Wall clock time and date at job start Tue Mar 31 2020 16:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47335 * 2 1 4 4 C 1.38260 * 119.99559 * 89.99610 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38254 * 120.00319 * 0.26336 * 5 4 3 7 7 C 1.38216 * 119.99725 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99769 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.46813 * 90.00349 * 8 7 6 10 10 O 1.21282 * 119.99915 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99889 * 179.97438 * 9 8 7 12 12 C 1.46924 * 120.62806 * 359.72425 * 11 9 8 13 13 C 1.52764 * 109.00417 * 233.57633 * 12 11 9 14 14 C 1.53036 * 109.38636 * 305.59169 * 13 12 11 15 15 H 1.09000 * 109.45977 * 181.26052 * 14 13 12 16 16 N 1.46501 * 109.46192 * 301.21647 * 14 13 12 17 17 C 1.36935 * 120.00023 * 275.07483 * 16 14 13 18 18 H 1.07992 * 120.00368 * 359.97438 * 17 16 14 19 19 C 1.38814 * 119.99561 * 180.02562 * 17 16 14 20 20 N 1.31622 * 120.00489 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99887 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46952 * 59.99383 * 21 19 17 23 23 H 1.48492 * 109.47139 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47089 * 299.99986 * 21 19 17 25 25 C 1.53032 * 109.53979 * 61.24049 * 14 13 12 26 26 H 1.09003 * 109.50140 * 58.58442 * 25 14 13 27 27 C 1.53000 * 109.50153 * 178.68556 * 25 14 13 28 28 C 1.46922 * 120.62841 * 179.97438 * 11 9 8 29 29 C 1.38208 * 120.00309 * 270.23770 * 3 2 1 30 30 H 1.09006 * 109.46825 * 59.99630 * 1 2 3 31 31 H 1.08998 * 109.47466 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47325 * 300.00000 * 1 2 3 33 33 H 1.09000 * 109.46885 * 240.00162 * 2 1 3 34 34 H 1.08998 * 109.47085 * 120.00377 * 2 1 3 35 35 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 36 36 H 1.07999 * 119.99941 * 180.27784 * 5 4 3 37 37 H 1.07997 * 120.00472 * 180.02562 * 6 5 4 38 38 H 1.09000 * 109.46849 * 210.00007 * 8 7 6 39 39 H 1.08993 * 109.47102 * 330.00304 * 8 7 6 40 40 H 1.08989 * 109.59009 * 353.41692 * 12 11 9 41 41 H 1.09003 * 109.58348 * 113.84460 * 12 11 9 42 42 H 1.09006 * 109.56472 * 185.55222 * 13 12 11 43 43 H 1.08996 * 109.38610 * 65.52063 * 13 12 11 44 44 H 0.97001 * 119.99753 * 95.06704 * 16 14 13 45 45 H 0.96992 * 120.00139 * 180.02562 * 20 19 17 46 46 H 1.08997 * 109.47501 * 179.84043 * 27 25 14 47 47 H 1.09000 * 109.46803 * 299.83582 * 27 25 14 48 48 H 1.09000 * 109.47402 * 59.83264 * 27 25 14 49 49 H 1.08997 * 109.58967 * 246.15983 * 28 11 9 50 50 H 1.09002 * 109.58874 * 6.44469 * 28 11 9 51 51 H 1.07999 * 119.99941 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0725 1.1974 5 6 2.7290 3.3736 1.1975 6 6 2.9599 4.0252 0.0002 7 6 2.7249 3.3754 -1.1968 8 6 2.9772 4.0855 -2.5019 9 6 4.3988 3.8428 -2.9392 10 8 5.1344 3.1600 -2.2584 11 7 4.8523 4.3837 -4.0874 12 6 3.9709 5.2071 -4.9263 13 6 3.9770 4.6516 -6.3493 14 6 5.4193 4.5602 -6.8528 15 1 5.4236 4.1850 -7.8761 16 7 6.0335 5.8898 -6.8182 17 6 5.8589 6.7522 -7.8675 18 1 5.2688 6.4520 -8.7207 19 6 6.4414 8.0118 -7.8348 20 7 7.1610 8.3774 -6.7952 21 14 6.2039 9.1880 -9.2665 22 1 4.7560 9.4665 -9.4433 23 1 6.9215 10.4578 -8.9882 24 1 6.7448 8.5746 -10.5061 25 6 6.2146 3.6077 -5.9572 26 1 5.7439 2.6246 -5.9630 27 6 7.6476 3.4916 -6.4806 28 6 6.2358 4.1565 -4.5266 29 6 2.2581 2.0740 -1.1969 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.0831 1.5632 2.1327 36 1 2.9132 3.8811 2.1328 37 1 3.3246 5.0418 0.0002 38 1 2.2936 3.7048 -3.2607 39 1 2.8150 5.1553 -2.3707 40 1 2.9565 5.1785 -4.5286 41 1 4.3326 6.2353 -4.9369 42 1 3.4051 5.3118 -7.0014 43 1 3.5271 3.6588 -6.3520 44 1 6.5637 6.1593 -6.0519 45 1 7.5676 9.2577 -6.7723 46 1 8.2145 2.8153 -5.8408 47 1 7.6322 3.1014 -7.4982 48 1 8.1171 4.4753 -6.4758 49 1 6.7855 5.0974 -4.5040 50 1 6.7161 3.4367 -3.8638 51 1 2.0748 1.5661 -2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036082266.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:57 Heat of formation + Delta-G solvation = -31.157190 kcal Electronic energy + Delta-G solvation = -28605.974071 eV Core-core repulsion = 24889.884317 eV Total energy + Delta-G solvation = -3716.089754 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.47533 -40.27680 -38.97244 -35.83374 -35.34333 -34.50632 -33.30717 -32.90162 -30.91323 -30.40167 -29.11255 -27.25767 -26.18496 -25.22456 -24.77079 -23.06338 -22.98021 -21.66413 -20.54640 -19.52905 -19.20780 -18.11035 -17.45589 -16.91802 -16.79966 -16.52463 -16.00709 -15.87386 -15.79240 -15.52707 -14.89443 -14.77820 -14.69130 -14.52564 -14.30655 -14.15607 -14.00848 -13.76852 -13.59202 -13.07040 -12.98188 -12.88062 -12.83397 -12.79451 -12.67906 -12.56729 -12.38241 -12.16263 -12.10003 -11.95102 -11.86820 -11.65936 -11.61577 -11.56161 -11.14673 -10.91883 -10.76683 -9.66094 -9.56352 -9.47532 -8.90778 -7.87347 -5.13481 0.44113 0.53040 1.50572 1.51659 1.57517 1.64769 2.06882 2.60861 2.87855 3.46272 3.64266 3.69951 3.83730 3.89574 3.96792 4.01228 4.08192 4.12555 4.24685 4.30046 4.33594 4.38114 4.42421 4.51603 4.56254 4.59387 4.60570 4.68321 4.71511 4.72640 4.80148 4.86679 4.97276 5.04154 5.05947 5.11194 5.14622 5.20751 5.23799 5.26369 5.30903 5.33212 5.40930 5.48875 5.59132 5.61573 5.67197 5.69436 5.74999 6.15980 6.34330 6.50506 7.19429 7.41820 8.18646 8.41951 9.35783 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020515 B = 0.002504 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.557468 B =11178.201072 C =11453.121963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 C -0.090 4.090 4 C -0.128 4.128 5 C -0.124 4.124 6 C -0.130 4.130 7 C -0.073 4.073 8 C -0.096 4.096 9 C 0.513 3.487 10 O -0.582 6.582 11 N -0.602 5.602 12 C 0.118 3.882 13 C -0.143 4.143 14 C 0.172 3.828 15 H 0.047 0.953 16 N -0.725 5.725 17 C -0.226 4.226 18 H 0.076 0.924 19 C -0.074 4.074 20 N -0.970 5.970 21 Si 0.964 3.036 22 H -0.278 1.278 23 H -0.303 1.303 24 H -0.283 1.283 25 C -0.097 4.097 26 H 0.085 0.915 27 C -0.132 4.132 28 C 0.125 3.875 29 C -0.118 4.118 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.117 0.883 40 H 0.109 0.891 41 H 0.051 0.949 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.373 0.627 45 H 0.247 0.753 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.039 0.961 49 H 0.047 0.953 50 H 0.078 0.922 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.213 -15.148 12.426 24.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 C -0.090 4.090 4 C -0.146 4.146 5 C -0.142 4.142 6 C -0.148 4.148 7 C -0.074 4.074 8 C -0.135 4.135 9 C 0.303 3.697 10 O -0.462 6.462 11 N -0.334 5.334 12 C -0.004 4.004 13 C -0.183 4.183 14 C 0.063 3.937 15 H 0.065 0.935 16 N -0.366 5.366 17 C -0.358 4.358 18 H 0.094 0.906 19 C -0.266 4.266 20 N -0.621 5.621 21 Si 0.794 3.206 22 H -0.205 1.205 23 H -0.230 1.230 24 H -0.209 1.209 25 C -0.117 4.117 26 H 0.103 0.897 27 C -0.190 4.190 28 C 0.002 3.998 29 C -0.136 4.136 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.135 0.865 40 H 0.127 0.873 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.206 0.794 45 H 0.056 0.944 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.058 0.942 49 H 0.065 0.935 50 H 0.096 0.904 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.887 -15.430 12.595 24.281 hybrid contribution 0.740 1.435 -0.679 1.752 sum -13.147 -13.995 11.916 22.598 Atomic orbital electron populations 1.21719 0.93784 1.02421 1.02015 1.20577 0.96871 0.91391 1.03296 1.20146 0.98788 0.97138 0.92941 1.21281 1.00122 0.95000 0.98212 1.21354 0.99189 0.95420 0.98251 1.21190 1.00434 1.00592 0.92627 1.19463 0.99010 0.94882 0.94012 1.20748 0.92829 1.03543 0.96400 1.21043 0.90406 0.78408 0.79822 1.90662 1.59743 1.41024 1.54792 1.48179 1.12663 1.50458 1.22092 1.21626 0.94309 0.93785 0.90692 1.22322 0.99008 1.01200 0.95796 1.20446 0.91391 0.85178 0.96696 0.93536 1.42589 1.60742 1.12191 1.21058 1.19534 1.24329 0.94376 0.97542 0.90639 1.25392 1.01469 0.99726 1.00036 1.69798 1.40065 1.20599 1.31662 0.85352 0.77436 0.78263 0.79534 1.20460 1.23002 1.20938 1.21617 0.97320 0.98997 0.93745 0.89683 1.21605 0.95282 1.01204 1.00915 1.21437 0.82768 1.00134 0.95490 1.21026 1.00211 0.93956 0.98388 0.92970 0.91145 0.92539 0.91082 0.90194 0.84326 0.84379 0.86091 0.85572 0.86471 0.87319 0.93025 0.91286 0.90437 0.79379 0.94427 0.91926 0.92149 0.94227 0.93505 0.90371 0.85751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.89 71.98 0.71 -1.02 16 2 C -0.08 -1.25 6.06 29.85 0.18 -1.07 16 3 C -0.09 -1.82 5.13 -19.87 -0.10 -1.92 16 4 C -0.13 -2.48 9.70 22.27 0.22 -2.27 16 5 C -0.12 -2.57 10.05 22.27 0.22 -2.35 16 6 C -0.13 -3.09 9.70 22.27 0.22 -2.87 16 7 C -0.07 -1.76 4.37 -19.86 -0.09 -1.85 16 8 C -0.10 -2.12 4.18 29.10 0.12 -2.00 16 9 C 0.51 15.64 7.69 87.66 0.67 16.32 16 10 O -0.58 -22.09 15.45 -3.03 -0.05 -22.13 16 11 N -0.60 -18.63 2.98 -819.67 -2.44 -21.07 16 12 C 0.12 3.41 6.06 86.22 0.52 3.93 16 13 C -0.14 -4.22 5.76 30.53 0.18 -4.05 16 14 C 0.17 6.11 2.53 45.01 0.11 6.23 16 15 H 0.05 1.70 8.08 -2.39 -0.02 1.68 16 16 N -0.72 -33.21 3.64 -322.84 -1.18 -34.39 16 17 C -0.23 -11.64 9.93 84.03 0.83 -10.81 16 18 H 0.08 3.73 7.83 -2.91 -0.02 3.71 16 19 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 20 N -0.97 -57.62 13.06 21.65 0.28 -57.34 16 21 Si 0.96 44.87 29.55 68.60 2.03 46.89 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 23 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 24 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 25 C -0.10 -3.08 2.67 -10.70 -0.03 -3.11 16 26 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 27 C -0.13 -4.23 9.06 71.98 0.65 -3.58 16 28 C 0.12 4.28 5.43 86.38 0.47 4.75 16 29 C -0.12 -2.66 9.36 22.27 0.21 -2.45 16 30 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.07 1.06 8.09 -2.39 -0.02 1.04 16 34 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 35 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 37 H 0.12 2.67 8.06 -2.91 -0.02 2.65 16 38 H 0.13 2.12 7.62 -2.39 -0.02 2.10 16 39 H 0.12 2.23 7.90 -2.39 -0.02 2.21 16 40 H 0.11 2.29 5.93 -2.39 -0.01 2.27 16 41 H 0.05 1.87 7.74 -2.39 -0.02 1.85 16 42 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 43 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.37 18.87 5.92 -92.71 -0.55 18.32 16 45 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 46 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.04 1.51 7.53 -2.39 -0.02 1.50 16 49 H 0.05 1.86 6.64 -2.39 -0.02 1.84 16 50 H 0.08 2.75 7.00 -2.39 -0.02 2.73 16 51 H 0.12 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -66.85 403.12 4.57 -62.29 By element: Atomic # 1 Polarization: 37.13 SS G_CDS: 0.35 Total: 37.48 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 5.57 Total: -11.73 kcal Atomic # 7 Polarization: -109.47 SS G_CDS: -3.33 Total: -112.80 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.05 Total: -22.13 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -66.85 4.57 -62.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036082266.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.131 kcal (2) G-P(sol) polarization free energy of solvation -66.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds