Wall clock time and date at job start Tue Mar 31 2020 16:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.46889 * 2 1 4 4 C 1.38261 * 120.00382 * 265.22960 * 3 2 1 5 5 C 1.38209 * 120.00153 * 180.28187 * 4 3 2 6 6 C 1.38256 * 119.99986 * 359.73954 * 5 4 3 7 7 C 1.38213 * 120.00089 * 0.02562 * 6 5 4 8 8 C 1.38217 * 120.00025 * 85.00195 * 3 2 1 9 9 C 1.50699 * 119.99998 * 359.97438 * 8 3 2 10 10 C 1.50696 * 109.47102 * 84.72698 * 9 8 3 11 11 O 1.21281 * 120.00157 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00064 * 180.02562 * 10 9 8 13 13 C 1.46924 * 120.63155 * 0.02562 * 12 10 9 14 14 C 1.53186 * 108.77784 * 126.36930 * 13 12 10 15 15 C 1.53046 * 109.31216 * 54.63720 * 14 13 12 16 16 H 1.08998 * 109.44528 * 178.62064 * 15 14 13 17 17 N 1.46496 * 109.45966 * 58.65191 * 15 14 13 18 18 C 1.36945 * 119.99718 * 84.93473 * 17 15 14 19 19 H 1.07997 * 119.99756 * 359.97438 * 18 17 15 20 20 C 1.38805 * 119.99878 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 C 1.53040 * 109.53260 * 298.63315 * 15 14 13 27 27 H 1.08994 * 109.50376 * 301.40924 * 26 15 14 28 28 C 1.53004 * 109.49449 * 181.34701 * 26 15 14 29 29 C 1.46932 * 120.63006 * 180.02562 * 12 10 9 30 30 H 1.09001 * 109.47145 * 60.00038 * 1 2 3 31 31 H 1.08999 * 109.47371 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47179 * 299.99947 * 1 2 3 33 33 H 1.08998 * 109.47179 * 240.00053 * 2 1 3 34 34 H 1.09001 * 109.47145 * 119.99962 * 2 1 3 35 35 H 1.07999 * 119.99674 * 0.02562 * 4 3 2 36 36 H 1.07996 * 119.99949 * 179.72688 * 5 4 3 37 37 H 1.07999 * 120.00143 * 179.97438 * 6 5 4 38 38 H 1.08006 * 120.00259 * 179.97438 * 7 6 5 39 39 H 1.09000 * 109.47182 * 324.72739 * 9 8 3 40 40 H 1.09000 * 109.47308 * 204.73121 * 9 8 3 41 41 H 1.09000 * 109.58765 * 246.16184 * 13 12 10 42 42 H 1.09002 * 109.58532 * 6.43596 * 13 12 10 43 43 H 1.09002 * 109.49818 * 294.68368 * 14 13 12 44 44 H 1.08997 * 109.50005 * 174.58815 * 14 13 12 45 45 H 0.96996 * 120.00499 * 264.93203 * 17 15 14 46 46 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 47 47 H 1.09006 * 109.46741 * 60.00019 * 28 26 15 48 48 H 1.08998 * 109.47250 * 180.02562 * 28 26 15 49 49 H 1.09000 * 109.47190 * 300.00489 * 28 26 15 50 50 H 1.08997 * 109.58545 * 113.84385 * 29 12 10 51 51 H 1.08995 * 109.58591 * 353.41487 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3566 2.0395 -1.1932 5 6 2.8227 3.3406 -1.1926 6 6 2.9597 4.0253 0.0006 7 6 2.6309 3.4086 1.1930 8 6 2.1643 2.1071 1.1924 9 6 1.8054 1.4348 2.4925 10 6 2.9820 0.6320 2.9844 11 8 4.0109 0.6084 2.3427 12 7 2.8910 -0.0600 4.1374 13 6 1.6511 -0.0417 4.9256 14 6 1.2091 -1.4856 5.1829 15 6 2.3577 -2.2578 5.8361 16 1 2.0373 -3.2790 6.0425 17 7 2.7358 -1.6019 7.0902 18 6 2.0580 -1.8897 8.2448 19 1 1.2446 -2.6000 8.2307 20 6 2.4165 -1.2686 9.4333 21 7 3.4076 -0.4026 9.4504 22 14 1.4915 -1.6607 11.0081 23 1 0.3459 -0.7273 11.1548 24 1 0.9884 -3.0568 10.9522 25 1 2.4048 -1.5098 12.1693 26 6 3.5608 -2.2822 4.8906 27 1 3.2735 -2.7479 3.9480 28 6 4.6969 -3.0829 5.5303 29 6 4.0298 -0.8469 4.6302 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2495 1.5046 -2.1253 36 1 3.0802 3.8223 -2.1243 37 1 3.3243 5.0419 0.0011 38 1 2.7382 3.9433 2.1252 39 1 0.9537 0.7728 2.3362 40 1 1.5464 2.1912 3.2334 41 1 1.8298 0.4607 5.8762 42 1 0.8747 0.4875 4.3730 43 1 0.9438 -1.9589 4.2374 44 1 0.3447 -1.4887 5.8469 45 1 3.4661 -0.9637 7.1029 46 1 3.6578 0.0317 10.2809 47 1 4.3616 -4.1030 5.7178 48 1 5.5537 -3.0996 4.8568 49 1 4.9847 -2.6161 6.4723 50 1 4.4021 -0.4101 5.5568 51 1 4.8220 -0.8512 3.8817 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036080002.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:39 Heat of formation + Delta-G solvation = -28.735427 kcal Electronic energy + Delta-G solvation = -29345.790243 eV Core-core repulsion = 25629.805504 eV Total energy + Delta-G solvation = -3715.984739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.58002 -40.32083 -38.89809 -35.82891 -35.20832 -34.52683 -33.43691 -32.90138 -30.89631 -30.38943 -29.10831 -27.26363 -26.20701 -25.24387 -24.65613 -23.06079 -22.95156 -21.64403 -20.64551 -19.55570 -19.21718 -18.12737 -17.42684 -17.11492 -16.69856 -16.54854 -15.96610 -15.85385 -15.83909 -15.50710 -14.88446 -14.82683 -14.60515 -14.42439 -14.32239 -14.16972 -13.94786 -13.83000 -13.59875 -13.02930 -12.98611 -12.97040 -12.84909 -12.77511 -12.67939 -12.60107 -12.38941 -12.13050 -12.09289 -11.95339 -11.87578 -11.65941 -11.56233 -11.53187 -11.14418 -10.91955 -10.76871 -9.66969 -9.55861 -9.44982 -8.90564 -7.87379 -5.13443 0.45074 0.53746 1.50276 1.50998 1.58624 1.64433 2.06910 2.60860 2.88994 3.46553 3.63116 3.70926 3.86561 3.90291 3.95598 4.03604 4.07142 4.12143 4.12870 4.31559 4.33300 4.35821 4.41752 4.49424 4.53438 4.56830 4.66392 4.68213 4.72725 4.74704 4.76907 4.86800 4.97676 5.05136 5.05904 5.10857 5.14863 5.17707 5.24797 5.26568 5.31040 5.33397 5.42343 5.49133 5.61463 5.62026 5.64631 5.67727 5.78085 6.16901 6.34541 6.50232 7.19635 7.41998 8.18821 8.41945 9.35969 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018619 B = 0.002899 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.474489 B = 9656.915672 C = 9863.024795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 C -0.077 4.077 4 C -0.130 4.130 5 C -0.124 4.124 6 C -0.135 4.135 7 C -0.124 4.124 8 C -0.079 4.079 9 C -0.099 4.099 10 C 0.515 3.485 11 O -0.579 6.579 12 N -0.602 5.602 13 C 0.118 3.882 14 C -0.142 4.142 15 C 0.172 3.828 16 H 0.047 0.953 17 N -0.725 5.725 18 C -0.223 4.223 19 H 0.076 0.924 20 C -0.075 4.075 21 N -0.970 5.970 22 Si 0.963 3.037 23 H -0.290 1.290 24 H -0.272 1.272 25 H -0.304 1.304 26 C -0.097 4.097 27 H 0.085 0.915 28 C -0.132 4.132 29 C 0.125 3.875 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.137 0.863 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.051 0.949 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.373 0.627 46 H 0.247 0.753 47 H 0.060 0.940 48 H 0.062 0.938 49 H 0.038 0.962 50 H 0.047 0.953 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.531 3.262 -21.607 22.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.077 4.077 4 C -0.148 4.148 5 C -0.142 4.142 6 C -0.153 4.153 7 C -0.142 4.142 8 C -0.079 4.079 9 C -0.138 4.138 10 C 0.305 3.695 11 O -0.459 6.459 12 N -0.334 5.334 13 C -0.004 4.004 14 C -0.182 4.182 15 C 0.064 3.936 16 H 0.065 0.935 17 N -0.366 5.366 18 C -0.356 4.356 19 H 0.094 0.906 20 C -0.267 4.267 21 N -0.621 5.621 22 Si 0.794 3.206 23 H -0.217 1.217 24 H -0.197 1.197 25 H -0.231 1.231 26 C -0.117 4.117 27 H 0.104 0.896 28 C -0.190 4.190 29 C 0.002 3.998 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.155 0.845 36 H 0.161 0.839 37 H 0.156 0.844 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.132 0.868 41 H 0.070 0.930 42 H 0.124 0.876 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.206 0.794 46 H 0.055 0.945 47 H 0.079 0.921 48 H 0.081 0.919 49 H 0.057 0.943 50 H 0.065 0.935 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.126 3.142 -21.810 22.871 hybrid contribution 0.273 0.233 1.643 1.682 sum -5.853 3.375 -20.167 21.269 Atomic orbital electron populations 1.21744 0.93128 1.02614 1.02457 1.20554 0.97262 0.91996 1.02526 1.19928 0.98564 0.96358 0.92843 1.21269 1.00058 0.95681 0.97756 1.21427 0.99105 0.94827 0.98815 1.21354 1.00586 1.00927 0.92414 1.21229 0.99036 0.94859 0.99035 1.19320 1.00610 0.94396 0.93584 1.20787 0.96857 1.00186 0.95986 1.20954 0.89650 0.79172 0.79709 1.90661 1.32949 1.64936 1.57364 1.48175 1.15072 1.47758 1.22380 1.21704 0.85090 0.98395 0.95245 1.22391 0.99556 0.95535 1.00736 1.20440 0.92618 0.95099 0.85467 0.93513 1.42606 1.39792 1.50609 1.03622 1.19564 1.10586 1.18216 0.87194 0.90619 1.25385 1.00120 1.00546 1.00606 1.69809 1.32525 1.33372 1.26437 0.85285 0.77384 0.77882 0.80077 1.21727 1.19675 1.23124 1.21619 0.96535 0.94522 0.99005 0.89638 1.21606 0.97585 0.99707 1.00098 1.21441 0.88865 0.91196 0.98314 0.91942 0.91237 0.92384 0.90549 0.92648 0.84478 0.83917 0.84408 0.85882 0.85929 0.86794 0.93029 0.87595 0.90368 0.91304 0.79376 0.94452 0.92129 0.91934 0.94253 0.93513 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.72 71.98 0.70 -1.40 16 2 C -0.09 -1.68 5.38 29.85 0.16 -1.51 16 3 C -0.08 -1.74 5.13 -19.87 -0.10 -1.84 16 4 C -0.13 -2.60 9.68 22.27 0.22 -2.39 16 5 C -0.12 -2.34 10.05 22.27 0.22 -2.12 16 6 C -0.13 -2.76 10.05 22.27 0.22 -2.53 16 7 C -0.12 -2.91 9.68 22.27 0.22 -2.69 16 8 C -0.08 -1.91 4.37 -19.87 -0.09 -2.00 16 9 C -0.10 -2.26 3.51 29.10 0.10 -2.16 16 10 C 0.52 15.74 6.87 87.66 0.60 16.35 16 11 O -0.58 -21.84 15.45 -3.03 -0.05 -21.89 16 12 N -0.60 -18.63 2.97 -818.85 -2.43 -21.06 16 13 C 0.12 3.42 6.08 86.36 0.53 3.95 16 14 C -0.14 -4.17 5.78 30.67 0.18 -3.99 16 15 C 0.17 6.10 2.53 45.02 0.11 6.22 16 16 H 0.05 1.70 8.08 -2.39 -0.02 1.68 16 17 N -0.73 -33.13 3.64 -322.82 -1.18 -34.31 16 18 C -0.22 -11.49 9.93 84.03 0.83 -10.66 16 19 H 0.08 3.74 7.83 -2.91 -0.02 3.72 16 20 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 21 N -0.97 -57.58 13.06 21.65 0.28 -57.30 16 22 Si 0.96 44.84 29.55 68.60 2.03 46.86 16 23 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 26 C -0.10 -3.06 2.67 -10.70 -0.03 -3.09 16 27 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 28 C -0.13 -4.20 9.05 71.98 0.65 -3.55 16 29 C 0.12 4.27 5.42 86.37 0.47 4.73 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.84 6.79 -2.39 -0.02 0.83 16 33 H 0.08 1.36 8.05 -2.39 -0.02 1.34 16 34 H 0.05 1.27 6.40 -2.39 -0.02 1.25 16 35 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 36 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 37 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 38 H 0.12 2.65 8.06 -2.91 -0.02 2.63 16 39 H 0.12 2.27 5.18 -2.39 -0.01 2.26 16 40 H 0.11 2.27 7.85 -2.39 -0.02 2.25 16 41 H 0.05 1.88 7.74 -2.39 -0.02 1.86 16 42 H 0.11 2.29 5.93 -2.39 -0.01 2.27 16 43 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.07 2.13 8.14 -2.39 -0.02 2.12 16 45 H 0.37 18.82 5.92 -92.71 -0.55 18.28 16 46 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 47 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 48 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.04 1.50 7.54 -2.39 -0.02 1.48 16 50 H 0.05 1.85 6.64 -2.39 -0.02 1.84 16 51 H 0.08 2.75 7.00 -2.39 -0.02 2.73 16 Total: -1.00 -66.52 395.91 4.48 -62.04 By element: Atomic # 1 Polarization: 37.61 SS G_CDS: 0.36 Total: 37.97 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: 5.46 Total: -12.32 kcal Atomic # 7 Polarization: -109.34 SS G_CDS: -3.33 Total: -112.67 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.05 Total: -21.89 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -66.52 4.48 -62.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036080002.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.303 kcal (2) G-P(sol) polarization free energy of solvation -66.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds