Wall clock time and date at job start Tue Mar 31 2020 16:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47335 * 2 1 4 4 C 1.38260 * 119.99559 * 89.99610 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38255 * 120.00300 * 0.28729 * 5 4 3 7 7 C 1.38215 * 119.99743 * 359.94741 * 6 5 4 8 8 C 1.50706 * 119.99787 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.46929 * 90.00588 * 8 7 6 10 10 O 1.21285 * 119.99849 * 359.97438 * 9 8 7 11 11 N 1.34769 * 120.00226 * 179.97438 * 9 8 7 12 12 C 1.46924 * 120.63059 * 359.97438 * 11 9 8 13 13 C 1.53191 * 108.77490 * 126.36782 * 12 11 9 14 14 C 1.53032 * 109.31639 * 54.63786 * 13 12 11 15 15 H 1.08994 * 109.46655 * 178.61219 * 14 13 12 16 16 N 1.46508 * 109.45893 * 58.65089 * 14 13 12 17 17 C 1.36936 * 119.99353 * 85.00430 * 16 14 13 18 18 H 1.07998 * 120.00630 * 0.02562 * 17 16 14 19 19 C 1.38822 * 119.99597 * 179.97438 * 17 16 14 20 20 N 1.31622 * 119.99926 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99901 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47337 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47060 * 120.00559 * 21 19 17 24 24 H 1.48502 * 109.47172 * 240.00432 * 21 19 17 25 25 C 1.53045 * 109.53801 * 298.63802 * 14 13 12 26 26 H 1.09004 * 109.49131 * 301.40639 * 25 14 13 27 27 C 1.52997 * 109.49901 * 181.34663 * 25 14 13 28 28 C 1.46926 * 120.63201 * 179.72050 * 11 9 8 29 29 C 1.38208 * 120.00333 * 270.19462 * 3 2 1 30 30 H 1.09006 * 109.46825 * 59.99630 * 1 2 3 31 31 H 1.08998 * 109.47466 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47325 * 300.00000 * 1 2 3 33 33 H 1.09000 * 109.46885 * 240.00162 * 2 1 3 34 34 H 1.08998 * 109.47085 * 120.00377 * 2 1 3 35 35 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 36 36 H 1.07999 * 119.99941 * 180.25946 * 5 4 3 37 37 H 1.08005 * 120.00210 * 179.97438 * 6 5 4 38 38 H 1.08998 * 109.46732 * 210.00146 * 8 7 6 39 39 H 1.08993 * 109.47519 * 330.00638 * 8 7 6 40 40 H 1.08997 * 109.59198 * 246.15714 * 12 11 9 41 41 H 1.09001 * 109.58353 * 6.43800 * 12 11 9 42 42 H 1.09007 * 109.49458 * 174.58988 * 13 12 11 43 43 H 1.09000 * 109.49949 * 294.68092 * 13 12 11 44 44 H 0.96995 * 119.99958 * 265.00438 * 16 14 13 45 45 H 0.96997 * 119.99669 * 179.97438 * 20 19 17 46 46 H 1.09004 * 109.47294 * 59.99445 * 27 25 14 47 47 H 1.09002 * 109.47084 * 179.97438 * 27 25 14 48 48 H 1.09000 * 109.47489 * 299.99876 * 27 25 14 49 49 H 1.08998 * 109.59034 * 353.41904 * 28 11 9 50 50 H 1.08994 * 109.58748 * 113.84601 * 28 11 9 51 51 H 1.07998 * 119.99908 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0725 1.1974 5 6 2.7290 3.3736 1.1975 6 6 2.9594 4.0254 0.0002 7 6 2.7245 3.3755 -1.1968 8 6 2.9762 4.0859 -2.5019 9 6 4.3978 3.8437 -2.9395 10 8 5.1342 3.1619 -2.2584 11 7 4.8509 4.3848 -4.0877 12 6 3.9707 5.2125 -4.9236 13 6 4.6579 6.5570 -5.1824 14 6 6.0440 6.3099 -5.7820 15 1 6.5253 7.2654 -5.9900 16 7 5.9087 5.5505 -7.0276 17 6 5.6604 6.2047 -8.2047 18 1 5.5647 7.2804 -8.2149 19 6 5.5328 5.4852 -9.3850 20 7 5.6499 4.1743 -9.3726 21 14 5.1933 6.3775 -10.9906 22 1 5.1058 7.8380 -10.7364 23 1 6.2947 6.1075 -11.9493 24 1 3.9101 5.8964 -11.5626 25 6 6.8963 5.5148 -4.7902 26 1 6.9768 6.0682 -3.8545 27 6 8.2927 5.2973 -5.3766 28 6 6.2361 4.1627 -4.5244 29 6 2.2590 2.0737 -1.1969 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.0831 1.5632 2.1327 36 1 2.9130 3.8812 2.1328 37 1 3.3234 5.0423 0.0002 38 1 2.2926 3.7049 -3.2606 39 1 2.8138 5.1556 -2.3706 40 1 3.7867 4.7077 -5.8720 41 1 3.0248 5.3765 -4.4074 42 1 4.0591 7.1433 -5.8796 43 1 4.7594 7.1005 -4.2431 44 1 5.9950 4.5844 -7.0184 45 1 5.5603 3.6716 -10.1973 46 1 8.7617 6.2629 -5.5660 47 1 8.8995 4.7314 -4.6697 48 1 8.2118 4.7431 -6.3117 49 1 6.7854 3.6364 -3.7439 50 1 6.2402 3.5707 -5.4396 51 1 2.0756 1.5658 -2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036082264.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:51 Heat of formation + Delta-G solvation = -31.369558 kcal Electronic energy + Delta-G solvation = -28595.527370 eV Core-core repulsion = 24879.428407 eV Total energy + Delta-G solvation = -3716.098963 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.47622 -40.27753 -38.97405 -35.83426 -35.35230 -34.51650 -33.30106 -32.89739 -30.89884 -30.41383 -29.11139 -27.26044 -26.18969 -25.23181 -24.78332 -23.06799 -22.97026 -21.68450 -20.52724 -19.54047 -19.21622 -18.11118 -17.44685 -16.90597 -16.82171 -16.51455 -16.00586 -15.88293 -15.80139 -15.52187 -14.92039 -14.81462 -14.61266 -14.51241 -14.32729 -14.19965 -14.01537 -13.75701 -13.58587 -13.04829 -12.96956 -12.93587 -12.88502 -12.78666 -12.68449 -12.57664 -12.39582 -12.11343 -12.04617 -11.94970 -11.88617 -11.67074 -11.61898 -11.56667 -11.14429 -10.93298 -10.77584 -9.66304 -9.56342 -9.47088 -8.90920 -7.87884 -5.13826 0.44520 0.53206 1.49171 1.50842 1.59185 1.64765 2.06859 2.60481 2.88190 3.46223 3.64387 3.69641 3.83495 3.89775 3.96697 4.02079 4.07841 4.12684 4.24172 4.27445 4.33981 4.38536 4.42272 4.50457 4.55591 4.59517 4.60424 4.68377 4.70929 4.72914 4.79260 4.86644 4.97025 5.03299 5.05774 5.09110 5.14673 5.20784 5.23296 5.26162 5.31093 5.33506 5.38686 5.48890 5.59444 5.61919 5.67195 5.69252 5.75212 6.16318 6.34165 6.50518 7.19429 7.41569 8.18267 8.41518 9.35677 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017535 B = 0.002601 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.420065 B =10761.258930 C =11463.280591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.091 4.091 4 C -0.128 4.128 5 C -0.122 4.122 6 C -0.125 4.125 7 C -0.074 4.074 8 C -0.096 4.096 9 C 0.513 3.487 10 O -0.582 6.582 11 N -0.602 5.602 12 C 0.118 3.882 13 C -0.142 4.142 14 C 0.171 3.829 15 H 0.047 0.953 16 N -0.725 5.725 17 C -0.223 4.223 18 H 0.076 0.924 19 C -0.075 4.075 20 N -0.970 5.970 21 Si 0.963 3.037 22 H -0.266 1.266 23 H -0.302 1.302 24 H -0.298 1.298 25 C -0.097 4.097 26 H 0.085 0.915 27 C -0.132 4.132 28 C 0.125 3.875 29 C -0.124 4.124 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.129 0.871 38 H 0.115 0.885 39 H 0.128 0.872 40 H 0.051 0.949 41 H 0.109 0.891 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.373 0.627 45 H 0.247 0.753 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.038 0.962 49 H 0.078 0.922 50 H 0.046 0.954 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.041 -0.656 21.405 23.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.091 4.091 4 C -0.146 4.146 5 C -0.140 4.140 6 C -0.143 4.143 7 C -0.074 4.074 8 C -0.135 4.135 9 C 0.303 3.697 10 O -0.462 6.462 11 N -0.334 5.334 12 C -0.004 4.004 13 C -0.182 4.182 14 C 0.062 3.938 15 H 0.065 0.935 16 N -0.366 5.366 17 C -0.355 4.355 18 H 0.094 0.906 19 C -0.267 4.267 20 N -0.621 5.621 21 Si 0.794 3.206 22 H -0.190 1.190 23 H -0.230 1.230 24 H -0.226 1.226 25 C -0.117 4.117 26 H 0.103 0.897 27 C -0.190 4.190 28 C 0.002 3.998 29 C -0.142 4.142 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.147 0.853 38 H 0.133 0.867 39 H 0.146 0.854 40 H 0.069 0.931 41 H 0.127 0.873 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.206 0.794 45 H 0.055 0.945 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.058 0.942 49 H 0.096 0.904 50 H 0.064 0.936 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.688 -0.847 21.628 23.323 hybrid contribution 0.189 -0.152 -1.667 1.684 sum -8.499 -1.000 19.961 21.718 Atomic orbital electron populations 1.21715 0.93770 1.02400 1.02014 1.20581 0.96923 0.91620 1.03152 1.20120 0.98932 0.97043 0.93027 1.21284 1.00128 0.95210 0.97977 1.21385 0.98979 0.95222 0.98443 1.21200 1.00135 1.00761 0.92186 1.19464 0.99009 0.94663 0.94259 1.20746 0.92623 1.03981 0.96163 1.21045 0.90408 0.78536 0.79698 1.90663 1.59680 1.40872 1.55016 1.48177 1.12585 1.50439 1.22188 1.21718 0.93195 0.91154 0.94376 1.22390 0.98680 0.96315 1.00859 1.20462 0.93622 0.94147 0.85561 0.93475 1.42606 1.85470 1.05897 1.02614 1.19611 1.37635 0.91825 0.86402 0.90581 1.25390 1.04572 0.96091 1.00659 1.69814 1.59548 1.06103 1.26679 0.85215 0.76367 0.78330 0.80710 1.19045 1.22959 1.22614 1.21542 0.95493 0.95750 0.98916 0.89678 1.21604 0.95232 1.01882 1.00268 1.21343 0.82204 0.97386 0.98872 1.21023 1.00601 0.94363 0.98180 0.93195 0.91214 0.92254 0.91543 0.90027 0.84288 0.83980 0.85268 0.86653 0.85405 0.93051 0.87305 0.91300 0.90372 0.79390 0.94452 0.92120 0.91930 0.94242 0.90385 0.93555 0.86619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.89 71.98 0.71 -1.24 16 2 C -0.09 -1.42 6.06 29.85 0.18 -1.24 16 3 C -0.09 -1.93 5.13 -19.87 -0.10 -2.04 16 4 C -0.13 -2.46 9.70 22.27 0.22 -2.24 16 5 C -0.12 -2.38 10.05 22.27 0.22 -2.16 16 6 C -0.12 -2.74 9.70 22.27 0.22 -2.53 16 7 C -0.07 -1.77 4.37 -19.86 -0.09 -1.85 16 8 C -0.10 -2.12 4.18 29.10 0.12 -1.99 16 9 C 0.51 15.64 7.69 87.66 0.67 16.31 16 10 O -0.58 -22.09 15.45 -3.05 -0.05 -22.14 16 11 N -0.60 -18.61 2.98 -819.69 -2.44 -21.05 16 12 C 0.12 3.39 6.09 86.36 0.53 3.92 16 13 C -0.14 -4.18 5.78 30.67 0.18 -4.00 16 14 C 0.17 6.07 2.53 45.02 0.11 6.18 16 15 H 0.05 1.72 8.08 -2.39 -0.02 1.70 16 16 N -0.72 -33.16 3.64 -322.80 -1.18 -34.33 16 17 C -0.22 -11.46 9.93 84.04 0.83 -10.63 16 18 H 0.08 3.77 7.83 -2.91 -0.02 3.75 16 19 C -0.08 -4.13 5.50 84.86 0.47 -3.66 16 20 N -0.97 -57.63 13.06 21.66 0.28 -57.34 16 21 Si 0.96 44.91 29.55 68.60 2.03 46.94 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 24 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 25 C -0.10 -3.08 2.66 -10.85 -0.03 -3.11 16 26 H 0.08 2.40 8.14 -2.38 -0.02 2.39 16 27 C -0.13 -4.21 9.06 71.98 0.65 -3.56 16 28 C 0.13 4.28 5.40 86.23 0.47 4.75 16 29 C -0.12 -2.99 9.36 22.27 0.21 -2.78 16 30 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.07 1.16 8.09 -2.39 -0.02 1.14 16 34 H 0.08 1.15 8.09 -2.39 -0.02 1.13 16 35 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 36 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 37 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 38 H 0.12 2.22 7.88 -2.39 -0.02 2.20 16 39 H 0.13 2.11 7.64 -2.39 -0.02 2.10 16 40 H 0.05 1.86 7.74 -2.39 -0.02 1.84 16 41 H 0.11 2.29 5.93 -2.39 -0.01 2.27 16 42 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 43 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.37 18.85 5.94 -92.71 -0.55 18.30 16 45 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 46 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 47 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.04 1.51 7.54 -2.39 -0.02 1.49 16 49 H 0.08 2.74 7.01 -2.39 -0.02 2.73 16 50 H 0.05 1.84 6.64 -2.39 -0.02 1.82 16 51 H 0.12 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -67.05 403.14 4.57 -62.49 By element: Atomic # 1 Polarization: 36.97 SS G_CDS: 0.35 Total: 37.32 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 5.57 Total: -11.87 kcal Atomic # 7 Polarization: -109.40 SS G_CDS: -3.33 Total: -112.73 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.05 Total: -22.14 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -67.05 4.57 -62.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036082264.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.116 kcal (2) G-P(sol) polarization free energy of solvation -67.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds