Wall clock time and date at job start Tue Mar 31 2020 16:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47335 * 2 1 4 4 C 1.38260 * 119.99559 * 89.99610 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38255 * 120.00300 * 0.28729 * 5 4 3 7 7 C 1.38215 * 119.99743 * 359.94741 * 6 5 4 8 8 C 1.50706 * 119.99787 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.46929 * 90.00588 * 8 7 6 10 10 O 1.21285 * 119.99849 * 359.97438 * 9 8 7 11 11 N 1.34769 * 120.00226 * 179.97438 * 9 8 7 12 12 C 1.46924 * 120.63059 * 359.97438 * 11 9 8 13 13 C 1.53191 * 108.77490 * 126.36782 * 12 11 9 14 14 C 1.53032 * 109.31639 * 54.63786 * 13 12 11 15 15 H 1.08994 * 109.46655 * 178.61219 * 14 13 12 16 16 N 1.46508 * 109.45893 * 58.65089 * 14 13 12 17 17 C 1.36936 * 119.99353 * 85.00430 * 16 14 13 18 18 H 1.07998 * 120.00630 * 0.02562 * 17 16 14 19 19 C 1.38822 * 119.99597 * 179.97438 * 17 16 14 20 20 N 1.31622 * 119.99926 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99901 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47337 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47060 * 120.00559 * 21 19 17 24 24 H 1.48502 * 109.47172 * 240.00432 * 21 19 17 25 25 C 1.53045 * 109.53801 * 298.63802 * 14 13 12 26 26 H 1.09004 * 109.49131 * 301.40639 * 25 14 13 27 27 C 1.52997 * 109.49901 * 181.34663 * 25 14 13 28 28 C 1.46926 * 120.63201 * 179.72050 * 11 9 8 29 29 C 1.38208 * 120.00333 * 270.19462 * 3 2 1 30 30 H 1.09006 * 109.46825 * 59.99630 * 1 2 3 31 31 H 1.08998 * 109.47466 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47325 * 300.00000 * 1 2 3 33 33 H 1.09000 * 109.46885 * 240.00162 * 2 1 3 34 34 H 1.08998 * 109.47085 * 120.00377 * 2 1 3 35 35 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 36 36 H 1.07999 * 119.99941 * 180.25946 * 5 4 3 37 37 H 1.08005 * 120.00210 * 179.97438 * 6 5 4 38 38 H 1.08998 * 109.46732 * 210.00146 * 8 7 6 39 39 H 1.08993 * 109.47519 * 330.00638 * 8 7 6 40 40 H 1.08997 * 109.59198 * 246.15714 * 12 11 9 41 41 H 1.09001 * 109.58353 * 6.43800 * 12 11 9 42 42 H 1.09007 * 109.49458 * 174.58988 * 13 12 11 43 43 H 1.09000 * 109.49949 * 294.68092 * 13 12 11 44 44 H 0.96995 * 119.99958 * 265.00438 * 16 14 13 45 45 H 0.96997 * 119.99669 * 179.97438 * 20 19 17 46 46 H 1.09004 * 109.47294 * 59.99445 * 27 25 14 47 47 H 1.09002 * 109.47084 * 179.97438 * 27 25 14 48 48 H 1.09000 * 109.47489 * 299.99876 * 27 25 14 49 49 H 1.08998 * 109.59034 * 353.41904 * 28 11 9 50 50 H 1.08994 * 109.58748 * 113.84601 * 28 11 9 51 51 H 1.07998 * 119.99908 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0725 1.1974 5 6 2.7290 3.3736 1.1975 6 6 2.9594 4.0254 0.0002 7 6 2.7245 3.3755 -1.1968 8 6 2.9762 4.0859 -2.5019 9 6 4.3978 3.8437 -2.9395 10 8 5.1342 3.1619 -2.2584 11 7 4.8509 4.3848 -4.0877 12 6 3.9707 5.2125 -4.9236 13 6 4.6579 6.5570 -5.1824 14 6 6.0440 6.3099 -5.7820 15 1 6.5253 7.2654 -5.9900 16 7 5.9087 5.5505 -7.0276 17 6 5.6604 6.2047 -8.2047 18 1 5.5647 7.2804 -8.2149 19 6 5.5328 5.4852 -9.3850 20 7 5.6499 4.1743 -9.3726 21 14 5.1933 6.3775 -10.9906 22 1 5.1058 7.8380 -10.7364 23 1 6.2947 6.1075 -11.9493 24 1 3.9101 5.8964 -11.5626 25 6 6.8963 5.5148 -4.7902 26 1 6.9768 6.0682 -3.8545 27 6 8.2927 5.2973 -5.3766 28 6 6.2361 4.1627 -4.5244 29 6 2.2590 2.0737 -1.1969 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.0831 1.5632 2.1327 36 1 2.9130 3.8812 2.1328 37 1 3.3234 5.0423 0.0002 38 1 2.2926 3.7049 -3.2606 39 1 2.8138 5.1556 -2.3706 40 1 3.7867 4.7077 -5.8720 41 1 3.0248 5.3765 -4.4074 42 1 4.0591 7.1433 -5.8796 43 1 4.7594 7.1005 -4.2431 44 1 5.9950 4.5844 -7.0184 45 1 5.5603 3.6716 -10.1973 46 1 8.7617 6.2629 -5.5660 47 1 8.8995 4.7314 -4.6697 48 1 8.2118 4.7431 -6.3117 49 1 6.7854 3.6364 -3.7439 50 1 6.2402 3.5707 -5.4396 51 1 2.0756 1.5658 -2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036082264.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:51 Heat of formation + Delta-G solvation = -16.791951 kcal Electronic energy + Delta-G solvation = -28594.895237 eV Core-core repulsion = 24879.428407 eV Total energy + Delta-G solvation = -3715.466831 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.27636 -39.29998 -37.61880 -34.55317 -34.25261 -33.00001 -32.28659 -31.38833 -29.64167 -29.18165 -28.09499 -25.91363 -24.71876 -24.07055 -23.47825 -22.14905 -21.64445 -20.76110 -19.32620 -18.11958 -17.39473 -16.81298 -16.57536 -15.90152 -15.64922 -15.05730 -14.93376 -14.57386 -14.31248 -13.99634 -13.94292 -13.77765 -13.43580 -13.31173 -13.16908 -13.14470 -12.85600 -12.52925 -12.23005 -12.12983 -11.99416 -11.84981 -11.54068 -11.44415 -11.32574 -11.18473 -10.94165 -10.92191 -10.86478 -10.79494 -10.49155 -10.45964 -10.17254 -9.84289 -9.58091 -9.55624 -8.95752 -8.79986 -8.62346 -8.19395 -6.99614 -5.81282 -3.09649 1.30332 1.37709 2.87830 3.28299 3.39409 3.45744 3.47704 3.77198 4.55074 4.55908 4.60781 4.76691 4.83448 4.98457 5.05353 5.15435 5.17434 5.22790 5.32292 5.34044 5.37263 5.41718 5.48809 5.51744 5.54504 5.58273 5.70488 5.70777 5.74118 5.81729 5.92500 5.94757 6.03625 6.06585 6.07698 6.09661 6.25519 6.31043 6.40928 6.41796 6.50144 6.53132 6.58872 6.64249 6.67890 6.76597 6.92888 6.97681 7.01588 7.67001 7.75513 8.37254 8.44750 9.48977 10.05868 10.40994 11.41168 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017535 B = 0.002601 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.420065 B =10761.258930 C =11463.280591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.082 4.082 4 C -0.122 4.122 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.056 4.056 8 C -0.103 4.103 9 C 0.514 3.486 10 O -0.546 6.546 11 N -0.602 5.602 12 C 0.112 3.888 13 C -0.150 4.150 14 C 0.178 3.822 15 H 0.050 0.950 16 N -0.719 5.719 17 C -0.236 4.236 18 H 0.070 0.930 19 C -0.012 4.012 20 N -0.932 5.932 21 Si 0.904 3.096 22 H -0.281 1.281 23 H -0.293 1.293 24 H -0.293 1.293 25 C -0.108 4.108 26 H 0.064 0.936 27 C -0.137 4.137 28 C 0.120 3.880 29 C -0.102 4.102 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.048 0.952 44 H 0.384 0.616 45 H 0.254 0.746 46 H 0.053 0.947 47 H 0.043 0.957 48 H 0.071 0.929 49 H 0.082 0.918 50 H 0.074 0.926 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.954 -2.147 19.246 20.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.140 4.140 5 C -0.135 4.135 6 C -0.128 4.128 7 C -0.056 4.056 8 C -0.143 4.143 9 C 0.302 3.698 10 O -0.424 6.424 11 N -0.334 5.334 12 C -0.010 4.010 13 C -0.191 4.191 14 C 0.068 3.932 15 H 0.068 0.932 16 N -0.361 5.361 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.208 4.208 20 N -0.580 5.580 21 Si 0.735 3.265 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.220 1.220 25 C -0.128 4.128 26 H 0.082 0.918 27 C -0.195 4.195 28 C -0.002 4.002 29 C -0.120 4.120 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.219 0.781 45 H 0.064 0.936 46 H 0.072 0.928 47 H 0.062 0.938 48 H 0.090 0.910 49 H 0.101 0.899 50 H 0.092 0.908 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.587 -2.394 19.439 21.004 hybrid contribution -0.189 0.319 -1.116 1.176 sum -7.776 -2.075 18.323 20.012 Atomic orbital electron populations 1.21747 0.94794 1.01592 1.02176 1.20537 0.96071 0.92792 1.02864 1.19815 0.99279 0.96052 0.93092 1.20953 1.00748 0.95038 0.97289 1.21037 0.99742 0.95010 0.97755 1.20947 0.99881 1.00010 0.91998 1.19314 0.98240 0.94332 0.93734 1.20718 0.95375 1.02243 0.95948 1.20386 0.89210 0.79724 0.80490 1.90682 1.58320 1.39394 1.53955 1.48131 1.13073 1.50289 1.21945 1.21745 0.91728 0.92158 0.95369 1.22519 1.00866 0.95832 0.99872 1.20215 0.91646 0.94706 0.86650 0.93160 1.42487 1.85642 1.06239 1.01733 1.19264 1.40496 0.91518 0.85489 0.91207 1.24711 1.02944 0.95483 0.97703 1.69660 1.57005 1.04720 1.26644 0.86169 0.77421 0.78606 0.84277 1.20649 1.21988 1.21991 1.21627 0.96038 0.96378 0.98758 0.91754 1.21665 0.94743 1.01734 1.01357 1.21535 0.81026 0.97340 1.00345 1.20849 0.99604 0.93953 0.97622 0.92491 0.92496 0.92662 0.90987 0.91160 0.86474 0.86264 0.86396 0.88038 0.88084 0.89686 0.91211 0.90745 0.93341 0.78091 0.93578 0.92834 0.93798 0.91045 0.89923 0.90794 0.86338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.89 37.16 0.37 -0.74 16 2 C -0.09 -0.76 6.06 -27.88 -0.17 -0.92 16 3 C -0.08 -0.92 5.13 -104.63 -0.54 -1.45 16 4 C -0.12 -1.29 9.70 -39.58 -0.38 -1.67 16 5 C -0.12 -1.27 10.05 -39.58 -0.40 -1.66 16 6 C -0.11 -1.31 9.70 -39.58 -0.38 -1.70 16 7 C -0.06 -0.71 4.37 -104.62 -0.46 -1.17 16 8 C -0.10 -1.24 4.18 -29.03 -0.12 -1.37 16 9 C 0.51 8.13 7.69 -10.99 -0.08 8.05 16 10 O -0.55 -10.45 15.45 5.55 0.09 -10.36 16 11 N -0.60 -9.60 2.98 -173.01 -0.52 -10.11 16 12 C 0.11 1.71 6.09 -3.71 -0.02 1.69 16 13 C -0.15 -2.38 5.78 -26.62 -0.15 -2.54 16 14 C 0.18 3.27 2.53 -67.89 -0.17 3.09 16 15 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 16 N -0.72 -16.28 3.64 -53.38 -0.19 -16.47 16 17 C -0.24 -6.09 9.93 -15.06 -0.15 -6.23 16 18 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 20 N -0.93 -26.86 13.06 55.49 0.72 -26.13 16 21 Si 0.90 21.59 29.55 -169.99 -5.02 16.57 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 C -0.11 -1.77 2.66 -90.70 -0.24 -2.01 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 27 C -0.14 -2.22 9.06 37.16 0.34 -1.88 16 28 C 0.12 2.04 5.40 -3.91 -0.02 2.02 16 29 C -0.10 -1.26 9.36 -39.59 -0.37 -1.63 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 34 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 37 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 38 H 0.10 1.08 7.88 -51.93 -0.41 0.67 16 39 H 0.10 1.02 7.64 -51.93 -0.40 0.62 16 40 H 0.08 1.54 7.74 -51.93 -0.40 1.14 16 41 H 0.07 0.84 5.93 -51.93 -0.31 0.54 16 42 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.38 9.38 5.94 -40.82 -0.24 9.13 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.07 1.34 7.54 -51.93 -0.39 0.94 16 49 H 0.08 1.44 7.01 -51.93 -0.36 1.08 16 50 H 0.07 1.40 6.64 -51.93 -0.34 1.05 16 51 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 403.14 15.07 6.08 6.08 Total: -1.00 -30.47 403.14 -10.64 -41.11 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -8.74 Total: 9.88 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -3.06 Total: -10.56 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: 0.02 Total: -52.72 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.47 -10.64 -41.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036082264.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.318 kcal (2) G-P(sol) polarization free energy of solvation -30.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds