Wall clock time and date at job start Tue Mar 31 2020 16:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50692 * 109.47227 * 2 1 4 4 C 1.38260 * 120.00625 * 265.02073 * 3 2 1 5 5 C 1.38206 * 120.00218 * 179.97438 * 4 3 2 6 6 C 1.38261 * 120.00450 * 359.97438 * 5 4 3 7 7 C 1.38216 * 119.99247 * 359.74275 * 6 5 4 8 8 C 1.38221 * 119.99758 * 85.00124 * 3 2 1 9 9 C 1.50697 * 119.99702 * 0.02562 * 8 3 2 10 10 C 1.50707 * 109.47153 * 85.00239 * 9 8 3 11 11 O 1.21282 * 119.99958 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00001 * 179.97438 * 10 9 8 13 13 C 1.46932 * 120.62957 * 0.02562 * 12 10 9 14 14 C 1.53196 * 108.77384 * 126.41061 * 13 12 10 15 15 C 1.53036 * 109.31536 * 54.63418 * 14 13 12 16 16 H 1.09007 * 109.46211 * 58.63452 * 15 14 13 17 17 N 1.46496 * 109.46261 * 178.61527 * 15 14 13 18 18 C 1.36945 * 119.99718 * 275.02605 * 17 15 14 19 19 H 1.07997 * 119.99756 * 359.97438 * 18 17 15 20 20 C 1.38805 * 119.99878 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 C 1.53048 * 109.52717 * 298.62666 * 15 14 13 27 27 H 1.09003 * 109.49569 * 301.42143 * 26 15 14 28 28 C 1.52995 * 109.49699 * 181.32227 * 26 15 14 29 29 C 1.46924 * 120.63215 * 180.02562 * 12 10 9 30 30 H 1.08997 * 109.46960 * 59.99995 * 1 2 3 31 31 H 1.09000 * 109.47197 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47249 * 299.99432 * 1 2 3 33 33 H 1.09001 * 109.47050 * 240.00064 * 2 1 3 34 34 H 1.08998 * 109.47019 * 120.00790 * 2 1 3 35 35 H 1.07998 * 119.99350 * 359.97438 * 4 3 2 36 36 H 1.08000 * 119.99954 * 179.97438 * 5 4 3 37 37 H 1.07995 * 120.00239 * 179.97438 * 6 5 4 38 38 H 1.08001 * 119.99698 * 180.27772 * 7 6 5 39 39 H 1.08990 * 109.47284 * 325.00140 * 9 8 3 40 40 H 1.09007 * 109.46868 * 204.99808 * 9 8 3 41 41 H 1.08990 * 109.58621 * 6.62184 * 13 12 10 42 42 H 1.09004 * 109.69937 * 246.26628 * 13 12 10 43 43 H 1.08996 * 109.49437 * 294.68012 * 14 13 12 44 44 H 1.09000 * 109.52019 * 174.60075 * 14 13 12 45 45 H 0.96996 * 120.00499 * 95.02336 * 17 15 14 46 46 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 47 47 H 1.09002 * 109.47271 * 60.00313 * 28 26 15 48 48 H 1.09001 * 109.46821 * 179.97438 * 28 26 15 49 49 H 1.08993 * 109.47267 * 299.99523 * 28 26 15 50 50 H 1.09005 * 109.58557 * 353.37400 * 29 12 10 51 51 H 1.08993 * 109.58628 * 113.65596 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3608 2.0380 -1.1928 5 6 2.8210 3.3412 -1.1927 6 6 2.9524 4.0279 0.0000 7 6 2.6185 3.4128 1.1919 8 6 2.1643 2.1070 1.1925 9 6 1.8065 1.4342 2.4926 10 6 2.9862 0.6375 2.9873 11 8 4.0160 0.6177 2.3470 12 7 2.8968 -0.0528 4.1414 13 6 1.6558 -0.0389 4.9279 14 6 1.2206 -1.4845 5.1879 15 6 2.3721 -2.2495 5.8442 16 1 2.6501 -1.7578 6.7766 17 7 1.9483 -3.6235 6.1245 18 6 1.2724 -3.9092 7.2808 19 1 1.0523 -3.1216 7.9862 20 6 0.8703 -5.2110 7.5461 21 7 1.1390 -6.1709 6.6866 22 14 -0.0510 -5.6007 9.1237 23 1 0.9208 -5.9471 10.1918 24 1 -0.8428 -4.4155 9.5402 25 1 -0.9633 -6.7495 8.8932 26 6 3.5765 -2.2701 4.9001 27 1 3.2923 -2.7393 3.9581 28 6 4.7160 -3.0631 5.5431 29 6 4.0385 -0.8337 4.6369 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.2577 1.5017 -2.1245 36 1 3.0779 3.8231 -2.1244 37 1 3.3124 5.0461 0.0001 38 1 2.7169 3.9507 2.1232 39 1 0.9583 0.7680 2.3355 40 1 1.5426 2.1902 3.2323 41 1 0.8769 0.4829 4.3721 42 1 1.8284 0.4673 5.8777 43 1 0.9589 -1.9611 4.2432 44 1 0.3552 -1.4908 5.8506 45 1 2.1463 -4.3310 5.4911 46 1 0.8584 -7.0807 6.8723 47 1 4.3859 -4.0845 5.7329 48 1 5.5733 -3.0779 4.8701 49 1 5.0004 -2.5924 6.4841 50 1 4.8315 -0.8363 3.8891 51 1 4.4097 -0.3917 5.5615 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036080003.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:42 Heat of formation + Delta-G solvation = -32.499402 kcal Electronic energy + Delta-G solvation = -28970.693999 eV Core-core repulsion = 25254.546043 eV Total energy + Delta-G solvation = -3716.147957 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.55331 -40.27223 -38.83643 -36.14009 -35.23054 -34.52654 -33.46097 -32.95328 -31.01576 -30.39560 -29.09442 -27.26181 -26.44307 -24.75871 -24.33569 -23.09885 -22.90893 -21.68122 -21.07631 -19.96921 -19.01575 -18.17726 -17.43232 -17.09073 -16.74998 -16.69773 -15.97333 -15.84593 -15.67550 -15.44435 -15.00828 -14.83462 -14.64293 -14.42978 -14.27468 -14.05864 -13.94761 -13.86218 -13.56199 -13.13854 -12.99968 -12.97310 -12.85146 -12.78854 -12.74059 -12.64674 -12.44821 -12.15303 -12.13003 -12.02675 -11.83792 -11.68520 -11.64723 -11.54772 -11.13783 -10.94865 -10.77633 -9.66427 -9.62998 -9.45212 -8.94902 -7.89933 -5.17362 0.45422 0.54229 1.49403 1.50186 1.58218 1.63604 2.05165 2.58955 2.89242 3.43487 3.62203 3.70689 3.80223 3.86458 3.93116 4.02189 4.04953 4.10159 4.13025 4.31442 4.32968 4.35117 4.41418 4.47485 4.51810 4.52637 4.65092 4.68171 4.71343 4.76256 4.80028 4.82589 4.85491 4.99264 5.02556 5.03359 5.07459 5.15585 5.20686 5.25368 5.33561 5.37603 5.40857 5.52757 5.57931 5.61581 5.65232 5.66635 5.78010 6.17012 6.31512 6.45451 7.19128 7.38048 8.14546 8.37435 9.33726 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020116 B = 0.002672 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.604050 B =10474.732234 C =10908.439882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.079 4.079 4 C -0.132 4.132 5 C -0.125 4.125 6 C -0.133 4.133 7 C -0.118 4.118 8 C -0.079 4.079 9 C -0.101 4.101 10 C 0.516 3.484 11 O -0.578 6.578 12 N -0.608 5.608 13 C 0.113 3.887 14 C -0.143 4.143 15 C 0.180 3.820 16 H 0.048 0.952 17 N -0.732 5.732 18 C -0.227 4.227 19 H 0.079 0.921 20 C -0.078 4.078 21 N -0.972 5.972 22 Si 0.967 3.033 23 H -0.291 1.291 24 H -0.267 1.267 25 H -0.301 1.301 26 C -0.099 4.099 27 H 0.050 0.950 28 C -0.130 4.130 29 C 0.127 3.873 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.132 0.868 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.133 0.867 39 H 0.115 0.885 40 H 0.128 0.872 41 H 0.109 0.891 42 H 0.088 0.912 43 H 0.045 0.955 44 H 0.068 0.932 45 H 0.370 0.630 46 H 0.248 0.752 47 H 0.040 0.960 48 H 0.061 0.939 49 H 0.058 0.942 50 H 0.078 0.922 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.556 21.756 -12.300 24.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 C -0.079 4.079 4 C -0.150 4.150 5 C -0.143 4.143 6 C -0.151 4.151 7 C -0.136 4.136 8 C -0.079 4.079 9 C -0.140 4.140 10 C 0.306 3.694 11 O -0.458 6.458 12 N -0.341 5.341 13 C -0.010 4.010 14 C -0.184 4.184 15 C 0.071 3.929 16 H 0.066 0.934 17 N -0.371 5.371 18 C -0.359 4.359 19 H 0.096 0.904 20 C -0.270 4.270 21 N -0.623 5.623 22 Si 0.797 3.203 23 H -0.219 1.219 24 H -0.192 1.192 25 H -0.228 1.228 26 C -0.119 4.119 27 H 0.069 0.931 28 C -0.188 4.188 29 C 0.004 3.996 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.149 0.851 36 H 0.159 0.841 37 H 0.159 0.841 38 H 0.151 0.849 39 H 0.133 0.867 40 H 0.146 0.854 41 H 0.127 0.873 42 H 0.106 0.894 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.201 0.799 46 H 0.057 0.943 47 H 0.059 0.941 48 H 0.080 0.920 49 H 0.077 0.923 50 H 0.097 0.903 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.000 21.779 -12.441 25.102 hybrid contribution -0.311 -1.377 0.630 1.546 sum 0.689 20.402 -11.810 23.584 Atomic orbital electron populations 1.21737 0.93274 1.02303 1.02638 1.20534 0.97197 0.92523 1.02184 1.19886 0.98778 0.96005 0.93273 1.21238 1.00289 0.95873 0.97633 1.21419 0.99171 0.94602 0.99075 1.21387 1.00382 1.00990 0.92352 1.21249 0.98674 0.94405 0.99230 1.19337 1.00621 0.94541 0.93434 1.20817 0.96566 1.00423 0.96182 1.20967 0.89610 0.79241 0.79589 1.90678 1.33108 1.64902 1.57085 1.48246 1.15067 1.47988 1.22765 1.21940 0.85376 0.96763 0.96884 1.22475 1.00019 0.95279 1.00615 1.20422 0.91747 0.85300 0.95405 0.93408 1.42602 1.67341 1.04794 1.22348 1.19594 1.26174 0.93001 0.97170 0.90361 1.25484 1.03833 0.96158 1.01513 1.69824 1.54015 1.00407 1.38079 0.85228 0.78035 0.77335 0.79723 1.21874 1.19151 1.22807 1.21593 0.96333 0.95542 0.98439 0.93142 1.21575 0.97070 0.99781 1.00385 1.21529 0.88626 0.89509 0.99904 0.91734 0.92004 0.92044 0.91021 0.93045 0.85059 0.84097 0.84078 0.84862 0.86743 0.85369 0.87274 0.89420 0.93594 0.91300 0.79877 0.94336 0.94098 0.91992 0.92272 0.90332 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.72 71.98 0.70 -1.77 16 2 C -0.09 -1.87 5.38 29.85 0.16 -1.71 16 3 C -0.08 -1.78 5.13 -19.87 -0.10 -1.88 16 4 C -0.13 -2.66 9.68 22.27 0.22 -2.44 16 5 C -0.12 -2.22 10.05 22.27 0.22 -1.99 16 6 C -0.13 -2.37 10.05 22.27 0.22 -2.14 16 7 C -0.12 -2.32 9.68 22.27 0.22 -2.11 16 8 C -0.08 -1.73 4.37 -19.87 -0.09 -1.82 16 9 C -0.10 -1.96 3.51 29.10 0.10 -1.85 16 10 C 0.52 13.74 6.90 87.66 0.60 14.35 16 11 O -0.58 -20.00 15.45 -3.04 -0.05 -20.04 16 12 N -0.61 -15.42 2.97 -818.93 -2.43 -17.86 16 13 C 0.11 2.43 6.34 86.36 0.55 2.97 16 14 C -0.14 -4.36 5.66 30.67 0.17 -4.19 16 15 C 0.18 6.51 2.19 45.02 0.10 6.61 16 16 H 0.05 1.74 8.08 -2.38 -0.02 1.72 16 17 N -0.73 -34.96 4.41 -322.81 -1.42 -36.39 16 18 C -0.23 -11.98 9.93 84.03 0.83 -11.15 16 19 H 0.08 3.92 7.83 -2.91 -0.02 3.89 16 20 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 21 N -0.97 -58.77 13.06 21.65 0.28 -58.49 16 22 Si 0.97 45.13 29.55 68.60 2.03 47.16 16 23 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 26 C -0.10 -3.22 2.46 -10.72 -0.03 -3.24 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 C -0.13 -4.25 9.03 71.98 0.65 -3.60 16 29 C 0.13 3.54 5.71 86.36 0.49 4.03 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 0.99 6.80 -2.39 -0.02 0.97 16 33 H 0.07 1.48 8.05 -2.39 -0.02 1.46 16 34 H 0.05 1.31 6.42 -2.39 -0.02 1.30 16 35 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 36 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16 37 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 38 H 0.13 2.11 8.06 -2.91 -0.02 2.08 16 39 H 0.11 2.00 5.17 -2.39 -0.01 1.99 16 40 H 0.13 1.72 7.85 -2.38 -0.02 1.70 16 41 H 0.11 1.70 5.93 -2.39 -0.01 1.68 16 42 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 43 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.37 19.61 7.50 -92.71 -0.70 18.91 16 46 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 47 H 0.04 1.60 7.36 -2.39 -0.02 1.58 16 48 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 49 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 50 H 0.08 2.37 7.01 -2.38 -0.02 2.35 16 51 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -69.13 399.87 4.11 -65.01 By element: Atomic # 1 Polarization: 36.23 SS G_CDS: 0.21 Total: 36.44 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: 5.49 Total: -15.84 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -3.57 Total: -112.74 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.05 Total: -20.04 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -69.13 4.11 -65.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036080003.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.515 kcal (2) G-P(sol) polarization free energy of solvation -69.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds