Wall clock time and date at job start Tue Mar 31 2020 16:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.47247 * 2 1 4 4 C 1.38241 * 119.99727 * 89.99839 * 3 2 1 5 5 C 1.38235 * 119.99811 * 180.02562 * 4 3 2 6 6 C 1.38234 * 120.00124 * 359.95907 * 5 4 3 7 7 C 1.50697 * 119.99921 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.47408 * 89.99583 * 7 6 5 9 9 O 1.21286 * 119.99942 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99992 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99807 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.47173 * 35.00688 * 11 10 8 13 13 C 1.53006 * 109.46770 * 155.00441 * 11 10 8 14 14 C 1.53000 * 109.46849 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47146 * 299.99722 * 14 13 11 16 16 H 1.09001 * 109.47274 * 300.00414 * 15 14 13 17 17 N 1.46504 * 109.47114 * 179.97438 * 15 14 13 18 18 C 1.36943 * 119.99781 * 155.00305 * 17 15 14 19 19 H 1.08002 * 119.99788 * 359.97438 * 18 17 15 20 20 C 1.38811 * 119.99622 * 180.27904 * 18 17 15 21 21 N 1.31614 * 120.00467 * 359.72375 * 20 18 17 22 22 Si 1.86801 * 119.99700 * 179.72266 * 20 18 17 23 23 H 1.48501 * 109.46896 * 89.99850 * 22 20 18 24 24 H 1.48499 * 109.47039 * 210.00011 * 22 20 18 25 25 H 1.48501 * 109.47275 * 329.99811 * 22 20 18 26 26 C 1.53006 * 109.47020 * 60.00383 * 15 14 13 27 27 C 1.53000 * 109.46849 * 299.99799 * 26 15 14 28 28 C 1.38235 * 119.99651 * 0.27424 * 6 5 4 29 29 C 1.38226 * 120.00205 * 270.01799 * 3 2 1 30 30 H 1.09003 * 109.47209 * 60.00094 * 1 2 3 31 31 H 1.09008 * 109.47053 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47541 * 300.00046 * 1 2 3 33 33 H 1.09002 * 109.47633 * 240.00041 * 2 1 3 34 34 H 1.09010 * 109.47080 * 120.00265 * 2 1 3 35 35 H 1.07998 * 119.99830 * 0.02562 * 4 3 2 36 36 H 1.08004 * 119.99438 * 179.97438 * 5 4 3 37 37 H 1.09003 * 109.47070 * 329.98930 * 7 6 5 38 38 H 1.09004 * 109.46983 * 210.00206 * 7 6 5 39 39 H 0.96996 * 120.00130 * 0.02562 * 10 8 7 40 40 H 1.09002 * 109.47199 * 60.00723 * 13 11 10 41 41 H 1.08996 * 109.47059 * 300.00120 * 13 11 10 42 42 H 1.09000 * 109.47253 * 180.02562 * 14 13 11 43 43 H 1.09001 * 109.47372 * 60.00076 * 14 13 11 44 44 H 0.97000 * 120.00410 * 335.00630 * 17 15 14 45 45 H 0.96995 * 120.00147 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.47072 * 59.99907 * 26 15 14 47 47 H 1.08996 * 109.47059 * 179.97438 * 26 15 14 48 48 H 1.08993 * 109.47255 * 300.00205 * 27 26 15 49 49 H 1.08998 * 109.46814 * 179.97438 * 27 26 15 50 50 H 1.08002 * 119.99713 * 179.73401 * 28 6 5 51 51 H 1.08000 * 120.00072 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7230 3.3759 1.1973 6 6 2.9537 4.0274 0.0001 7 6 3.4561 5.4482 0.0002 8 6 4.9630 5.4482 0.0008 9 8 5.5695 4.3979 0.0006 10 7 5.6369 6.6155 0.0004 11 6 7.1019 6.6155 0.0015 12 1 7.4656 5.7733 -0.5872 13 6 7.6123 7.9225 -0.6087 14 6 9.1423 7.9222 -0.6081 15 6 9.6517 7.7972 0.8292 16 1 9.2883 8.6394 1.4180 17 7 11.1168 7.7964 0.8296 18 6 11.8013 8.2023 1.9440 19 1 11.2611 8.5235 2.8224 20 6 13.1894 8.2070 1.9425 21 7 13.8477 7.8161 0.8719 22 14 14.1232 8.7681 3.4599 23 1 14.3755 7.6026 4.3449 24 1 15.4183 9.3683 3.0504 25 1 13.3181 9.7795 4.1908 26 6 9.1413 6.4902 1.4393 27 6 7.6113 6.4905 1.4388 28 6 2.7188 3.3774 -1.1970 29 6 2.2624 2.0725 -1.1971 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.0830 1.5631 2.1325 36 1 2.9025 3.8851 2.1327 37 1 3.0923 5.9621 0.8900 38 1 3.0930 5.9620 -0.8899 39 1 5.1519 7.4555 0.0002 40 1 7.2486 8.7647 -0.0200 41 1 7.2497 8.0113 -1.6327 42 1 9.5059 8.8535 -1.0423 43 1 9.5057 7.0800 -1.1970 44 1 11.6019 7.5083 0.0406 45 1 14.8176 7.8190 0.8709 46 1 9.5048 5.6480 0.8504 47 1 9.5046 6.4009 2.4631 48 1 7.2479 7.3326 2.0276 49 1 7.2477 5.5592 1.8730 50 1 2.8950 3.8879 -2.1323 51 1 2.0817 1.5637 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034746485.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:48 Heat of formation + Delta-G solvation = -53.530704 kcal Electronic energy + Delta-G solvation = -27296.299096 eV Core-core repulsion = 23579.239153 eV Total energy + Delta-G solvation = -3717.059942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.22757 -40.20619 -39.14110 -36.37150 -35.47769 -34.61858 -32.70920 -31.91014 -31.78756 -31.68518 -29.23789 -27.75148 -25.56262 -24.20940 -23.64050 -23.60669 -22.53653 -21.64208 -21.24439 -20.74955 -19.12675 -17.98131 -17.54324 -16.96462 -16.79388 -16.67410 -16.00430 -15.91952 -15.67560 -15.37768 -15.10265 -14.84023 -14.70514 -14.61195 -14.49609 -14.16509 -14.00604 -13.72949 -13.46021 -13.19777 -13.08981 -12.93830 -12.90910 -12.79547 -12.53658 -12.40616 -12.30072 -12.12887 -12.04934 -12.03151 -11.69915 -11.65646 -11.64816 -11.45536 -11.19971 -10.90025 -10.79170 -9.97783 -9.77450 -9.39136 -8.99597 -7.93587 -5.21796 0.41776 0.54967 1.46262 1.48210 1.56340 1.72554 2.24233 2.56539 2.92030 3.39245 3.71199 3.76785 3.82371 3.89581 3.91953 3.95707 4.14247 4.17012 4.21898 4.30375 4.37845 4.41142 4.49897 4.51006 4.54988 4.60029 4.60537 4.64072 4.66748 4.74530 4.79460 4.87616 5.00936 5.05632 5.08397 5.12360 5.14486 5.20891 5.24530 5.25503 5.28163 5.38098 5.48805 5.53517 5.55135 5.58941 5.64360 5.69855 5.75496 6.16021 6.29124 6.67864 7.34433 7.38454 8.12295 8.34559 9.30121 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024324 B = 0.001841 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.857782 B =15207.706759 C =15705.692133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 C -0.094 4.094 4 C -0.131 4.131 5 C -0.118 4.118 6 C -0.085 4.085 7 C -0.093 4.093 8 C 0.509 3.491 9 O -0.584 6.584 10 N -0.711 5.711 11 C 0.153 3.847 12 H 0.058 0.942 13 C -0.104 4.104 14 C -0.114 4.114 15 C 0.173 3.827 16 H 0.049 0.951 17 N -0.740 5.740 18 C -0.237 4.237 19 H 0.076 0.924 20 C -0.079 4.079 21 N -0.971 5.971 22 Si 0.971 3.029 23 H -0.291 1.291 24 H -0.295 1.295 25 H -0.267 1.267 26 C -0.123 4.123 27 C -0.111 4.111 28 C -0.116 4.116 29 C -0.130 4.130 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.418 0.582 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.050 0.950 44 H 0.371 0.629 45 H 0.250 0.750 46 H 0.035 0.965 47 H 0.039 0.961 48 H 0.077 0.923 49 H 0.044 0.956 50 H 0.131 0.869 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.778 -6.644 -4.096 33.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.094 4.094 4 C -0.149 4.149 5 C -0.136 4.136 6 C -0.085 4.085 7 C -0.133 4.133 8 C 0.297 3.703 9 O -0.463 6.463 10 N -0.363 5.363 11 C 0.048 3.952 12 H 0.076 0.924 13 C -0.142 4.142 14 C -0.153 4.153 15 C 0.064 3.936 16 H 0.067 0.933 17 N -0.379 5.379 18 C -0.369 4.369 19 H 0.094 0.906 20 C -0.271 4.271 21 N -0.622 5.622 22 Si 0.800 3.200 23 H -0.218 1.218 24 H -0.222 1.222 25 H -0.192 1.192 26 C -0.164 4.164 27 C -0.150 4.150 28 C -0.134 4.134 29 C -0.148 4.148 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.256 0.744 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.202 0.798 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.058 0.942 48 H 0.096 0.904 49 H 0.063 0.937 50 H 0.149 0.851 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -32.332 -7.282 -3.928 33.374 hybrid contribution 1.389 0.152 0.581 1.513 sum -30.943 -7.130 -3.347 31.929 Atomic orbital electron populations 1.21710 0.93805 1.02378 1.01994 1.20587 0.96880 0.91598 1.03238 1.20176 0.98893 0.97115 0.93182 1.21220 1.00448 0.94999 0.98271 1.21217 0.99033 0.95391 0.97976 1.19530 0.99448 0.95965 0.93587 1.20728 0.89536 0.95143 1.07867 1.21186 0.91023 0.83264 0.74817 1.90742 1.71501 1.33202 1.50861 1.45943 1.06434 1.09129 1.74833 1.20775 0.79800 0.98892 0.95730 0.92358 1.21644 0.93991 0.96279 1.02330 1.21648 0.95810 1.01779 0.96060 1.20496 0.82778 0.94801 0.95480 0.93284 1.42683 1.01527 1.78796 1.14864 1.19643 0.89502 1.34196 0.93576 0.90649 1.25552 0.97511 1.03630 1.00381 1.69819 1.06537 1.55923 1.29942 0.85170 0.77930 0.77812 0.79060 1.21833 1.22198 1.19194 1.22035 0.94882 0.99433 1.00082 1.21747 0.94583 1.01466 0.97200 1.21225 0.98945 0.95328 0.97941 1.21228 1.00381 0.94986 0.98238 0.92698 0.91242 0.92799 0.90649 0.90790 0.85112 0.85469 0.85351 0.85057 0.74400 0.89202 0.89322 0.91404 0.93156 0.79780 0.94155 0.94635 0.94209 0.90400 0.93720 0.85136 0.84906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.89 71.98 0.71 -0.78 16 2 C -0.09 -1.13 6.06 29.85 0.18 -0.95 16 3 C -0.09 -1.68 5.13 -19.87 -0.10 -1.79 16 4 C -0.13 -2.47 9.70 22.27 0.22 -2.25 16 5 C -0.12 -2.30 9.70 22.27 0.22 -2.08 16 6 C -0.08 -1.60 4.37 -19.87 -0.09 -1.69 16 7 C -0.09 -1.24 5.83 29.10 0.17 -1.07 16 8 C 0.51 11.07 7.79 87.66 0.68 11.75 16 9 O -0.58 -19.40 15.70 -3.05 -0.05 -19.45 16 10 N -0.71 -12.61 5.08 -442.53 -2.25 -14.85 16 11 C 0.15 3.78 2.45 44.99 0.11 3.89 16 12 H 0.06 1.82 7.58 -2.39 -0.02 1.80 16 13 C -0.10 -2.23 5.39 30.60 0.16 -2.07 16 14 C -0.11 -3.55 5.39 30.59 0.16 -3.38 16 15 C 0.17 6.74 2.77 44.99 0.12 6.87 16 16 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 17 N -0.74 -37.93 5.12 -322.92 -1.65 -39.58 16 18 C -0.24 -13.36 9.93 84.03 0.83 -12.52 16 19 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 20 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 21 N -0.97 -60.60 13.06 21.65 0.28 -60.32 16 22 Si 0.97 46.86 29.55 68.60 2.03 48.89 16 23 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 24 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 26 C -0.12 -4.64 5.50 30.60 0.17 -4.47 16 27 C -0.11 -3.21 5.50 30.59 0.17 -3.04 16 28 C -0.12 -2.18 9.70 22.27 0.22 -1.97 16 29 C -0.13 -2.37 9.70 22.27 0.22 -2.16 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.07 0.92 8.09 -2.39 -0.02 0.90 16 34 H 0.07 0.92 8.09 -2.38 -0.02 0.90 16 35 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 36 H 0.13 2.12 8.06 -2.91 -0.02 2.09 16 37 H 0.13 1.02 8.09 -2.39 -0.02 1.00 16 38 H 0.13 0.95 8.08 -2.38 -0.02 0.93 16 39 H 0.42 4.00 8.60 -92.71 -0.80 3.20 16 40 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.37 20.56 7.80 -92.71 -0.72 19.83 16 45 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 46 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.13 2.00 8.06 -2.91 -0.02 1.97 16 51 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -76.08 412.48 2.37 -73.71 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: -0.62 Total: 33.45 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: 4.62 Total: -21.85 kcal Atomic # 7 Polarization: -111.14 SS G_CDS: -3.62 Total: -114.76 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.05 Total: -19.45 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -76.08 2.37 -73.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034746485.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.180 kcal (2) G-P(sol) polarization free energy of solvation -76.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds