Wall clock time and date at job start Tue Mar 31 2020 16:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50692 * 109.47227 * 2 1 4 4 C 1.38260 * 120.00625 * 265.02073 * 3 2 1 5 5 C 1.38206 * 120.00218 * 179.97438 * 4 3 2 6 6 C 1.38261 * 120.00450 * 359.97438 * 5 4 3 7 7 C 1.38216 * 119.99247 * 359.74275 * 6 5 4 8 8 C 1.38221 * 119.99758 * 85.00124 * 3 2 1 9 9 C 1.50697 * 119.99702 * 0.02562 * 8 3 2 10 10 C 1.50707 * 109.47153 * 85.00239 * 9 8 3 11 11 O 1.21282 * 119.99958 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00001 * 179.97438 * 10 9 8 13 13 C 1.46932 * 120.62957 * 0.02562 * 12 10 9 14 14 C 1.53196 * 108.77384 * 126.41061 * 13 12 10 15 15 C 1.53036 * 109.31536 * 54.63418 * 14 13 12 16 16 H 1.09007 * 109.46211 * 58.63452 * 15 14 13 17 17 N 1.46496 * 109.46261 * 178.61527 * 15 14 13 18 18 C 1.36945 * 119.99718 * 275.02605 * 17 15 14 19 19 H 1.07997 * 119.99756 * 359.97438 * 18 17 15 20 20 C 1.38805 * 119.99878 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 C 1.53048 * 109.52717 * 298.62666 * 15 14 13 27 27 H 1.09003 * 109.49569 * 301.42143 * 26 15 14 28 28 C 1.52995 * 109.49699 * 181.32227 * 26 15 14 29 29 C 1.46924 * 120.63215 * 180.02562 * 12 10 9 30 30 H 1.08997 * 109.46960 * 59.99995 * 1 2 3 31 31 H 1.09000 * 109.47197 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47249 * 299.99432 * 1 2 3 33 33 H 1.09001 * 109.47050 * 240.00064 * 2 1 3 34 34 H 1.08998 * 109.47019 * 120.00790 * 2 1 3 35 35 H 1.07998 * 119.99350 * 359.97438 * 4 3 2 36 36 H 1.08000 * 119.99954 * 179.97438 * 5 4 3 37 37 H 1.07995 * 120.00239 * 179.97438 * 6 5 4 38 38 H 1.08001 * 119.99698 * 180.27772 * 7 6 5 39 39 H 1.08990 * 109.47284 * 325.00140 * 9 8 3 40 40 H 1.09007 * 109.46868 * 204.99808 * 9 8 3 41 41 H 1.08990 * 109.58621 * 6.62184 * 13 12 10 42 42 H 1.09004 * 109.69937 * 246.26628 * 13 12 10 43 43 H 1.08996 * 109.49437 * 294.68012 * 14 13 12 44 44 H 1.09000 * 109.52019 * 174.60075 * 14 13 12 45 45 H 0.96996 * 120.00499 * 95.02336 * 17 15 14 46 46 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 47 47 H 1.09002 * 109.47271 * 60.00313 * 28 26 15 48 48 H 1.09001 * 109.46821 * 179.97438 * 28 26 15 49 49 H 1.08993 * 109.47267 * 299.99523 * 28 26 15 50 50 H 1.09005 * 109.58557 * 353.37400 * 29 12 10 51 51 H 1.08993 * 109.58628 * 113.65596 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3608 2.0380 -1.1928 5 6 2.8210 3.3412 -1.1927 6 6 2.9524 4.0279 0.0000 7 6 2.6185 3.4128 1.1919 8 6 2.1643 2.1070 1.1925 9 6 1.8065 1.4342 2.4926 10 6 2.9862 0.6375 2.9873 11 8 4.0160 0.6177 2.3470 12 7 2.8968 -0.0528 4.1414 13 6 1.6558 -0.0389 4.9279 14 6 1.2206 -1.4845 5.1879 15 6 2.3721 -2.2495 5.8442 16 1 2.6501 -1.7578 6.7766 17 7 1.9483 -3.6235 6.1245 18 6 1.2724 -3.9092 7.2808 19 1 1.0523 -3.1216 7.9862 20 6 0.8703 -5.2110 7.5461 21 7 1.1390 -6.1709 6.6866 22 14 -0.0510 -5.6007 9.1237 23 1 0.9208 -5.9471 10.1918 24 1 -0.8428 -4.4155 9.5402 25 1 -0.9633 -6.7495 8.8932 26 6 3.5765 -2.2701 4.9001 27 1 3.2923 -2.7393 3.9581 28 6 4.7160 -3.0631 5.5431 29 6 4.0385 -0.8337 4.6369 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.2577 1.5017 -2.1245 36 1 3.0779 3.8231 -2.1244 37 1 3.3124 5.0461 0.0001 38 1 2.7169 3.9507 2.1232 39 1 0.9583 0.7680 2.3355 40 1 1.5426 2.1902 3.2323 41 1 0.8769 0.4829 4.3721 42 1 1.8284 0.4673 5.8777 43 1 0.9589 -1.9611 4.2432 44 1 0.3552 -1.4908 5.8506 45 1 2.1463 -4.3310 5.4911 46 1 0.8584 -7.0807 6.8723 47 1 4.3859 -4.0845 5.7329 48 1 5.5733 -3.0779 4.8701 49 1 5.0004 -2.5924 6.4841 50 1 4.8315 -0.8363 3.8891 51 1 4.4097 -0.3917 5.5615 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036080003.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:43 Heat of formation + Delta-G solvation = -16.469967 kcal Electronic energy + Delta-G solvation = -28969.998911 eV Core-core repulsion = 25254.546043 eV Total energy + Delta-G solvation = -3715.452868 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.52532 -39.31805 -37.54547 -34.60841 -34.42864 -33.11685 -32.40728 -31.46473 -29.65206 -29.34262 -28.14124 -26.01179 -24.86727 -23.93183 -22.85112 -22.13362 -21.64965 -20.78715 -19.78737 -18.82027 -17.16850 -17.01247 -16.58500 -16.21511 -15.69402 -15.10776 -14.95120 -14.81592 -14.16083 -13.96772 -13.78213 -13.72781 -13.55232 -13.35744 -13.20482 -13.10811 -13.00642 -12.49528 -12.29224 -12.16883 -11.98134 -11.89412 -11.74433 -11.57988 -11.38549 -11.18394 -10.95674 -10.89846 -10.82679 -10.77967 -10.63937 -10.41621 -10.21818 -9.79468 -9.70468 -9.63379 -8.93366 -8.87540 -8.65618 -8.45419 -6.98900 -5.80011 -3.08758 1.24386 1.31983 2.71250 3.10656 3.40283 3.45592 3.47323 3.69579 4.50552 4.55148 4.62832 4.67998 4.78861 4.84286 5.01927 5.06797 5.09858 5.23941 5.25252 5.27383 5.30399 5.35640 5.38374 5.47566 5.51308 5.51844 5.60034 5.67817 5.76350 5.78923 5.85165 5.91449 5.96711 6.00988 6.07883 6.13818 6.14301 6.28697 6.37401 6.38678 6.40593 6.42495 6.52736 6.57856 6.63241 6.79732 6.90917 6.92547 7.03739 7.53531 7.66062 8.27896 8.38282 9.49696 10.07259 10.42016 11.42455 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020116 B = 0.002672 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.604050 B =10474.732234 C =10908.439882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.061 4.061 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.126 4.126 7 C -0.106 4.106 8 C -0.060 4.060 9 C -0.107 4.107 10 C 0.516 3.484 11 O -0.539 6.539 12 N -0.608 5.608 13 C 0.106 3.894 14 C -0.152 4.152 15 C 0.184 3.816 16 H 0.047 0.953 17 N -0.720 5.720 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.282 1.282 25 H -0.292 1.292 26 C -0.109 4.109 27 H 0.068 0.932 28 C -0.136 4.136 29 C 0.120 3.880 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.076 0.924 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.073 0.927 48 H 0.042 0.958 49 H 0.050 0.950 50 H 0.087 0.913 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.143 18.797 -12.504 22.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.061 4.061 4 C -0.137 4.137 5 C -0.138 4.138 6 C -0.144 4.144 7 C -0.124 4.124 8 C -0.060 4.060 9 C -0.146 4.146 10 C 0.304 3.696 11 O -0.416 6.416 12 N -0.341 5.341 13 C -0.018 4.018 14 C -0.193 4.193 15 C 0.074 3.926 16 H 0.065 0.935 17 N -0.361 5.361 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.736 3.264 23 H -0.218 1.218 24 H -0.208 1.208 25 H -0.218 1.218 26 C -0.129 4.129 27 H 0.087 0.913 28 C -0.194 4.194 29 C -0.002 4.002 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.218 0.782 46 H 0.065 0.935 47 H 0.092 0.908 48 H 0.061 0.939 49 H 0.069 0.931 50 H 0.105 0.895 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.598 18.753 -12.658 22.682 hybrid contribution -0.573 -0.525 0.765 1.090 sum 1.026 18.228 -11.893 21.789 Atomic orbital electron populations 1.21768 0.94571 1.02093 1.01996 1.20578 0.96070 0.92745 1.03298 1.19698 0.98077 0.95778 0.92594 1.20976 1.00180 0.95184 0.97344 1.21080 0.99949 0.94835 0.97953 1.21037 1.00914 0.99896 0.92577 1.20957 0.98846 0.94460 0.98119 1.19153 0.99772 0.93922 0.93190 1.20787 0.98031 1.00074 0.95746 1.20409 0.89251 0.79603 0.80303 1.90697 1.31303 1.63508 1.56137 1.48180 1.14976 1.48340 1.22575 1.21881 0.85205 0.99200 0.95476 1.22687 1.01602 0.93108 1.01925 1.20183 0.90144 0.87588 0.94681 0.93465 1.42410 1.67430 1.02958 1.23273 1.19207 1.27954 0.93018 0.96711 0.91256 1.24728 1.01784 0.95930 0.98434 1.69660 1.51861 1.00436 1.36068 0.86230 0.79380 0.77578 0.83221 1.21770 1.20814 1.21844 1.21732 0.97132 0.94117 0.99950 0.91315 1.21657 0.96466 1.01787 0.99481 1.21683 0.88390 0.90754 0.99399 0.92571 0.92033 0.92521 0.90991 0.90878 0.86258 0.86343 0.86298 0.86337 0.87673 0.88229 0.90556 0.91434 0.92183 0.90560 0.78224 0.93516 0.90763 0.93855 0.93075 0.89479 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.72 37.16 0.36 -0.99 16 2 C -0.09 -0.98 5.38 -27.89 -0.15 -1.13 16 3 C -0.06 -0.72 5.13 -104.62 -0.54 -1.26 16 4 C -0.12 -1.26 9.68 -39.58 -0.38 -1.65 16 5 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 6 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 7 C -0.11 -1.16 9.68 -39.58 -0.38 -1.54 16 8 C -0.06 -0.71 4.37 -104.62 -0.46 -1.17 16 9 C -0.11 -1.16 3.51 -29.03 -0.10 -1.27 16 10 C 0.52 7.29 6.90 -10.98 -0.08 7.21 16 11 O -0.54 -9.49 15.45 5.56 0.09 -9.40 16 12 N -0.61 -8.31 2.97 -172.78 -0.51 -8.82 16 13 C 0.11 1.30 6.34 -3.70 -0.02 1.27 16 14 C -0.15 -2.42 5.66 -26.61 -0.15 -2.57 16 15 C 0.18 3.39 2.19 -67.89 -0.15 3.24 16 16 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 17 N -0.72 -16.95 4.41 -53.38 -0.24 -17.19 16 18 C -0.24 -6.26 9.93 -15.06 -0.15 -6.41 16 19 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -27.40 13.06 55.49 0.72 -26.68 16 22 Si 0.90 21.80 29.55 -169.99 -5.02 16.77 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 C -0.11 -1.78 2.46 -90.51 -0.22 -2.00 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 28 C -0.14 -2.21 9.03 37.15 0.34 -1.88 16 29 C 0.12 1.75 5.71 -3.72 -0.02 1.73 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.50 6.80 -51.93 -0.35 0.15 16 33 H 0.07 0.74 8.05 -51.93 -0.42 0.32 16 34 H 0.07 0.93 6.42 -51.93 -0.33 0.59 16 35 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 37 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 39 H 0.11 1.04 5.17 -51.93 -0.27 0.77 16 40 H 0.10 0.86 7.85 -51.93 -0.41 0.46 16 41 H 0.08 0.75 5.93 -51.93 -0.31 0.44 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.38 9.81 7.50 -40.82 -0.31 9.50 16 46 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 47 H 0.07 1.41 7.36 -51.93 -0.38 1.03 16 48 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.09 1.34 7.01 -51.93 -0.36 0.98 16 51 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 399.87 15.07 6.03 6.03 Total: -1.00 -31.31 399.87 -10.54 -41.85 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -8.60 Total: 9.54 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -3.00 Total: -12.09 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.02 Total: -52.69 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.31 -10.54 -41.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036080003.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.376 kcal (2) G-P(sol) polarization free energy of solvation -31.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds