Wall clock time and date at job start Tue Mar 31 2020 16:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47335 * 2 1 4 4 C 1.38260 * 119.99559 * 89.99610 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38254 * 120.00319 * 0.26336 * 5 4 3 7 7 C 1.38216 * 119.99725 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99769 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.46813 * 90.00349 * 8 7 6 10 10 O 1.21282 * 119.99915 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99889 * 179.97438 * 9 8 7 12 12 C 1.46924 * 120.62806 * 359.72425 * 11 9 8 13 13 C 1.52764 * 109.00417 * 233.57633 * 12 11 9 14 14 C 1.53036 * 109.38636 * 305.59169 * 13 12 11 15 15 H 1.09000 * 109.45977 * 181.26052 * 14 13 12 16 16 N 1.46501 * 109.46192 * 301.21647 * 14 13 12 17 17 C 1.36935 * 120.00023 * 275.07483 * 16 14 13 18 18 H 1.07992 * 120.00368 * 359.97438 * 17 16 14 19 19 C 1.38814 * 119.99561 * 180.02562 * 17 16 14 20 20 N 1.31622 * 120.00489 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99887 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46952 * 59.99383 * 21 19 17 23 23 H 1.48492 * 109.47139 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47089 * 299.99986 * 21 19 17 25 25 C 1.53032 * 109.53979 * 61.24049 * 14 13 12 26 26 H 1.09003 * 109.50140 * 58.58442 * 25 14 13 27 27 C 1.53000 * 109.50153 * 178.68556 * 25 14 13 28 28 C 1.46922 * 120.62841 * 179.97438 * 11 9 8 29 29 C 1.38208 * 120.00309 * 270.23770 * 3 2 1 30 30 H 1.09006 * 109.46825 * 59.99630 * 1 2 3 31 31 H 1.08998 * 109.47466 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47325 * 300.00000 * 1 2 3 33 33 H 1.09000 * 109.46885 * 240.00162 * 2 1 3 34 34 H 1.08998 * 109.47085 * 120.00377 * 2 1 3 35 35 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 36 36 H 1.07999 * 119.99941 * 180.27784 * 5 4 3 37 37 H 1.07997 * 120.00472 * 180.02562 * 6 5 4 38 38 H 1.09000 * 109.46849 * 210.00007 * 8 7 6 39 39 H 1.08993 * 109.47102 * 330.00304 * 8 7 6 40 40 H 1.08989 * 109.59009 * 353.41692 * 12 11 9 41 41 H 1.09003 * 109.58348 * 113.84460 * 12 11 9 42 42 H 1.09006 * 109.56472 * 185.55222 * 13 12 11 43 43 H 1.08996 * 109.38610 * 65.52063 * 13 12 11 44 44 H 0.97001 * 119.99753 * 95.06704 * 16 14 13 45 45 H 0.96992 * 120.00139 * 180.02562 * 20 19 17 46 46 H 1.08997 * 109.47501 * 179.84043 * 27 25 14 47 47 H 1.09000 * 109.46803 * 299.83582 * 27 25 14 48 48 H 1.09000 * 109.47402 * 59.83264 * 27 25 14 49 49 H 1.08997 * 109.58967 * 246.15983 * 28 11 9 50 50 H 1.09002 * 109.58874 * 6.44469 * 28 11 9 51 51 H 1.07999 * 119.99941 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0725 1.1974 5 6 2.7290 3.3736 1.1975 6 6 2.9599 4.0252 0.0002 7 6 2.7249 3.3754 -1.1968 8 6 2.9772 4.0855 -2.5019 9 6 4.3988 3.8428 -2.9392 10 8 5.1344 3.1600 -2.2584 11 7 4.8523 4.3837 -4.0874 12 6 3.9709 5.2071 -4.9263 13 6 3.9770 4.6516 -6.3493 14 6 5.4193 4.5602 -6.8528 15 1 5.4236 4.1850 -7.8761 16 7 6.0335 5.8898 -6.8182 17 6 5.8589 6.7522 -7.8675 18 1 5.2688 6.4520 -8.7207 19 6 6.4414 8.0118 -7.8348 20 7 7.1610 8.3774 -6.7952 21 14 6.2039 9.1880 -9.2665 22 1 4.7560 9.4665 -9.4433 23 1 6.9215 10.4578 -8.9882 24 1 6.7448 8.5746 -10.5061 25 6 6.2146 3.6077 -5.9572 26 1 5.7439 2.6246 -5.9630 27 6 7.6476 3.4916 -6.4806 28 6 6.2358 4.1565 -4.5266 29 6 2.2581 2.0740 -1.1969 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.0831 1.5632 2.1327 36 1 2.9132 3.8811 2.1328 37 1 3.3246 5.0418 0.0002 38 1 2.2936 3.7048 -3.2607 39 1 2.8150 5.1553 -2.3707 40 1 2.9565 5.1785 -4.5286 41 1 4.3326 6.2353 -4.9369 42 1 3.4051 5.3118 -7.0014 43 1 3.5271 3.6588 -6.3520 44 1 6.5637 6.1593 -6.0519 45 1 7.5676 9.2577 -6.7723 46 1 8.2145 2.8153 -5.8408 47 1 7.6322 3.1014 -7.4982 48 1 8.1171 4.4753 -6.4758 49 1 6.7855 5.0974 -4.5040 50 1 6.7161 3.4367 -3.8638 51 1 2.0748 1.5661 -2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036082266.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:57 Heat of formation + Delta-G solvation = -16.625964 kcal Electronic energy + Delta-G solvation = -28605.343950 eV Core-core repulsion = 24889.884317 eV Total energy + Delta-G solvation = -3715.459633 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.27532 -39.29988 -37.61640 -34.56459 -34.25203 -32.98974 -32.28693 -31.39610 -29.65064 -29.19066 -28.09500 -25.90641 -24.71551 -24.08385 -23.47122 -22.15032 -21.64616 -20.75663 -19.33760 -18.10809 -17.38857 -16.81118 -16.57800 -15.91377 -15.64272 -15.04272 -14.96623 -14.55920 -14.29859 -13.98542 -13.95543 -13.82075 -13.45873 -13.31489 -13.18174 -13.09866 -12.87568 -12.52324 -12.22254 -12.17897 -11.94878 -11.85943 -11.58938 -11.41836 -11.32812 -11.18769 -10.93209 -10.90976 -10.87040 -10.78960 -10.49068 -10.44802 -10.23455 -9.84434 -9.57994 -9.55194 -8.94573 -8.80194 -8.62278 -8.19204 -6.99521 -5.80679 -3.09228 1.30417 1.37565 2.87915 3.28453 3.40303 3.45673 3.46423 3.77178 4.54526 4.55707 4.60078 4.76411 4.83009 4.97094 5.05376 5.13354 5.18358 5.21577 5.31369 5.34283 5.37337 5.41347 5.48083 5.52894 5.53394 5.58613 5.68039 5.69515 5.73749 5.82459 5.91465 5.93802 6.03028 6.05970 6.07636 6.09743 6.25733 6.31380 6.41246 6.42442 6.50381 6.52670 6.58620 6.64395 6.68094 6.76549 6.93216 6.97687 7.01852 7.66262 7.75609 8.37866 8.44846 9.49367 10.06268 10.41385 11.41628 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020515 B = 0.002504 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.557468 B =11178.201072 C =11453.121963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.083 4.083 4 C -0.122 4.122 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.056 4.056 8 C -0.103 4.103 9 C 0.514 3.486 10 O -0.546 6.546 11 N -0.602 5.602 12 C 0.113 3.887 13 C -0.150 4.150 14 C 0.179 3.821 15 H 0.050 0.950 16 N -0.718 5.718 17 C -0.238 4.238 18 H 0.069 0.931 19 C -0.011 4.011 20 N -0.933 5.933 21 Si 0.905 3.095 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.287 1.287 25 C -0.108 4.108 26 H 0.064 0.936 27 C -0.137 4.137 28 C 0.120 3.880 29 C -0.103 4.103 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.047 0.953 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.043 0.957 47 H 0.052 0.948 48 H 0.071 0.929 49 H 0.074 0.926 50 H 0.083 0.917 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.979 -13.405 12.324 21.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.083 4.083 4 C -0.140 4.140 5 C -0.135 4.135 6 C -0.128 4.128 7 C -0.056 4.056 8 C -0.143 4.143 9 C 0.302 3.698 10 O -0.424 6.424 11 N -0.334 5.334 12 C -0.010 4.010 13 C -0.191 4.191 14 C 0.068 3.932 15 H 0.068 0.932 16 N -0.361 5.361 17 C -0.369 4.369 18 H 0.087 0.913 19 C -0.208 4.208 20 N -0.581 5.581 21 Si 0.736 3.264 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.214 1.214 25 C -0.128 4.128 26 H 0.083 0.917 27 C -0.195 4.195 28 C -0.003 4.003 29 C -0.121 4.121 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.066 0.934 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.072 0.928 48 H 0.090 0.910 49 H 0.092 0.908 50 H 0.101 0.899 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.605 -13.649 12.519 21.857 hybrid contribution 0.046 1.009 -0.702 1.230 sum -11.559 -12.640 11.818 20.810 Atomic orbital electron populations 1.21748 0.94815 1.01555 1.02192 1.20530 0.96047 0.92817 1.02808 1.19803 0.99402 0.96024 0.93111 1.20954 1.00748 0.95040 0.97286 1.21051 0.99624 0.94992 0.97806 1.20979 0.99676 1.00110 0.91995 1.19315 0.98228 0.94318 0.93762 1.20719 0.95297 1.02431 0.95840 1.20386 0.89165 0.79505 0.80749 1.90681 1.58368 1.39367 1.53935 1.48134 1.13186 1.50417 1.21705 1.21654 0.92742 0.95846 0.90734 1.22451 1.01199 0.99634 0.95866 1.20206 0.89791 0.86969 0.96209 0.93188 1.42472 1.60546 1.10875 1.22190 1.19170 1.26283 0.94314 0.97162 0.91321 1.24707 1.00446 0.97839 0.97768 1.69636 1.38071 1.20700 1.29669 0.86313 0.77425 0.80612 0.82070 1.21376 1.21811 1.21373 1.21701 0.97419 0.98785 0.94860 0.91730 1.21667 0.95256 1.02602 0.99999 1.21629 0.81941 1.01674 0.95026 1.20816 0.99795 0.93944 0.97525 0.92523 0.92524 0.92630 0.91067 0.91163 0.86475 0.86214 0.86275 0.88129 0.87991 0.91223 0.89692 0.90716 0.93379 0.78083 0.93465 0.93798 0.92848 0.91040 0.90774 0.89911 0.86455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 37.16 0.37 -0.68 16 2 C -0.08 -0.72 6.06 -27.88 -0.17 -0.89 16 3 C -0.08 -0.91 5.13 -104.63 -0.54 -1.45 16 4 C -0.12 -1.29 9.70 -39.58 -0.38 -1.67 16 5 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 6 C -0.11 -1.34 9.70 -39.58 -0.38 -1.73 16 7 C -0.06 -0.71 4.37 -104.62 -0.46 -1.17 16 8 C -0.10 -1.25 4.18 -29.03 -0.12 -1.37 16 9 C 0.51 8.14 7.69 -10.99 -0.08 8.06 16 10 O -0.55 -10.45 15.45 5.56 0.09 -10.37 16 11 N -0.60 -9.61 2.98 -173.01 -0.52 -10.12 16 12 C 0.11 1.72 6.06 -3.93 -0.02 1.69 16 13 C -0.15 -2.40 5.76 -26.83 -0.15 -2.55 16 14 C 0.18 3.28 2.53 -67.89 -0.17 3.10 16 15 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 16 N -0.72 -16.29 3.64 -53.39 -0.19 -16.49 16 17 C -0.24 -6.13 9.93 -15.06 -0.15 -6.28 16 18 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 19 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 20 N -0.93 -26.89 13.06 55.49 0.72 -26.16 16 21 Si 0.90 21.60 29.55 -169.99 -5.02 16.57 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 C -0.11 -1.77 2.67 -90.48 -0.24 -2.01 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 C -0.14 -2.23 9.06 37.16 0.34 -1.89 16 28 C 0.12 2.04 5.43 -3.69 -0.02 2.02 16 29 C -0.10 -1.24 9.36 -39.59 -0.37 -1.61 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 34 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 38 H 0.10 1.02 7.62 -51.93 -0.40 0.63 16 39 H 0.10 1.08 7.90 -51.93 -0.41 0.67 16 40 H 0.07 0.84 5.93 -51.94 -0.31 0.54 16 41 H 0.08 1.54 7.74 -51.93 -0.40 1.14 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.38 9.39 5.92 -40.82 -0.24 9.15 16 45 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.07 1.34 7.53 -51.93 -0.39 0.95 16 49 H 0.07 1.40 6.64 -51.93 -0.34 1.06 16 50 H 0.08 1.44 7.00 -51.93 -0.36 1.08 16 51 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 403.12 15.07 6.07 6.07 Total: -1.00 -30.44 403.12 -10.64 -41.08 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -8.74 Total: 9.91 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -3.06 Total: -10.50 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: 0.01 Total: -52.78 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.44 -10.64 -41.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036082266.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.456 kcal (2) G-P(sol) polarization free energy of solvation -30.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds