.9225 -0.6087 14 6 9.1423 7.9222 -0.6081 15 6 9.6517 7.7972 0.8292 16 1 9.2883 8.6394 1.4180 17 7 11.1168 7.7964 0.8296 18 6 11.8013 8.2023 1.9440 19 1 11.2611 8.5235 2.8224 20 6 13.1894 8.2070 1.9425 21 7 13.8477 7.8161 0.8719 22 14 14.1232 8.7681 3.4599 23 1 14.3755 7.6026 4.3449 24 1 15.4183 9.3683 3.0504 25 1 13.3181 9.7795 4.1908 26 6 9.1413 6.4902 1.4393 27 6 7.6113 6.4905 1.4388 28 6 2.7188 3.3774 -1.1970 29 6 2.2624 2.0725 -1.1971 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.0830 1.5631 2.1325 36 1 2.9025 3.8851 2.1327 37 1 3.0923 5.9621 0.8900 38 1 3.0930 5.9620 -0.8899 39 1 5.1519 7.4555 0.0002 40 1 7.2486 8.7647 -0.0200 41 1 7.2497 8.0113 -1.6327 42 1 9.5059 8.8535 -1.0423 43 1 9.5057 7.0800 -1.1970 44 1 11.6019 7.5083 0.0406 45 1 14.8176 7.8190 0.8709 46 1 9.5048 5.6480 0.8504 47 1 9.5046 6.4009 2.4631 48 1 7.2479 7.3326 2.0276 49 1 7.2477 5.5592 1.8730 50 1 2.8950 3.8879 -2.1323 51 1 2.0817 1.5637 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034746485.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:49 Heat of formation + Delta-G solvation = -33.801897 kcal Electronic energy + Delta-G solvation = -27295.443591 eV Core-core repulsion = 23579.239153 eV Total energy + Delta-G solvation = -3716.204437 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.32739 -39.35917 -37.89085 -35.01264 -34.68392 -33.04661 -31.63826 -31.10418 -30.52319 -30.37685 -28.00760 -26.71702 -23.88264 -23.29960 -22.93894 -22.33739 -21.35306 -20.72446 -20.30499 -19.40785 -17.30646 -16.83497 -16.66724 -16.09505 -15.98120 -15.30033 -15.07319 -14.90020 -14.21434 -14.03893 -13.99615 -13.82981 -13.69246 -13.58303 -13.49291 -13.10576 -13.05202 -12.62475 -12.29627 -12.26190 -11.97889 -11.94306 -11.78709 -11.49281 -11.41549 -11.09965 -11.05119 -11.00246 -10.80758 -10.74215 -10.64827 -10.16753 -10.08711 -9.88048 -9.73623 -9.56307 -9.06753 -8.94075 -8.82516 -8.69852 -6.91893 -5.73594 -3.01976 1.11767 1.25956 2.61927 3.11241 3.45163 3.50138 3.51729 3.64434 4.37518 4.52341 4.56274 4.61105 4.75308 4.79092 4.81557 4.98305 5.02381 5.03592 5.09158 5.17766 5.20541 5.30510 5.31186 5.40492 5.54176 5.55813 5.62235 5.63628 5.70462 5.75476 5.78191 5.86985 5.89884 5.89994 5.90800 6.05230 6.22306 6.26121 6.29928 6.33007 6.40010 6.42828 6.50818 6.59373 6.68694 6.75090 6.82908 7.01337 7.17617 7.49077 7.72785 8.22815 8.45313 9.56189 10.15099 10.49612 11.49199 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024324 B = 0.001841 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.857782 B =15207.706759 C =15705.692133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.084 4.084 4 C -0.117 4.117 5 C -0.102 4.102 6 C -0.068 4.068 7 C -0.103 4.103 8 C 0.511 3.489 9 O -0.529 6.529 10 N -0.728 5.728 11 C 0.145 3.855 12 H 0.086 0.914 13 C -0.118 4.118 14 C -0.121 4.121 15 C 0.177 3.823 16 H 0.046 0.954 17 N -0.725 5.725 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.933 5.933 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.132 4.132 27 C -0.123 4.123 28 C -0.102 4.102 29 C -0.117 4.117 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.397 0.603 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.056 0.944 47 H 0.063 0.937 48 H 0.057 0.943 49 H 0.057 0.943 50 H 0.119 0.881 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.118 -7.951 -4.300 31.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.084 4.084 4 C -0.135 4.135 5 C -0.120 4.120 6 C -0.069 4.069 7 C -0.143 4.143 8 C 0.297 3.703 9 O -0.404 6.404 10 N -0.379 5.379 11 C 0.042 3.958 12 H 0.104 0.896 13 C -0.157 4.157 14 C -0.160 4.160 15 C 0.067 3.933 16 H 0.064 0.936 17 N -0.366 5.366 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.582 5.582 22 Si 0.737 3.263 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.173 4.173 27 C -0.162 4.162 28 C -0.120 4.120 29 C -0.135 4.135 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.230 0.770 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.076 0.924 49 H 0.075 0.925 50 H 0.137 0.863 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -29.588 -8.634 -4.146 31.100 hybrid contribution 0.618 0.619 0.647 1.089 sum -28.969 -8.015 -3.499 30.261 Atomic orbital electron populations 1.21743 0.94779 1.01622 1.02157 1.20546 0.96080 0.92799 1.02898 1.19874 0.99195 0.96108 0.93259 1.20956 1.00275 0.94754 0.97494 1.20955 0.98716 0.94925 0.97362 1.19242 0.99284 0.94753 0.93602 1.20692 0.92856 0.95674 1.05102 1.20499 0.89501 0.84007 0.76337 1.90753 1.70136 1.31182 1.48347 1.46185 1.07818 1.08220 1.75669 1.21093 0.77924 0.99210 0.97610 0.89575 1.21745 0.97312 0.96314 1.00302 1.21754 0.92846 1.02295 0.99058 1.20239 0.85633 0.94579 0.92806 0.93631 1.42432 0.99203 1.78924 1.16019 1.19248 0.89022 1.35746 0.92801 0.91237 1.24734 0.96429 1.02437 0.97456 1.69658 1.06772 1.53908 1.27850 0.86212 0.79486 0.78190 0.82444 1.21783 1.21817 1.20819 1.22224 0.92070 1.00844 1.02181 1.21885 0.97618 1.01300 0.95414 1.20941 0.98871 0.94913 0.97305 1.20944 1.00366 0.94736 0.97472 0.92603 0.92468 0.92583 0.91068 0.91053 0.86230 0.86266 0.88064 0.88105 0.76956 0.91600 0.91948 0.91386 0.91995 0.78314 0.93568 0.92537 0.91852 0.92383 0.92461 0.86308 0.86254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.89 37.16 0.37 -0.48 16 2 C -0.09 -0.60 6.06 -27.89 -0.17 -0.77 16 3 C -0.08 -0.78 5.13 -104.63 -0.54 -1.32 16 4 C -0.12 -1.12 9.70 -39.58 -0.38 -1.50 16 5 C -0.10 -1.03 9.70 -39.58 -0.38 -1.41 16 6 C -0.07 -0.69 4.37 -104.63 -0.46 -1.15 16 7 C -0.10 -0.84 5.83 -29.04 -0.17 -1.01 16 8 C 0.51 6.07 7.79 -10.99 -0.09 5.98 16 9 O -0.53 -8.84 15.70 5.55 0.09 -8.76 16 10 N -0.73 -7.56 5.08 -53.80 -0.27 -7.83 16 11 C 0.15 1.93 2.45 -67.93 -0.17 1.76 16 12 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 13 C -0.12 -1.45 5.39 -26.73 -0.14 -1.60 16 14 C -0.12 -1.94 5.39 -26.73 -0.14 -2.08 16 15 C 0.18 3.49 2.77 -67.93 -0.19 3.30 16 16 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 17 N -0.73 -18.27 5.12 -53.42 -0.27 -18.55 16 18 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 20 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 21 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 22 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 26 C -0.13 -2.45 5.50 -26.73 -0.15 -2.59 16 27 C -0.12 -1.85 5.50 -26.73 -0.15 -1.99 16 28 C -0.10 -1.01 9.70 -39.58 -0.38 -1.40 16 29 C -0.12 -1.10 9.70 -39.59 -0.38 -1.49 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.27 8.14 -51.92 -0.42 -0.15 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 34 H 0.07 0.47 8.09 -51.92 -0.42 0.05 16 35 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 37 H 0.10 0.60 8.09 -51.93 -0.42 0.18 16 38 H 0.10 0.58 8.08 -51.93 -0.42 0.16 16 39 H 0.40 2.81 8.60 -40.82 -0.35 2.46 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.38 10.29 7.80 -40.82 -0.32 9.97 16 45 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 48 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 51 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 412.48 15.07 6.22 6.22 Total: -1.00 -33.87 412.48 -11.36 -45.23 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -9.05 Total: 8.90 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -3.77 Total: -15.05 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: 0.18 Total: -54.12 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.87 -11.36 -45.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034746485.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.430 kcal (2) G-P(sol) polarization free energy of solvation -33.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds