Wall clock time and date at job start Tue Mar 31 2020 16:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50709 * 109.47345 * 2 1 4 4 C 1.38255 * 119.99490 * 265.02171 * 3 2 1 5 5 C 1.38221 * 119.99704 * 179.97438 * 4 3 2 6 6 C 1.38250 * 120.00088 * 0.02562 * 5 4 3 7 7 C 1.38224 * 119.99898 * 359.70814 * 6 5 4 8 8 C 1.38204 * 119.99947 * 84.99327 * 3 2 1 9 9 C 1.50700 * 120.00590 * 0.02562 * 8 3 2 10 10 C 1.50699 * 109.47273 * 84.99328 * 9 8 3 11 11 O 1.21280 * 119.99808 * 0.02562 * 10 9 8 12 12 N 1.34772 * 119.99949 * 179.97438 * 10 9 8 13 13 C 1.46923 * 120.63343 * 0.03442 * 12 10 9 14 14 C 1.53195 * 108.77575 * 233.58368 * 13 12 10 15 15 C 1.53046 * 109.30793 * 305.36150 * 14 13 12 16 16 H 1.08998 * 109.45610 * 181.38442 * 15 14 13 17 17 N 1.46496 * 109.46123 * 301.35926 * 15 14 13 18 18 C 1.36949 * 119.99616 * 275.00303 * 17 15 14 19 19 H 1.07999 * 119.99880 * 359.97438 * 18 17 15 20 20 C 1.38805 * 119.99695 * 179.97438 * 18 17 15 21 21 N 1.31620 * 119.99958 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00298 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.47285 * 89.99991 * 22 20 18 24 24 H 1.48502 * 109.47443 * 209.99833 * 22 20 18 25 25 H 1.48503 * 109.47224 * 330.00176 * 22 20 18 26 26 C 1.53043 * 109.53700 * 61.36640 * 15 14 13 27 27 H 1.08998 * 109.49941 * 58.61981 * 26 15 14 28 28 C 1.53004 * 109.49393 * 178.68072 * 26 15 14 29 29 C 1.46931 * 120.62926 * 180.02562 * 12 10 9 30 30 H 1.08998 * 109.46918 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47417 * 300.00885 * 1 2 3 32 32 H 1.09002 * 109.46500 * 60.00477 * 1 2 3 33 33 H 1.08997 * 109.47768 * 239.99513 * 2 1 3 34 34 H 1.08999 * 109.46953 * 119.99312 * 2 1 3 35 35 H 1.08004 * 120.00320 * 359.97438 * 4 3 2 36 36 H 1.07996 * 119.99795 * 180.02562 * 5 4 3 37 37 H 1.07996 * 120.00378 * 179.97438 * 6 5 4 38 38 H 1.07994 * 119.99857 * 180.29157 * 7 6 5 39 39 H 1.09002 * 109.46687 * 324.99597 * 9 8 3 40 40 H 1.09001 * 109.47348 * 205.00101 * 9 8 3 41 41 H 1.08996 * 109.59375 * 113.79430 * 13 12 10 42 42 H 1.09006 * 109.58686 * 353.36430 * 13 12 10 43 43 H 1.08990 * 109.49959 * 185.41234 * 14 13 12 44 44 H 1.08999 * 109.49609 * 65.30943 * 14 13 12 45 45 H 0.96998 * 120.00391 * 94.99746 * 17 15 14 46 46 H 0.96996 * 120.00018 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.46682 * 60.00080 * 28 26 15 48 48 H 1.08999 * 109.46678 * 179.97438 * 28 26 15 49 49 H 1.08991 * 109.47219 * 299.99834 * 28 26 15 50 50 H 1.09001 * 109.58511 * 6.62918 * 29 12 10 51 51 H 1.08996 * 109.70113 * 246.27382 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3608 2.0379 -1.1929 5 6 2.8210 3.3412 -1.1930 6 6 2.9536 4.0276 -0.0002 7 6 2.6200 3.4125 1.1918 8 6 2.1643 2.1072 1.1923 9 6 1.8063 1.4347 2.4926 10 6 2.9858 0.6379 2.9875 11 8 4.0159 0.6185 2.3476 12 7 2.8963 -0.0522 4.1416 13 6 1.6553 -0.0381 4.9280 14 6 1.9860 0.3823 6.3635 15 6 3.0738 -0.5378 6.9224 16 1 3.2936 -0.2563 7.9523 17 7 2.6060 -1.9255 6.8849 18 6 1.8450 -2.4195 7.9107 19 1 1.5900 -1.7861 8.7474 20 6 1.4013 -3.7343 7.8749 21 7 0.6703 -4.2092 8.8610 22 14 1.8417 -4.8296 6.4272 23 1 3.1207 -5.5302 6.7076 24 1 0.7647 -5.8304 6.2180 25 1 1.9899 -3.9990 5.2051 26 6 4.3417 -0.4043 6.0758 27 1 4.6768 0.6329 6.0834 28 6 5.4390 -1.2997 6.6548 29 6 4.0379 -0.8332 4.6373 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8898 32 1 -0.3632 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 2.2576 1.5015 -2.1246 36 1 3.0772 3.8233 -2.1248 37 1 3.3136 5.0458 -0.0002 38 1 2.7191 3.9503 2.1231 39 1 0.9580 0.7685 2.3355 40 1 1.5424 2.1907 3.2321 41 1 1.2135 -1.0345 4.9317 42 1 0.9541 0.6731 4.4914 43 1 1.0911 0.3043 6.9808 44 1 2.3429 1.4122 6.3679 45 1 2.8353 -2.4945 6.1335 46 1 0.3599 -5.1278 8.8358 47 1 5.1038 -2.3369 6.6459 48 1 6.3416 -1.2047 6.0513 49 1 5.6529 -0.9958 7.6794 50 1 4.9087 -0.6466 4.0088 51 1 3.7932 -1.8951 4.6168 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036080005.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:46 Heat of formation + Delta-G solvation = -9.911798 kcal Electronic energy + Delta-G solvation = -29433.803936 eV Core-core repulsion = 25718.635451 eV Total energy + Delta-G solvation = -3715.168485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.53463 -39.39234 -37.71138 -34.46699 -34.38288 -33.12088 -32.44350 -31.52098 -29.78076 -29.64628 -28.18777 -26.10710 -24.95352 -23.93049 -23.18528 -22.17492 -21.69871 -20.80970 -19.53968 -18.24095 -17.89547 -16.98295 -16.55525 -16.22443 -15.68085 -15.11737 -15.00264 -14.67948 -14.43391 -14.01489 -13.85057 -13.66718 -13.64077 -13.45200 -13.36067 -13.10311 -12.87755 -12.62368 -12.35979 -12.26829 -12.01076 -11.91535 -11.70678 -11.61472 -11.47263 -11.35519 -11.02763 -10.96795 -10.90747 -10.79277 -10.62589 -10.56267 -10.24685 -9.87710 -9.69093 -9.58785 -8.99527 -8.87054 -8.65517 -8.35512 -7.31853 -5.82337 -3.17675 1.24923 1.32184 2.75056 3.15398 3.30851 3.34337 3.41005 3.70608 4.51722 4.53113 4.62418 4.71286 4.78384 4.84625 5.01339 5.07292 5.09654 5.13875 5.21295 5.23121 5.29555 5.33333 5.38264 5.46073 5.48798 5.51825 5.57800 5.62415 5.73246 5.76359 5.80722 5.86012 5.90532 5.92246 6.00752 6.06186 6.11325 6.19382 6.27582 6.35897 6.38449 6.40821 6.46358 6.54363 6.57873 6.64106 6.72813 6.86976 6.92532 7.60349 7.94185 8.31748 8.36910 9.15083 9.87728 10.07595 11.36105 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016448 B = 0.003322 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.926441 B = 8427.403835 C = 9158.996117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.063 4.063 4 C -0.119 4.119 5 C -0.121 4.121 6 C -0.126 4.126 7 C -0.105 4.105 8 C -0.058 4.058 9 C -0.107 4.107 10 C 0.516 3.484 11 O -0.542 6.542 12 N -0.605 5.605 13 C 0.111 3.889 14 C -0.150 4.150 15 C 0.185 3.815 16 H 0.060 0.940 17 N -0.744 5.744 18 C -0.240 4.240 19 H 0.091 0.909 20 C 0.007 3.993 21 N -0.933 5.933 22 Si 0.878 3.122 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.279 1.279 26 C -0.112 4.112 27 H 0.071 0.929 28 C -0.138 4.138 29 C 0.118 3.882 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.052 0.948 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.064 0.936 48 H 0.046 0.954 49 H 0.058 0.942 50 H 0.086 0.914 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.170 14.540 -16.932 22.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 C -0.063 4.063 4 C -0.137 4.137 5 C -0.139 4.139 6 C -0.144 4.144 7 C -0.123 4.123 8 C -0.059 4.059 9 C -0.146 4.146 10 C 0.304 3.696 11 O -0.420 6.420 12 N -0.338 5.338 13 C -0.012 4.012 14 C -0.191 4.191 15 C 0.075 3.925 16 H 0.078 0.922 17 N -0.387 5.387 18 C -0.370 4.370 19 H 0.108 0.892 20 C -0.189 4.189 21 N -0.581 5.581 22 Si 0.709 3.291 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.205 1.205 26 C -0.132 4.132 27 H 0.089 0.911 28 C -0.196 4.196 29 C -0.004 4.004 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.071 0.929 45 H 0.194 0.806 46 H 0.069 0.931 47 H 0.083 0.917 48 H 0.065 0.935 49 H 0.077 0.923 50 H 0.104 0.896 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.576 14.467 -17.041 22.502 hybrid contribution 0.150 -0.914 -0.850 1.257 sum 2.725 13.553 -17.891 22.609 Atomic orbital electron populations 1.21771 0.94594 1.01978 1.02111 1.20574 0.96055 0.92855 1.03171 1.19677 0.98256 0.95733 0.92626 1.20966 1.00259 0.95202 0.97287 1.21077 1.00007 0.94833 0.97952 1.21043 1.00853 0.99906 0.92565 1.20973 0.98720 0.94465 0.98152 1.19158 0.99620 0.93926 0.93177 1.20784 0.97981 1.00150 0.95709 1.20397 0.89243 0.79470 0.80532 1.90687 1.31241 1.63641 1.56410 1.48162 1.15049 1.48446 1.22149 1.21770 0.84810 1.02760 0.91826 1.22502 1.02291 0.98823 0.95478 1.20178 0.89906 0.85473 0.96936 0.92199 1.42848 1.63370 1.08195 1.24325 1.19053 1.23547 0.95615 0.98805 0.89166 1.24634 0.99988 0.96910 0.97377 1.69687 1.40461 1.15792 1.32152 0.86668 0.77983 0.81240 0.83244 1.21053 1.21759 1.20509 1.21746 0.97046 0.99831 0.94529 0.91092 1.21675 0.96747 1.00755 1.00425 1.21603 0.89123 0.94893 0.94797 0.92167 0.92438 0.92516 0.91048 0.90975 0.86305 0.86347 0.86273 0.86276 0.87819 0.88086 0.90162 0.90861 0.90187 0.92918 0.80589 0.93059 0.91731 0.93538 0.92296 0.89569 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.72 37.16 0.36 -0.98 16 2 C -0.09 -0.97 5.38 -27.88 -0.15 -1.12 16 3 C -0.06 -0.75 5.13 -104.62 -0.54 -1.28 16 4 C -0.12 -1.28 9.68 -39.58 -0.38 -1.67 16 5 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 6 C -0.13 -1.30 10.05 -39.58 -0.40 -1.69 16 7 C -0.11 -1.19 9.68 -39.58 -0.38 -1.58 16 8 C -0.06 -0.71 4.37 -104.63 -0.46 -1.17 16 9 C -0.11 -1.23 3.51 -29.04 -0.10 -1.34 16 10 C 0.52 7.67 6.90 -10.99 -0.08 7.60 16 11 O -0.54 -9.80 15.45 5.56 0.09 -9.72 16 12 N -0.61 -9.04 2.97 -172.79 -0.51 -9.55 16 13 C 0.11 1.58 6.08 -3.71 -0.02 1.56 16 14 C -0.15 -2.28 5.78 -26.61 -0.15 -2.43 16 15 C 0.18 3.22 2.53 -67.89 -0.17 3.05 16 16 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 17 N -0.74 -15.88 3.44 -53.38 -0.18 -16.07 16 18 C -0.24 -6.27 10.41 -15.06 -0.16 -6.43 16 19 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 20 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 21 N -0.93 -28.27 13.97 55.49 0.78 -27.49 16 22 Si 0.88 21.33 27.73 -169.99 -4.71 16.61 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 26 C -0.11 -1.70 2.67 -90.52 -0.24 -1.94 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 28 C -0.14 -2.06 9.05 37.16 0.34 -1.72 16 29 C 0.12 1.87 5.41 -3.73 -0.02 1.85 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.51 6.80 -51.93 -0.35 0.16 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.72 8.05 -51.93 -0.42 0.30 16 34 H 0.07 0.91 6.42 -51.93 -0.33 0.58 16 35 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 36 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.10 1.08 5.43 -51.93 -0.28 0.80 16 40 H 0.10 0.98 7.60 -51.93 -0.39 0.58 16 41 H 0.08 1.34 7.74 -51.93 -0.40 0.94 16 42 H 0.07 0.83 5.93 -51.93 -0.31 0.52 16 43 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.36 7.77 3.79 -40.82 -0.15 7.62 16 46 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 47 H 0.06 1.08 7.54 -51.93 -0.39 0.69 16 48 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.09 1.39 7.01 -51.93 -0.36 1.02 16 51 H 0.07 1.12 6.64 -51.93 -0.35 0.77 16 LS Contribution 392.82 15.07 5.92 5.92 Total: -1.00 -31.51 392.82 -10.09 -41.59 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -8.41 Total: 9.52 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -3.05 Total: -10.81 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: 0.08 Total: -53.12 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.71 Total: 16.61 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.51 -10.09 -41.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036080005.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.681 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds