Wall clock time and date at job start Tue Mar 31 2020 16:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50709 * 109.47345 * 2 1 4 4 C 1.38255 * 119.99490 * 265.02171 * 3 2 1 5 5 C 1.38221 * 119.99704 * 179.97438 * 4 3 2 6 6 C 1.38250 * 120.00088 * 0.02562 * 5 4 3 7 7 C 1.38224 * 119.99898 * 359.70814 * 6 5 4 8 8 C 1.38204 * 119.99947 * 84.99327 * 3 2 1 9 9 C 1.50700 * 120.00590 * 0.02562 * 8 3 2 10 10 C 1.50699 * 109.47273 * 84.99328 * 9 8 3 11 11 O 1.21280 * 119.99808 * 0.02562 * 10 9 8 12 12 N 1.34772 * 119.99949 * 179.97438 * 10 9 8 13 13 C 1.46923 * 120.63343 * 0.03442 * 12 10 9 14 14 C 1.53195 * 108.77575 * 233.58368 * 13 12 10 15 15 C 1.53046 * 109.30793 * 305.36150 * 14 13 12 16 16 H 1.08998 * 109.45610 * 181.38442 * 15 14 13 17 17 N 1.46496 * 109.46123 * 301.35926 * 15 14 13 18 18 C 1.36949 * 119.99616 * 275.00303 * 17 15 14 19 19 H 1.07999 * 119.99880 * 359.97438 * 18 17 15 20 20 C 1.38805 * 119.99695 * 179.97438 * 18 17 15 21 21 N 1.31620 * 119.99958 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00298 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.47285 * 89.99991 * 22 20 18 24 24 H 1.48502 * 109.47443 * 209.99833 * 22 20 18 25 25 H 1.48503 * 109.47224 * 330.00176 * 22 20 18 26 26 C 1.53043 * 109.53700 * 61.36640 * 15 14 13 27 27 H 1.08998 * 109.49941 * 58.61981 * 26 15 14 28 28 C 1.53004 * 109.49393 * 178.68072 * 26 15 14 29 29 C 1.46931 * 120.62926 * 180.02562 * 12 10 9 30 30 H 1.08998 * 109.46918 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47417 * 300.00885 * 1 2 3 32 32 H 1.09002 * 109.46500 * 60.00477 * 1 2 3 33 33 H 1.08997 * 109.47768 * 239.99513 * 2 1 3 34 34 H 1.08999 * 109.46953 * 119.99312 * 2 1 3 35 35 H 1.08004 * 120.00320 * 359.97438 * 4 3 2 36 36 H 1.07996 * 119.99795 * 180.02562 * 5 4 3 37 37 H 1.07996 * 120.00378 * 179.97438 * 6 5 4 38 38 H 1.07994 * 119.99857 * 180.29157 * 7 6 5 39 39 H 1.09002 * 109.46687 * 324.99597 * 9 8 3 40 40 H 1.09001 * 109.47348 * 205.00101 * 9 8 3 41 41 H 1.08996 * 109.59375 * 113.79430 * 13 12 10 42 42 H 1.09006 * 109.58686 * 353.36430 * 13 12 10 43 43 H 1.08990 * 109.49959 * 185.41234 * 14 13 12 44 44 H 1.08999 * 109.49609 * 65.30943 * 14 13 12 45 45 H 0.96998 * 120.00391 * 94.99746 * 17 15 14 46 46 H 0.96996 * 120.00018 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.46682 * 60.00080 * 28 26 15 48 48 H 1.08999 * 109.46678 * 179.97438 * 28 26 15 49 49 H 1.08991 * 109.47219 * 299.99834 * 28 26 15 50 50 H 1.09001 * 109.58511 * 6.62918 * 29 12 10 51 51 H 1.08996 * 109.70113 * 246.27382 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3608 2.0379 -1.1929 5 6 2.8210 3.3412 -1.1930 6 6 2.9536 4.0276 -0.0002 7 6 2.6200 3.4125 1.1918 8 6 2.1643 2.1072 1.1923 9 6 1.8063 1.4347 2.4926 10 6 2.9858 0.6379 2.9875 11 8 4.0159 0.6185 2.3476 12 7 2.8963 -0.0522 4.1416 13 6 1.6553 -0.0381 4.9280 14 6 1.9860 0.3823 6.3635 15 6 3.0738 -0.5378 6.9224 16 1 3.2936 -0.2563 7.9523 17 7 2.6060 -1.9255 6.8849 18 6 1.8450 -2.4195 7.9107 19 1 1.5900 -1.7861 8.7474 20 6 1.4013 -3.7343 7.8749 21 7 0.6703 -4.2092 8.8610 22 14 1.8417 -4.8296 6.4272 23 1 3.1207 -5.5302 6.7076 24 1 0.7647 -5.8304 6.2180 25 1 1.9899 -3.9990 5.2051 26 6 4.3417 -0.4043 6.0758 27 1 4.6768 0.6329 6.0834 28 6 5.4390 -1.2997 6.6548 29 6 4.0379 -0.8332 4.6373 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8898 32 1 -0.3632 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 2.2576 1.5015 -2.1246 36 1 3.0772 3.8233 -2.1248 37 1 3.3136 5.0458 -0.0002 38 1 2.7191 3.9503 2.1231 39 1 0.9580 0.7685 2.3355 40 1 1.5424 2.1907 3.2321 41 1 1.2135 -1.0345 4.9317 42 1 0.9541 0.6731 4.4914 43 1 1.0911 0.3043 6.9808 44 1 2.3429 1.4122 6.3679 45 1 2.8353 -2.4945 6.1335 46 1 0.3599 -5.1278 8.8358 47 1 5.1038 -2.3369 6.6459 48 1 6.3416 -1.2047 6.0513 49 1 5.6529 -0.9958 7.6794 50 1 4.9087 -0.6466 4.0088 51 1 3.7932 -1.8951 4.6168 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036080005.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:45 Heat of formation + Delta-G solvation = -26.073400 kcal Electronic energy + Delta-G solvation = -29434.504755 eV Core-core repulsion = 25718.635451 eV Total energy + Delta-G solvation = -3715.869304 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.62403 -40.37320 -38.98356 -35.93106 -35.23917 -34.57542 -33.50078 -33.04727 -31.44619 -30.41476 -29.13169 -27.35660 -26.26913 -24.97615 -24.69426 -23.06798 -22.96688 -21.67621 -20.71726 -19.86437 -19.50408 -18.16638 -17.42654 -17.15779 -16.74441 -16.59223 -16.19031 -15.94527 -15.70115 -15.44880 -15.08096 -14.84700 -14.67120 -14.48611 -14.41511 -14.32340 -13.95646 -13.83853 -13.65367 -13.31947 -13.15710 -12.99713 -12.86996 -12.83098 -12.72277 -12.64598 -12.47642 -12.15187 -12.05682 -11.97231 -11.93186 -11.68991 -11.67270 -11.56217 -11.20212 -10.98319 -10.81668 -9.67370 -9.63219 -9.46504 -9.23072 -7.98116 -5.28738 0.44319 0.53148 1.35990 1.37976 1.44636 1.61608 2.02238 2.49022 2.88009 3.34209 3.59916 3.62045 3.68321 3.84971 3.91401 3.98399 4.00075 4.03860 4.08769 4.26970 4.30558 4.33040 4.34875 4.44991 4.49825 4.51599 4.60794 4.64812 4.68829 4.70400 4.75382 4.79977 4.94730 5.00412 5.01580 5.05599 5.11957 5.14146 5.19304 5.24018 5.26469 5.29095 5.36662 5.42545 5.60079 5.62966 5.64629 5.76761 5.84838 6.15948 6.26224 6.44730 7.12876 7.16384 7.89922 8.07957 9.23872 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016448 B = 0.003322 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.926441 B = 8427.403835 C = 9158.996117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.080 4.080 4 C -0.131 4.131 5 C -0.125 4.125 6 C -0.133 4.133 7 C -0.118 4.118 8 C -0.078 4.078 9 C -0.101 4.101 10 C 0.517 3.483 11 O -0.576 6.576 12 N -0.605 5.605 13 C 0.114 3.886 14 C -0.143 4.143 15 C 0.177 3.823 16 H 0.050 0.950 17 N -0.742 5.742 18 C -0.210 4.210 19 H 0.063 0.937 20 C -0.060 4.060 21 N -0.984 5.984 22 Si 0.939 3.061 23 H -0.284 1.284 24 H -0.300 1.300 25 H -0.258 1.258 26 C -0.100 4.100 27 H 0.089 0.911 28 C -0.136 4.136 29 C 0.120 3.880 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.051 0.949 35 H 0.133 0.867 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.131 0.869 39 H 0.115 0.885 40 H 0.125 0.875 41 H 0.056 0.944 42 H 0.109 0.891 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.361 0.639 46 H 0.255 0.745 47 H 0.041 0.959 48 H 0.066 0.934 49 H 0.060 0.940 50 H 0.084 0.916 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.624 16.616 -19.093 25.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 C -0.080 4.080 4 C -0.149 4.149 5 C -0.142 4.142 6 C -0.151 4.151 7 C -0.136 4.136 8 C -0.078 4.078 9 C -0.140 4.140 10 C 0.307 3.693 11 O -0.456 6.456 12 N -0.337 5.337 13 C -0.008 4.008 14 C -0.184 4.184 15 C 0.069 3.931 16 H 0.068 0.932 17 N -0.386 5.386 18 C -0.341 4.341 19 H 0.081 0.919 20 C -0.251 4.251 21 N -0.636 5.636 22 Si 0.768 3.232 23 H -0.211 1.211 24 H -0.227 1.227 25 H -0.183 1.183 26 C -0.120 4.120 27 H 0.108 0.892 28 C -0.194 4.194 29 C -0.003 4.003 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.151 0.849 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.149 0.851 39 H 0.133 0.867 40 H 0.143 0.857 41 H 0.074 0.926 42 H 0.127 0.873 43 H 0.085 0.915 44 H 0.099 0.901 45 H 0.196 0.804 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.085 0.915 49 H 0.079 0.921 50 H 0.103 0.897 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.051 16.598 -19.229 25.584 hybrid contribution 0.077 -1.429 -0.178 1.442 sum 3.129 15.169 -19.407 24.830 Atomic orbital electron populations 1.21744 0.93277 1.02394 1.02597 1.20545 0.97192 0.92447 1.02253 1.19891 0.98798 0.96109 0.93184 1.21246 1.00211 0.95827 0.97634 1.21426 0.99151 0.94647 0.99019 1.21383 1.00388 1.00984 0.92355 1.21244 0.98723 0.94466 0.99203 1.19313 1.00630 0.94520 0.93376 1.20808 0.96603 1.00405 0.96182 1.20941 0.89656 0.78965 0.79745 1.90669 1.32898 1.64818 1.57210 1.48200 1.14851 1.48287 1.22400 1.21760 0.85086 1.02442 0.91475 1.22374 1.00705 0.99659 0.95615 1.20421 0.91785 0.83676 0.97257 0.93240 1.42816 1.62742 1.10011 1.23063 1.19002 1.21815 0.94822 0.98492 0.91947 1.25284 1.01130 0.98618 1.00056 1.69851 1.43091 1.15984 1.34670 0.85657 0.77088 0.79364 0.81069 1.21076 1.22694 1.18260 1.21652 0.95798 1.00923 0.93607 0.89224 1.21659 0.97489 0.99239 1.01050 1.21502 0.89579 0.94242 0.94997 0.91765 0.92247 0.91712 0.90765 0.93043 0.84870 0.84022 0.84132 0.85097 0.86743 0.85722 0.92588 0.87276 0.91515 0.90108 0.80445 0.93632 0.93938 0.91453 0.92071 0.89747 0.93236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.72 71.98 0.70 -1.66 16 2 C -0.09 -1.80 5.38 29.85 0.16 -1.64 16 3 C -0.08 -1.77 5.13 -19.87 -0.10 -1.88 16 4 C -0.13 -2.59 9.68 22.27 0.22 -2.37 16 5 C -0.12 -2.21 10.05 22.27 0.22 -1.98 16 6 C -0.13 -2.42 10.05 22.27 0.22 -2.19 16 7 C -0.12 -2.42 9.68 22.27 0.22 -2.21 16 8 C -0.08 -1.75 4.37 -19.87 -0.09 -1.84 16 9 C -0.10 -2.08 3.51 29.10 0.10 -1.98 16 10 C 0.52 14.37 6.90 87.66 0.60 14.98 16 11 O -0.58 -20.11 15.45 -3.03 -0.05 -20.16 16 12 N -0.61 -16.83 2.97 -818.99 -2.43 -19.27 16 13 C 0.11 3.01 6.08 86.36 0.53 3.54 16 14 C -0.14 -4.04 5.78 30.67 0.18 -3.86 16 15 C 0.18 5.94 2.53 45.02 0.11 6.05 16 16 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 17 N -0.74 -31.39 3.44 -322.80 -1.11 -32.50 16 18 C -0.21 -11.11 10.41 84.03 0.87 -10.23 16 19 H 0.06 3.62 8.06 -2.91 -0.02 3.59 16 20 C -0.06 -3.38 5.50 84.86 0.47 -2.91 16 21 N -0.98 -61.42 13.97 21.65 0.30 -61.11 16 22 Si 0.94 44.65 27.73 68.60 1.90 46.56 16 23 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 24 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 25 H -0.26 -11.16 6.52 99.48 0.65 -10.51 16 26 C -0.10 -2.86 2.67 -10.73 -0.03 -2.88 16 27 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 28 C -0.14 -3.86 9.05 71.98 0.65 -3.21 16 29 C 0.12 3.60 5.41 86.35 0.47 4.07 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 0.94 6.80 -2.39 -0.02 0.93 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 1.43 8.05 -2.39 -0.02 1.41 16 34 H 0.05 1.26 6.42 -2.39 -0.02 1.25 16 35 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 36 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 38 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.11 2.10 5.43 -2.39 -0.01 2.09 16 40 H 0.12 1.95 7.60 -2.39 -0.02 1.93 16 41 H 0.06 1.78 7.74 -2.39 -0.02 1.76 16 42 H 0.11 2.09 5.93 -2.38 -0.01 2.08 16 43 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.36 15.29 3.79 -92.71 -0.35 14.94 16 46 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 47 H 0.04 1.38 7.54 -2.39 -0.02 1.36 16 48 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.08 2.60 7.01 -2.39 -0.02 2.58 16 51 H 0.05 1.64 6.64 -2.39 -0.02 1.63 16 Total: -1.00 -69.41 392.82 4.62 -64.79 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: 0.50 Total: 33.90 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 5.51 Total: -12.21 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -3.24 Total: -112.88 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.05 Total: -20.16 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.90 Total: 46.56 kcal Total: -69.41 4.62 -64.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036080005.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.712 kcal (2) G-P(sol) polarization free energy of solvation -69.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds