Wall clock time and date at job start Tue Mar 31 2020 16:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.46889 * 2 1 4 4 C 1.38261 * 120.00382 * 265.22960 * 3 2 1 5 5 C 1.38209 * 120.00153 * 180.28187 * 4 3 2 6 6 C 1.38256 * 119.99986 * 359.73954 * 5 4 3 7 7 C 1.38213 * 120.00089 * 0.02562 * 6 5 4 8 8 C 1.38217 * 120.00025 * 85.00195 * 3 2 1 9 9 C 1.50699 * 119.99998 * 359.97438 * 8 3 2 10 10 C 1.50696 * 109.47102 * 84.72698 * 9 8 3 11 11 O 1.21281 * 120.00157 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00064 * 180.02562 * 10 9 8 13 13 C 1.46924 * 120.63155 * 0.02562 * 12 10 9 14 14 C 1.53186 * 108.77784 * 126.36930 * 13 12 10 15 15 C 1.53046 * 109.31216 * 54.63720 * 14 13 12 16 16 H 1.08998 * 109.44528 * 178.62064 * 15 14 13 17 17 N 1.46496 * 109.45966 * 58.65191 * 15 14 13 18 18 C 1.36945 * 119.99718 * 84.93473 * 17 15 14 19 19 H 1.07997 * 119.99756 * 359.97438 * 18 17 15 20 20 C 1.38805 * 119.99878 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 C 1.53040 * 109.53260 * 298.63315 * 15 14 13 27 27 H 1.08994 * 109.50376 * 301.40924 * 26 15 14 28 28 C 1.53004 * 109.49449 * 181.34701 * 26 15 14 29 29 C 1.46932 * 120.63006 * 180.02562 * 12 10 9 30 30 H 1.09001 * 109.47145 * 60.00038 * 1 2 3 31 31 H 1.08999 * 109.47371 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47179 * 299.99947 * 1 2 3 33 33 H 1.08998 * 109.47179 * 240.00053 * 2 1 3 34 34 H 1.09001 * 109.47145 * 119.99962 * 2 1 3 35 35 H 1.07999 * 119.99674 * 0.02562 * 4 3 2 36 36 H 1.07996 * 119.99949 * 179.72688 * 5 4 3 37 37 H 1.07999 * 120.00143 * 179.97438 * 6 5 4 38 38 H 1.08006 * 120.00259 * 179.97438 * 7 6 5 39 39 H 1.09000 * 109.47182 * 324.72739 * 9 8 3 40 40 H 1.09000 * 109.47308 * 204.73121 * 9 8 3 41 41 H 1.09000 * 109.58765 * 246.16184 * 13 12 10 42 42 H 1.09002 * 109.58532 * 6.43596 * 13 12 10 43 43 H 1.09002 * 109.49818 * 294.68368 * 14 13 12 44 44 H 1.08997 * 109.50005 * 174.58815 * 14 13 12 45 45 H 0.96996 * 120.00499 * 264.93203 * 17 15 14 46 46 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 47 47 H 1.09006 * 109.46741 * 60.00019 * 28 26 15 48 48 H 1.08998 * 109.47250 * 180.02562 * 28 26 15 49 49 H 1.09000 * 109.47190 * 300.00489 * 28 26 15 50 50 H 1.08997 * 109.58545 * 113.84385 * 29 12 10 51 51 H 1.08995 * 109.58591 * 353.41487 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3566 2.0395 -1.1932 5 6 2.8227 3.3406 -1.1926 6 6 2.9597 4.0253 0.0006 7 6 2.6309 3.4086 1.1930 8 6 2.1643 2.1071 1.1924 9 6 1.8054 1.4348 2.4925 10 6 2.9820 0.6320 2.9844 11 8 4.0109 0.6084 2.3427 12 7 2.8910 -0.0600 4.1374 13 6 1.6511 -0.0417 4.9256 14 6 1.2091 -1.4856 5.1829 15 6 2.3577 -2.2578 5.8361 16 1 2.0373 -3.2790 6.0425 17 7 2.7358 -1.6019 7.0902 18 6 2.0580 -1.8897 8.2448 19 1 1.2446 -2.6000 8.2307 20 6 2.4165 -1.2686 9.4333 21 7 3.4076 -0.4026 9.4504 22 14 1.4915 -1.6607 11.0081 23 1 0.3459 -0.7273 11.1548 24 1 0.9884 -3.0568 10.9522 25 1 2.4048 -1.5098 12.1693 26 6 3.5608 -2.2822 4.8906 27 1 3.2735 -2.7479 3.9480 28 6 4.6969 -3.0829 5.5303 29 6 4.0298 -0.8469 4.6302 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2495 1.5046 -2.1253 36 1 3.0802 3.8223 -2.1243 37 1 3.3243 5.0419 0.0011 38 1 2.7382 3.9433 2.1252 39 1 0.9537 0.7728 2.3362 40 1 1.5464 2.1912 3.2334 41 1 1.8298 0.4607 5.8762 42 1 0.8747 0.4875 4.3730 43 1 0.9438 -1.9589 4.2374 44 1 0.3447 -1.4887 5.8469 45 1 3.4661 -0.9637 7.1029 46 1 3.6578 0.0317 10.2809 47 1 4.3616 -4.1030 5.7178 48 1 5.5537 -3.0996 4.8568 49 1 4.9847 -2.6161 6.4723 50 1 4.4021 -0.4101 5.5568 51 1 4.8220 -0.8512 3.8817 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036080002.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:40 Heat of formation + Delta-G solvation = -14.069217 kcal Electronic energy + Delta-G solvation = -29345.154268 eV Core-core repulsion = 25629.805504 eV Total energy + Delta-G solvation = -3715.348764 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.42515 -39.27667 -37.54956 -34.40673 -34.24006 -33.03625 -32.36866 -31.38376 -29.60228 -29.18127 -28.09116 -25.92339 -24.75649 -23.89362 -23.47051 -22.09805 -21.64451 -20.75003 -19.41822 -18.13220 -17.39568 -16.83423 -16.50327 -16.14699 -15.55743 -15.04246 -14.90121 -14.48091 -14.31755 -13.99045 -13.90054 -13.66651 -13.44829 -13.33362 -13.13607 -13.01779 -12.92924 -12.53416 -12.24424 -12.11108 -11.94528 -11.87346 -11.56576 -11.41244 -11.29070 -11.19526 -10.92639 -10.86830 -10.79507 -10.73520 -10.49633 -10.45443 -10.20387 -9.84780 -9.57927 -9.55484 -8.95099 -8.80852 -8.59175 -8.19233 -6.99648 -5.81060 -3.09586 1.31124 1.38226 2.87551 3.28932 3.39602 3.45701 3.47113 3.77758 4.55442 4.58632 4.67548 4.82449 4.84556 4.90324 5.05489 5.16337 5.20521 5.26126 5.33285 5.35293 5.37695 5.43649 5.50419 5.53096 5.57298 5.58686 5.72134 5.78076 5.81343 5.82700 5.91931 5.96800 6.05742 6.07674 6.09421 6.14687 6.25389 6.30994 6.40921 6.44541 6.47031 6.50099 6.63201 6.64485 6.67800 6.76321 6.92819 6.98252 7.01631 7.66497 7.75387 8.37515 8.44900 9.49114 10.06001 10.41008 11.41302 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018619 B = 0.002899 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.474489 B = 9656.915672 C = 9863.024795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.063 4.063 4 C -0.120 4.120 5 C -0.121 4.121 6 C -0.126 4.126 7 C -0.105 4.105 8 C -0.058 4.058 9 C -0.107 4.107 10 C 0.515 3.485 11 O -0.544 6.544 12 N -0.602 5.602 13 C 0.112 3.888 14 C -0.150 4.150 15 C 0.179 3.821 16 H 0.050 0.950 17 N -0.719 5.719 18 C -0.237 4.237 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.904 3.096 23 H -0.291 1.291 24 H -0.283 1.283 25 H -0.293 1.293 26 C -0.108 4.108 27 H 0.064 0.936 28 C -0.137 4.137 29 C 0.120 3.880 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.048 0.952 44 H 0.074 0.926 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.052 0.948 48 H 0.043 0.957 49 H 0.070 0.930 50 H 0.074 0.926 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.725 3.721 -19.457 20.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.125 4.125 3 C -0.063 4.063 4 C -0.138 4.138 5 C -0.139 4.139 6 C -0.144 4.144 7 C -0.123 4.123 8 C -0.058 4.058 9 C -0.146 4.146 10 C 0.303 3.697 11 O -0.422 6.422 12 N -0.335 5.335 13 C -0.010 4.010 14 C -0.191 4.191 15 C 0.069 3.931 16 H 0.068 0.932 17 N -0.361 5.361 18 C -0.368 4.368 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.581 5.581 22 Si 0.735 3.265 23 H -0.218 1.218 24 H -0.209 1.209 25 H -0.219 1.219 26 C -0.128 4.128 27 H 0.083 0.917 28 C -0.195 4.195 29 C -0.003 4.003 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.092 0.908 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.072 0.928 48 H 0.062 0.938 49 H 0.089 0.911 50 H 0.092 0.908 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.274 3.634 -19.627 20.413 hybrid contribution -0.331 0.106 1.103 1.156 sum -4.604 3.740 -18.524 19.451 Atomic orbital electron populations 1.21770 0.94707 1.01837 1.02100 1.20559 0.95938 0.92906 1.03141 1.19663 0.98407 0.95676 0.92600 1.20949 1.00391 0.95212 0.97245 1.21066 1.00051 0.94886 0.97921 1.21046 1.00850 0.99905 0.92556 1.20997 0.98519 0.94558 0.98197 1.19179 0.99460 0.93941 0.93226 1.20782 0.98047 1.00089 0.95705 1.20359 0.89153 0.79785 0.80444 1.90682 1.31274 1.63870 1.56397 1.48138 1.15302 1.47834 1.22181 1.21741 0.84540 0.98541 0.96177 1.22520 1.01211 0.95559 0.99785 1.20204 0.90932 0.95400 0.86601 0.93198 1.42483 1.40319 1.50640 1.02672 1.19211 1.11454 1.19796 0.86360 0.91275 1.24705 0.98751 0.99609 0.97726 1.69651 1.30439 1.31501 1.26461 0.86241 0.78848 0.77709 0.83666 1.21835 1.20864 1.21894 1.21702 0.97368 0.94940 0.98760 0.91729 1.21668 0.96783 0.99806 1.01265 1.21631 0.88240 0.90640 0.99758 0.92573 0.92260 0.92454 0.91116 0.90900 0.86363 0.86391 0.86284 0.86213 0.87907 0.88169 0.89693 0.91284 0.93337 0.90760 0.78083 0.93525 0.92840 0.93805 0.91056 0.90768 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.72 37.16 0.36 -0.92 16 2 C -0.09 -0.94 5.38 -27.89 -0.15 -1.09 16 3 C -0.06 -0.77 5.13 -104.62 -0.54 -1.31 16 4 C -0.12 -1.32 9.68 -39.58 -0.38 -1.71 16 5 C -0.12 -1.27 10.05 -39.59 -0.40 -1.67 16 6 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 7 C -0.10 -1.28 9.68 -39.58 -0.38 -1.66 16 8 C -0.06 -0.74 4.37 -104.62 -0.46 -1.19 16 9 C -0.11 -1.31 3.51 -29.04 -0.10 -1.41 16 10 C 0.51 8.09 6.87 -10.99 -0.08 8.02 16 11 O -0.54 -10.32 15.45 5.56 0.09 -10.23 16 12 N -0.60 -9.54 2.97 -172.75 -0.51 -10.05 16 13 C 0.11 1.71 6.08 -3.72 -0.02 1.69 16 14 C -0.15 -2.36 5.78 -26.61 -0.15 -2.52 16 15 C 0.18 3.26 2.53 -67.89 -0.17 3.09 16 16 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 17 N -0.72 -16.24 3.64 -53.39 -0.19 -16.43 16 18 C -0.24 -6.09 9.93 -15.06 -0.15 -6.24 16 19 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -26.84 13.06 55.49 0.72 -26.12 16 22 Si 0.90 21.57 29.55 -169.99 -5.02 16.54 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 26 C -0.11 -1.75 2.67 -90.48 -0.24 -1.99 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 C -0.14 -2.21 9.05 37.16 0.34 -1.87 16 29 C 0.12 2.03 5.42 -3.69 -0.02 2.01 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.50 6.79 -51.93 -0.35 0.14 16 33 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 34 H 0.07 0.90 6.40 -51.93 -0.33 0.57 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 36 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 37 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 39 H 0.10 1.10 5.18 -51.93 -0.27 0.83 16 40 H 0.10 1.09 7.85 -51.93 -0.41 0.68 16 41 H 0.08 1.54 7.74 -51.93 -0.40 1.14 16 42 H 0.07 0.84 5.93 -51.93 -0.31 0.53 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.38 9.36 5.92 -40.82 -0.24 9.12 16 46 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 47 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 48 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.07 1.33 7.54 -51.93 -0.39 0.94 16 50 H 0.07 1.40 6.64 -51.93 -0.34 1.06 16 51 H 0.08 1.43 7.00 -51.93 -0.36 1.07 16 LS Contribution 395.91 15.07 5.97 5.97 Total: -1.00 -30.28 395.91 -10.44 -40.72 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -8.45 Total: 10.58 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -3.04 Total: -10.98 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: 0.02 Total: -52.60 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.28 -10.44 -40.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036080002.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.653 kcal (2) G-P(sol) polarization free energy of solvation -30.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds